mRNA_Ecto-sp9_F_contig9080.17267.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9080.17267.1
Unique NamemRNA_Ecto-sp9_F_contig9080.17267.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9080.17267.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC1_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 4.520e-38
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:   52 DKGAVTDDNGNEHKVDVDGPLFQDRLVEESGILGGQEIYLEDGRVPRPRELEITVLAYAPHFLGLAAAAAAERLKA 279
            DKGAVTDDNG+ HKVDVDGPLFQDRLVEESGILGGQEIYLEDGRVPRPRELEITVLAYAPHFLGLAAAAAAERLKA
Sbjct:  244 DKGAVTDDNGDGHKVDVDGPLFQDRLVEESGILGGQEIYLEDGRVPRPRELEITVLAYAPHFLGLAAAAAAERLKA 319
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BLAST of mRNA_Ecto-sp9_F_contig9080.17267.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase 64E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX8_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 6.250e-38
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:   55 KGAVTDDNGNEHKVDVDGPLFQDRLVEESGILGGQEIYLEDGRVPRPRELEITVLAYAPHFLGLAAAAAAERLKA 279
            KGA TDDNGN+HKVDVDGPLFQDRLVEESGILGGQEIYLEDGRVPRPRELEITVLAYAPHFLGLAAAAAAERLKA
Sbjct: 1511 KGAATDDNGNKHKVDVDGPLFQDRLVEESGILGGQEIYLEDGRVPRPRELEITVLAYAPHFLGLAAAAAAERLKA 1585
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9080.17267.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.520e-3897.37protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Ubiquitin6.250e-3897.33carboxyl-terminal hydrolase 64E n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9080contigEcto-sp9_F_contig9080:2063..2541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.2
Seed ortholog evalue1.5e-32
Seed eggNOG ortholog2880.D7FSX8
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGsCOG5077@1,KOG4598@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size280
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930976.197747-CDS-Ecto-sp9_F_contig9080:2062..22391622930976.197747-CDS-Ecto-sp9_F_contig9080:2062..2239Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9080 2063..2239 +
1692278976.0018356-CDS-Ecto-sp9_F_contig9080:2062..22391692278976.0018356-CDS-Ecto-sp9_F_contig9080:2062..2239Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9080 2063..2239 +
1622930976.2182374-CDS-Ecto-sp9_F_contig9080:2439..25411622930976.2182374-CDS-Ecto-sp9_F_contig9080:2439..2541Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9080 2440..2541 +
1692278976.0128117-CDS-Ecto-sp9_F_contig9080:2439..25411692278976.0128117-CDS-Ecto-sp9_F_contig9080:2439..2541Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9080 2440..2541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9080.17267.1prot_Ecto-sp9_F_contig9080.17267.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9080 2063..2541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9080.17267.1

>prot_Ecto-sp9_F_contig9080.17267.1 ID=prot_Ecto-sp9_F_contig9080.17267.1|Name=mRNA_Ecto-sp9_F_contig9080.17267.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=93bp
EDNQNNTNTAAGAAAAADKGAVTDDNGNEHKVDVDGPLFQDRLVEESGIL
GGQEIYLEDGRVPRPRELEITVLAYAPHFLGLAAAAAAERLKA
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mRNA from alignment at Ecto-sp9_F_contig9080:2063..2541+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9080.17267.1 ID=mRNA_Ecto-sp9_F_contig9080.17267.1|Name=mRNA_Ecto-sp9_F_contig9080.17267.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=479bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9080:2063..2541+ (Ectocarpus species9 EcSCA_722f female)
GAGGACAATCAAAACAACACCAACACCGCTGCTGGTGCTGCTGCGGCGGC
GGACAAAGGCGCGGTCACGGACGACAATGGCAATGAACACAAAGTCGATG
TCGATGGACCCCTGTTCCAGGACCGGCTGGTGGAAGAGTCGGGCATCTTG
GGAGGCCAAGAGATATACCTAGAAGATGTAAGACATCCTTCTTCCTCTTC
CTACACGAAAAAAACAGATGCACATGTGTGCGCGTGTCGCGTGTCTTTTG
TATTGATTTTGACTGTGTTTTTCTCTTGTTGATTTTGATTCTGTTGTTTT
CTGGGAGGACATGTATGTATGTTCTTCTCTATCCCTTGTTTTACCCCTCT
TTTTTCTTTCTTTCTTTGGTGATTCAGGGTCGCGTGCCGAGACCCCGAGA
GCTGGAGATCACGGTCCTCGCCTACGCACCGCACTTCCTCGGGCTCGCCG
CCGCCGCCGCCGCGGAAAGGCTCAAGGCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9080:2063..2541+

>mRNA_Ecto-sp9_F_contig9080.17267.1 ID=mRNA_Ecto-sp9_F_contig9080.17267.1|Name=mRNA_Ecto-sp9_F_contig9080.17267.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9080:2063..2541+ (Ectocarpus species9 EcSCA_722f female)
GAGGACAATCAAAACAACACCAACACCGCTGCTGGTGCTGCTGCGGCGGC
GGACAAAGGCGCGGTCACGGACGACAATGGCAATGAACACAAAGTCGATG
TCGATGGACCCCTGTTCCAGGACCGGCTGGTGGAAGAGTCGGGCATCTTG
GGAGGCCAAGAGATATACCTAGAAGATGAGGACAATCAAAACAACACCAA
CACCGCTGCTGGTGCTGCTGCGGCGGCGGACAAAGGCGCGGTCACGGACG
ACAATGGCAATGAACACAAAGTCGATGTCGATGGACCCCTGTTCCAGGAC
CGGCTGGTGGAAGAGTCGGGCATCTTGGGAGGCCAAGAGATATACCTAGA
AGATGGTCGCGTGCCGAGACCCCGAGAGCTGGAGATCACGGTCCTCGCCT
ACGCACCGCACTTCCTCGGGCTCGCCGCCGCCGCCGCCGCGGAAAGGCTC
AAGGCGGGTCGCGTGCCGAGACCCCGAGAGCTGGAGATCACGGTCCTCGC
CTACGCACCGCACTTCCTCGGGCTCGCCGCCGCCGCCGCCGCGGAAAGGC
TCAAGGCG
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