mRNA_Ecto-sp9_F_contig9072.17260.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9072.17260.1
Unique NamemRNA_Ecto-sp9_F_contig9072.17260.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9072.17260.1 vs.
Match: Rhodanese (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTI7_ECTSI)

HSP 1 Score: 259 bits (662), Expect = 3.160e-76
Identity = 136/140 (97.14%), Postives = 137/140 (97.86%), Query Frame = 1 
Query:    1 RRAGAAAEDADGGDAEGFVDPARGGRGVQALEGSLSRLKQYQNAVSASPSEVLAATPEDLSLKVEEGKDGRPVVLSMPYVRGKLEKGGVIQPGMVLVAIDGAPIAGGHFASVSDCRRSLDAVSYPCTLTFRDMPKYVWLS 420
            RRAGAAAEDADGGDAEGFVDPARGGRG QALEGSLSRLKQYQNAVSASPSEVLAATPEDLSLKVEEGKDGRPVVLSMPYVRGKLEKGGVIQPGMVLVAIDGAPIAGGHFASVSDCRRSLDAV+YPCTLTFRDMPK  WLS
Sbjct: 1377 RRAGAAAEDADGGDAEGFVDPARGGRGAQALEGSLSRLKQYQNAVSASPSEVLAATPEDLSLKVEEGKDGRPVVLSMPYVRGKLEKGGVIQPGMVLVAIDGAPIAGGHFASVSDCRRSLDAVAYPCTLTFRDMPK--WLS 1514
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9072.17260.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Rhodanese3.160e-7697.14domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9072contigEcto-sp9_F_contig9072:2044..3743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue5.9e-27
Seed eggNOG ortholog2880.D8LTI7
EggNOG OGs28JPJ@1,2QS2W@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_005770.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size647
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9072.17260.1prot_Ecto-sp9_F_contig9072.17260.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9072 2238..3048 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930975.0731568-UTR-Ecto-sp9_F_contig9072:2043..22371622930975.0731568-UTR-Ecto-sp9_F_contig9072:2043..2237Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9072 2044..2237 -
1692278975.4668245-UTR-Ecto-sp9_F_contig9072:2043..22371692278975.4668245-UTR-Ecto-sp9_F_contig9072:2043..2237Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9072 2044..2237 -
1622930975.172541-UTR-Ecto-sp9_F_contig9072:3048..31561622930975.172541-UTR-Ecto-sp9_F_contig9072:3048..3156Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9072 3049..3156 -
1692278975.5111134-UTR-Ecto-sp9_F_contig9072:3048..31561692278975.5111134-UTR-Ecto-sp9_F_contig9072:3048..3156Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9072 3049..3156 -
1622930975.19673-UTR-Ecto-sp9_F_contig9072:3623..37431622930975.19673-UTR-Ecto-sp9_F_contig9072:3623..3743Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9072 3624..3743 -
1692278975.5223973-UTR-Ecto-sp9_F_contig9072:3623..37431692278975.5223973-UTR-Ecto-sp9_F_contig9072:3623..3743Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9072 3624..3743 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930975.0945482-CDS-Ecto-sp9_F_contig9072:2237..24081622930975.0945482-CDS-Ecto-sp9_F_contig9072:2237..2408Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9072 2238..2408 -
1692278975.4784303-CDS-Ecto-sp9_F_contig9072:2237..24081692278975.4784303-CDS-Ecto-sp9_F_contig9072:2237..2408Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9072 2238..2408 -
1622930975.1520388-CDS-Ecto-sp9_F_contig9072:2994..30481622930975.1520388-CDS-Ecto-sp9_F_contig9072:2994..3048Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9072 2995..3048 -
1692278975.4885287-CDS-Ecto-sp9_F_contig9072:2994..30481692278975.4885287-CDS-Ecto-sp9_F_contig9072:2994..3048Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9072 2995..3048 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9072.17260.1

