mRNA_Ecto-sp9_F_contig9078.17264.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9078.17264.1
Unique NamemRNA_Ecto-sp9_F_contig9078.17264.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9078.17264.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9078contigEcto-sp9_F_contig9078:3871..4696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_004160.1
Exons2
Model size159
Cds size129
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9078.17264.1prot_Ecto-sp9_F_contig9078.17264.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9078 3901..4696 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930975.8435402-UTR-Ecto-sp9_F_contig9078:3870..39001622930975.8435402-UTR-Ecto-sp9_F_contig9078:3870..3900Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9078 3871..3900 +
1692278975.8130372-UTR-Ecto-sp9_F_contig9078:3870..39001692278975.8130372-UTR-Ecto-sp9_F_contig9078:3870..3900Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9078 3871..3900 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930975.8618526-CDS-Ecto-sp9_F_contig9078:3900..39921622930975.8618526-CDS-Ecto-sp9_F_contig9078:3900..3992Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9078 3901..3992 +
1692278975.8249586-CDS-Ecto-sp9_F_contig9078:3900..39921692278975.8249586-CDS-Ecto-sp9_F_contig9078:3900..3992Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9078 3901..3992 +
1622930975.8799324-CDS-Ecto-sp9_F_contig9078:4659..46961622930975.8799324-CDS-Ecto-sp9_F_contig9078:4659..4696Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9078 4660..4696 +
1692278975.8333633-CDS-Ecto-sp9_F_contig9078:4659..46961692278975.8333633-CDS-Ecto-sp9_F_contig9078:4659..4696Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9078 4660..4696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9078.17264.1

>prot_Ecto-sp9_F_contig9078.17264.1 ID=prot_Ecto-sp9_F_contig9078.17264.1|Name=mRNA_Ecto-sp9_F_contig9078.17264.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=43bp
MTKGGRPLAQDTLGLARRPRVSWTSRRLGAGLYEIVQGPYCP*
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mRNA from alignment at Ecto-sp9_F_contig9078:3871..4696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9078.17264.1 ID=mRNA_Ecto-sp9_F_contig9078.17264.1|Name=mRNA_Ecto-sp9_F_contig9078.17264.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=826bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9078:3871..4696+ (Ectocarpus species9 EcSCA_722f female)
CAGGAGGCGCTGCGTCGAGATTGGGAGAGGATGACCAAGGGCGGGAGGCC
ATTAGCACAGGACACTTTGGGCTTAGCCCGGCGTCCACGAGTGTCATGGA
CGAGCCGGCGACTGGGAGCAGGGTAAGCTAGCAAGCGTATATAGACGGTT
CTCTGTTTTCTACCGGGCGGGCGAGTAGCTCAATCAAAGACACGATCTCC
CGTGTTGACCTGAGGTTCTAAGATATAGCACGGGAAGCGCGATGTAGCTT
CTCTGTAACCATGGTGAATCGATTTTATCCTCTTCCTTACGTGTAAGCAG
CCTCTCTCGTCACCGACGTACCCTAAAAAAAACATAATACAGTAGGTTGA
TAGCCCAACTCGAGAGTGATGGGCGGCCTGCGCGAGATGGCGGGGGGAGG
GCGGGCTTGGATGCAATTGGGGAGGATGGCAATGATGGCAATTACATTCC
TGCGCCGTCTTTGCTCACATCTTCCCTTGCTCGCCTGGATCTACTTCCAC
GTGTGACGTCGCATGCGTACGCTGTGTCACACAATTATAGTGTTTCTGGG
GTGCACGGGCTCGATACAATGTAGTCCGTGCGTACCGTTGAAAAGCTTTT
ACCCATGATGCCCCCGCCTCCTTCCTTACAGCGCGTTGCATTTGAACCCA
CTCGAAGACGCCAGACGGTTTGGCGCAACATGCAAATAGTGCTGTTGTCG
TTTCTCGTGTAGTCTCCCCCGTTTTAACTGATACTAATTGTTTTGGTGTA
TGTGATGTTCTTTGTCGAACTCTTCTTCGGGCTGTCCAGGCTGTACGAGA
TCGTGCAAGGACCGTATTGTCCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9078:3871..4696+

>mRNA_Ecto-sp9_F_contig9078.17264.1 ID=mRNA_Ecto-sp9_F_contig9078.17264.1|Name=mRNA_Ecto-sp9_F_contig9078.17264.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9078:3871..4696+ (Ectocarpus species9 EcSCA_722f female)
ATGACCAAGGGCGGGAGGCCATTAGCACAGGACACTTTGGGCTTAGCCCG
GCGTCCACGAGTGTCATGGACGAGCCGGCGACTGGGAGCAGGATGACCAA
GGGCGGGAGGCCATTAGCACAGGACACTTTGGGCTTAGCCCGGCGTCCAC
GAGTGTCATGGACGAGCCGGCGACTGGGAGCAGGGCTGTACGAGATCGTG
CAAGGACCGTATTGTCCGTGAGCTGTACGAGATCGTGCAAGGACCGTATT
GTCCGTGA
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