mRNA_Ecto-sp9_F_contig9055.17246.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9055.17246.1
Unique NamemRNA_Ecto-sp9_F_contig9055.17246.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9055.17246.1 vs.
Match: Nfu_N (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0B8_9PHAE)

HSP 1 Score: 680 bits (1754), Expect = 6.010e-243
Identity = 387/417 (92.81%), Postives = 393/417 (94.24%), Query Frame = 1
Query:    1 MMQAHLVALAAMALPVGAFFVVSPPLATTTARGSAAAAWPMAPLTMRVSGIESTPNPSSFKFDLDQTLYGPGSRATATRGITYSRAVVQQQQAGVPEAILRLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAVEALGGAASSLDPLTLLMASGGEGGSAWKRSEMDGIAIRLQVSNGIPIQVEACPPGGSPLRRKLSPRFVEAMTEFVAGSGDEMAFFKGREWLPRGVRYPVEEGGDDEGGHGEEPAGA-SKKTAAESAEEALAAAVDEVELAYHESRLRGAVHAALILLQKNAEAAEASAAAXXXXXX-SGESTAEVRAATAVLQRSPAADKGEVVAAVDTLCVLAGDGSKDALDALVGFASSGEGPVPARRAAVAYIGGAGDAAGSAGLEAVSAVFRGDKNAGVRRTAGDAL 1245
            MMQAH+VALAAMALPVGAFFV+SP      ARGSAAAAWPMAP TMRVSGIESTPNPSSFKFDLDQTLYGPGS ATATRGITYSRAVVQQQQA VPEAILRLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAV+ALGGAASSLDPLTLLMASGGEGGSAWKRSEMDGIAIRLQVSNGIPIQVEACPPGG+PLRRKLS RFVEAMTEFVAGSGDEMAFFKGREWLPRGVRYP EEGGDDE GHGEE  GA SKKTAAE AEEALAAAVDEVELAYHESRLRGAVHAAL LLQKNAEAAEAS   XXXXXX SGESTAEVRAAT VLQRSPAADKGEVVAAVDTLC LAGDGSKDALDALVGFA+SGEGPVPARRAAVAYIGGAGDAAGSAGL+AVSAVFRGD NAGVRRTAGDAL
Sbjct:    1 MMQAHVVALAAMALPVGAFFVMSPXXXXXXARGSAAAAWPMAPPTMRVSGIESTPNPSSFKFDLDQTLYGPGSGATATRGITYSRAVVQQQQAEVPEAILRLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAVKALGGAASSLDPLTLLMASGGEGGSAWKRSEMDGIAIRLQVSNGIPIQVEACPPGGTPLRRKLSSRFVEAMTEFVAGSGDEMAFFKGREWLPRGVRYPAEEGGDDEDGHGEELTGATSKKTAAEFAEEALAAAVDEVELAYHESRLRGAVHAALNLLQKNAEAAEASXXXXXXXXXTSGESTAEVRAATTVLQRSPAADKGEVVAAVDTLCALAGDGSKDALDALVGFAASGEGPVPARRAAVAYIGGAGDAAGSAGLKAVSAVFRGDNNAGVRRTAGDAL 417          
BLAST of mRNA_Ecto-sp9_F_contig9055.17246.1 vs.
Match: Hypothetical (protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VDY6_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.240e-28
Identity = 131/411 (31.87%), Postives = 193/411 (46.96%), Query Frame = 1
Query:  142 VSGIESTPNPSSFKFDLDQTLYGPGSRATATRGITYSRAVVQQ--QQAGVPEAILRLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAVEALGGAASSLDPLTLLM------ASGGEGGSAWKRSEMDG-IAIRLQVSNGIPIQVEACPPGGSPLRRKLSPRFVEAMTEFV----------AGSGDEMAFFKGREWLPRGVRYPVEEGGDDEGGHGEEPAGASKKTAAESAEEALAAAV------DEVELAYHESRLRGAVHAA--------LILLQKNAEAAEASAAAXXXXXXSGESTAEVRAATAVLQRSPAADKGEVVAAVDTLCVLAGDGSKDALDALVGFASSGEGPVPARRAAVAYIGGAGDAA--------GSAGLE--AVSAVFRGDKNAGVRRTAGDAL 1245
            +SGIESTPNPSSF   +     G    A + RG T++     +      +PE I  +L++ GV SV+A+A  L +NKK SAKW+ ++P    AL G  +  +   +L+       S    GS    S   G + +R+Q SN IPIQVE     G+  RRKLSP+F E+M   +          + + +++ FF GR+W+ RG+RY + E  DD+G    + A A+  +     +E L          DE++ AY   RL G V  +          L  +N E              +     +V     +L           + AVD  C LA  G + AL  L  F SS +G +PARR A+A++GG GD           S+ L   A+ +  + +K+  +RRTAGDAL
Sbjct:   65 ISGIESTPNPSSFLIRVAAPPTGLEDLAGSLRGKTFASGSFTRVSDHDRLPE-IASILDVDGVVSVFAMATALTINKKASAKWEVVLPLVTTALIGNDNDQNDQDILLQGLLALTSAANAGSPQSASASAGQVRMRMQFSNKIPIQVEGTGYLGTVQRRKLSPKFQESMESMMQMQEGDSNSNSATSNKLDFFGGRKWVDRGIRY-LPESHDDDGDGSRDSASATASSITPEEQELLELEAVLQTESDEIDAAYSTRRLAGIVANSNDGSPLTLTPLEDRNPE-----------NPSNNXXXVDVEHQNQILILD--------LEAVDRSCDLAEKGDEQALQVLATFVSSRQGSLPARRNALAFLGGTGDIGLTTEHMNVNSSDLVFMAIVSALQHEKSPIMRRTAGDAL 454          
BLAST of mRNA_Ecto-sp9_F_contig9055.17246.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H0H6_9EUKA)

