prot_Ecto-sp9_F_contig92.17378.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig92.17378.1
Unique Nameprot_Ecto-sp9_F_contig92.17378.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length223
Homology
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BLAST of mRNA_Ecto-sp9_F_contig92.17378.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L705_9PHAE)

HSP 1 Score: 329 bits (844), Expect = 6.270e-108
Identity = 198/223 (88.79%), Postives = 203/223 (91.03%), Query Frame = 0 
Query:    1 MAAARGGGSANGEPSSNAVRAADGEVSASASRGVVAGADESWVREAPAAGERNAHGQGASGSVVPPRVGGEEEMAXXXXXXXXXXXXXXXXXXXXXXXXX-GGIISRVKGMQDRAGRTQAKLHAYNAALLKVKSLHAWSDPGRTKVWAAAISLLAAVLAIVPARYTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRHDSRWMD 222
            MAAARGGGSA GEPSS AVRAADGEVSASASRG VAGADESWVREAPAAGE NAHGQGASGSVV PR  GE EM+          XXXXXXXXXXXXXXX GGIISRVKGMQDRAGRTQAKLHAYNA LL+VKSLHAWSDPGRTKVWAAA+SLLAAVLAIVPARYTFAALVLFLFTEP+RP+TKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRHDSRWMD
Sbjct:  314 MAAARGGGSAEGEPSSVAVRAADGEVSASASRGGVAGADESWVREAPAAGETNAHGQGASGSVVTPRAWGEAEMSRAGKSSGGPAXXXXXXXXXXXXXXXXGGIISRVKGMQDRAGRTQAKLHAYNAVLLRVKSLHAWSDPGRTKVWAAAVSLLAAVLAIVPARYTFAALVLFLFTEPIRPETKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRHDSRWMD 536
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BLAST of mRNA_Ecto-sp9_F_contig92.17378.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ6_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 2.110e-70
Identity = 109/113 (96.46%), Postives = 112/113 (99.12%), Query Frame = 0 
Query:  110 MQDRAGRTQAKLHAYNAALLKVKSLHAWSDPGRTKVWAAAISLLAAVLAIVPARYTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRHDSRWMD 222
            MQDRAGRTQAKLHAYNA LL+VKSLHAWSDPGRTKVWAAA+SLLAA+LAIVPARYTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRHDSRWMD
Sbjct:    1 MQDRAGRTQAKLHAYNAVLLRVKSLHAWSDPGRTKVWAAAVSLLAALLAIVPARYTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRHDSRWMD 113
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BLAST of mRNA_Ecto-sp9_F_contig92.17378.1 vs.
Match: PRT_C (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ6_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.010e-30
Identity = 58/97 (59.79%), Postives = 74/97 (76.29%), Query Frame = 0 
Query:  118 QAKLHAYNAALLKVKSLHAWSDPGRTKVWAAAISLLAAVLAIVPARYTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYS 214
            QAKLHAYN ALLK++SL AW+DP RTKV+   +   A +LA +P RYT+A  V+FLFT+P+R   K + ELLL+DFW GLPV+S  HTN+ MAAIY+
Sbjct:    2 QAKLHAYNVALLKLRSLVAWTDPTRTKVFVLFLLFAALLLATIPLRYTWAGAVVFLFTKPLRSMKKTVPELLLDDFWRGLPVDSALHTNLDMAAIYT 98
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BLAST of mRNA_Ecto-sp9_F_contig92.17378.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ4_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 1.490e-29
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 
Query:  167 AALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRHDSRWMD 222
            AALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRHDSRWMD
Sbjct:  103 AALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRHDSRWMD 158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig92.17378.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized6.270e-10888.79protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.110e-7096.46protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
PRT_C2.010e-3059.79domain-containing protein n=1 Tax=Tribonema minus ... [more]
Uncharacterized1.490e-29100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 145..174
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 175..222
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..144
NoneNo IPR availableTMHMMTMhelixcoord: 152..174

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig92contigEcto-sp9_F_contig92:57290..59519 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig92.17378.1mRNA_Ecto-sp9_F_contig92.17378.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig92 55993..59684 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig92.17378.1 ID=prot_Ecto-sp9_F_contig92.17378.1|Name=mRNA_Ecto-sp9_F_contig92.17378.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=223bp
MAAARGGGSANGEPSSNAVRAADGEVSASASRGVVAGADESWVREAPAAG
ERNAHGQGASGSVVPPRVGGEEEMAVSGKSSGGPTAAASQRLQQQQQQQE
GGIISRVKGMQDRAGRTQAKLHAYNAALLKVKSLHAWSDPGRTKVWAAAI
SLLAAVLAIVPARYTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVE
SGTHTNVRMAAIYSRHDSRWMD*
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