>prot_Ecto-sp9_F_contig9072.17260.1 ID=prot_Ecto-sp9_F_contig9072.17260.1|Name=mRNA_Ecto-sp9_F_contig9072.17260.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=75bp
MPYVRGKLEKGGVIQPGMVLVAIDGAPIAGGHFASVSDCRRSLDAVSYPC
TLTFRDMPKYVWLSRLLATRFPAA*
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mRNA from alignment at Ecto-sp9_F_contig9072:2044..3743-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9072.17260.1 ID=mRNA_Ecto-sp9_F_contig9072.17260.1|Name=mRNA_Ecto-sp9_F_contig9072.17260.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1700bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9072:2044..3743- (Ectocarpus species9 EcSCA_722f female)
CGCAGGGCAGGCGCGGCGGCGGAGGATGCTGACGGGGGTGACGCGGAGGG
CTTCGTGGACCCCGCGAGGGGGGGGCGGGGGGTGCAAGCGTTGGAGGGGT
CGCTCTCCAGGCTTAAGCAGGTGGGTTGTTGCTCGTTTCGCGTGCTCTCA
GGTTGTGGTGTTGTTATGTGCGTCTCAGGTGTTTTGGTTCCTTTTCTTGG
AGGCATTCGCAATTCTGCGATATGCTTGTTTGGTTGCTTTTTAGCAAAAG
GTGGAAATGCGTACGTGGTTTTAAGCAATGTCAACCCCAGCGCAATTACC
ATTCGTCCGATATGGTAGTTTTGAGTGCTTGATGTATTGGTGTAGTCTTG
ATATGACAGCATTTTGGAGTATTATGGATCCCACCGTACGCTCCTAGCGT
TTCAGGTTACCAGATAACATCTTAACATCATAAGCCGGATTGTGTTTCGA
GGAGGGGAAAACATCCAAGTTATGTACAGCAGTTCCAATGTTTTGTGTCG
CAAAGGAGAGGAATATTTTTCACGCACCCATCGTGCACGTGTGCGGTAAA
TGATTTTTCTCATTTTATTCTTGTTTTTCATTTTCAGTACCAGAACGCCG
TGTCGGCGTCACCCTCGGAAGTCCTAGCGGCAACGCCGGAGGACTTGTCG
CTCAAGGTGGAGGAAGGGAAGGACGGCAGGCCCGTCGTGTTGTCCATGCC
GTACGTGAGGGGGAAGCTGGAGAAGGGAGGCGTTATTCAGCCGGGGATGG
TGAGTCACGTTATGTGTGTACTTCTATTTGGTACCATAGGAAAGTGTCGT
TGTTCGCAGGAGTTTGAGTTTCGTTCGGCAACAGCAGTTGGTGTTGTGAG
GGGTCGCGTTCGCGCGATTGATAGGTTGATGAGGAAATAGAACAAGGATG
GAGGACGCAGACCCTATTCCCTAGCCCTAACCCAACTTCCCCGCTTGTAC
ATACGCTTTATCCAAAATGTTTGCATAATACGAAAAACCCTGCGAAGGCT
GCTGGTTGTAAGGGGTAGTCCCTGTGGCTTCTCACGTCTGTCACTGTTGC
GGACACTTTTTCTCTTCAGTTTGTAGGATGTGACTGCTGTTTCTCAGCAA
TGTGTACGCATTTTCGTGTTTGCGTTAATCAATCATCCTTAGGACACGAC
TACATGCAAGAAACGCGGTGAGATTCTTGCGTGTCGCGCGCATCAAAGGC
AGGCTACTGTTGCTTGGGACCCGGTTTAAGGTTTCGGTTTCATGCTCCCT
CATGTCCTTGATGATGCGACGAACGCCGCCAGTCACACTGACCCCTGCCC
TTTTTTTTTGTGTTGTTTTGTTGTAACGAAAAAAGGTTCTGGTTGCGATT
GACGGTGCCCCCATCGCGGGGGGGCACTTCGCTTCGGTGTCTGACTGCCG
CCGCAGCCTCGACGCGGTATCGTACCCCTGCACCCTCACCTTCCGAGACA
TGCCAAAGTACGTCTGGTTGTCCCGCCTACTTGCCACGAGATTCCCCGCA
GCGTGATGACTTGTGCGTAAGTCGCACTGCTCTAGCGGACTCCTAGCAGC
TTGGACAAGCAGCTATTTTCTGATGCGGTAGGGGAGGTGTACTGATGTAA
ACGCGTGCCGTTGTCTTTAGACCATTGGCCTCGCATCCCTACAATGCCGG
GACGGAGCGACATGCCGGGTTACCGCCGGCCTAGGCTACCTTTCACACGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9072:2044..3743-

>mRNA_Ecto-sp9_F_contig9072.17260.1 ID=mRNA_Ecto-sp9_F_contig9072.17260.1|Name=mRNA_Ecto-sp9_F_contig9072.17260.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9072:2044..3743- (Ectocarpus species9 EcSCA_722f female)
ATGCCGTACGTGAGGGGGAAGCTGGAGAAGGGAGGCGTTATTCAGCCGGG
GATGATGCCGTACGTGAGGGGGAAGCTGGAGAAGGGAGGCGTTATTCAGC
CGGGGATGGTTCTGGTTGCGATTGACGGTGCCCCCATCGCGGGGGGGCAC
TTCGCTTCGGTGTCTGACTGCCGCCGCAGCCTCGACGCGGTATCGTACCC
CTGCACCCTCACCTTCCGAGACATGCCAAAGTACGTCTGGTTGTCCCGCC
TACTTGCCACGAGATTCCCCGCAGCGTGAGTTCTGGTTGCGATTGACGGT
GCCCCCATCGCGGGGGGGCACTTCGCTTCGGTGTCTGACTGCCGCCGCAG
CCTCGACGCGGTATCGTACCCCTGCACCCTCACCTTCCGAGACATGCCAA
AGTACGTCTGGTTGTCCCGCCTACTTGCCACGAGATTCCCCGCAGCGTGA
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