HSP 1 Score: 118 bits (296), Expect = 1.000e-26
Identity = 76/198 (38.38%), Postives = 113/198 (57.07%), Query Frame = 1
Query:  118 PMAPLTMRVSGIESTPNPSSFKFDLDQTL--YGPGSRATATRGITYSRAVVQQQQAGVPEAILRLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAVEALGGAASSLDPLTLLMASGGEGGSAWKRSEMDG-IAIRLQVSNGIPIQVEA-CPPGGSPLRRKLSPRFVEAMTEFVAGSGDEMAFFKGREWLPRGVRY 699
            P+  +  +V+ +ESTP+P +FK  LD+ L       +    RG T+ R          PEA+  +LE+ GV+SV    DW+ + K+  A W  ++   + ++GGA+ +L       A   E  S  K   ++G I +RLQVSNGIPIQVEA C   G+  R KLS RF EA+ +F+   G+E +FF+GR+WL +G+RY
Sbjct:   43 PLPAIFAKVTLVESTPSPDAFKLSLDEVLPVRSEEEKEERKRGKTF-RGSQAFDLLVAPEAVKGVLELDGVESVLVSTDWITVTKRAKASWGDLLEKVITSIGGASPTLVLPDAPRAGNKE--SEGKEGGLEGGIKMRLQVSNGIPIQVEATCISDGTSKRYKLSGRFEEAIADFLKIPGNEQSFFQGRKWLNKGIRY 237          
BLAST of mRNA_Ecto-sp9_F_contig9055.17246.1 vs.
Match: Hypothetical (protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YPQ0_9EUKA)

HSP 1 Score: 114 bits (284), Expect = 1.980e-24
Identity = 110/329 (33.43%), Postives = 149/329 (45.29%), Query Frame = 1
Query:  286 PEAILRLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAVEALGGAASSLD-PLTLLMASGGEGGSAWKR-SEMDGIAIRLQVSNGIPIQVEACPPGGSPLRRKLSPRFVEAMTEFVAGSGDEMAFFKGREWLPRGVRYPVEEGGDDEGGHGEEPAGASKKTAAESAEEALAAAVDEVELAYHESRLRGAVHAALILLQKNAEAAEASAAAXXXXXXSGESTAEVRAATAVLQR--SPAADKGEVVAAVDTLCVLAGDGSKDALDALVGFASSGEGPVPARRAAVAYIGGAGDAAGSAGL-----EAVSAVFRGDKNAGVRRTAGDAL 1245
            P A+  LL+I GV SVY L  W+ + K+  A W  ++   ++ALGGA+ SL  P  LL+             S+M+GI +RLQVSNGIPIQ+EA    G   RRKLS RF E+++ F++  G++ AFF GR+WL +G+RY          GH              S  EAL    DE+E  Y   RL+             AE AE +           +  A V     V Q+   P A K                    A++ALV F   G G +  RR AVA +G  G+            + +S  F  +    +RRTAGDAL
Sbjct:    8 PAAVQALLDIPGVASVYVLPTWVTVTKEKKAAWGEMLMPCIDALGGASPSLSLPTNLLLTEXXXXXXXXXXXSDMEGIQMRLQVSNGIPIQIEAKAMDGMSERRKLSGRFEESISTFLSIPGNDQAFFDGRKWLNKGLRY----------GH-------------VSLSEALDTLADEIETMYPPQRLKALA----------AEEAEYTLVDLQALLNDLDDLASVDTVAEVAQKHEDPMAQKA-------------------AVNALVRFVQRGTGSMATRRHAVASLGIMGEXXXXXXXXXXXXDCLSLCFENEPAPFLRRTAGDAL 284          
BLAST of mRNA_Ecto-sp9_F_contig9055.17246.1 vs.
Match: Hypothetical (protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XB48_9EUKA)

HSP 1 Score: 93.6 bits (231), Expect = 1.190e-17
Identity = 95/265 (35.85%), Postives = 122/265 (46.04%), Query Frame = 1
Query:  481 SAWKRSEMDGIAIRLQVSNGIPIQVEACPPGGSPLRRKLSPRFVEAMTEFVAGSGDEMAFFKGREWLPRGVRYPVEEGGDDEGGHGEEPAGASKKTAAESAEEALAAAVDEVELAYHESRLRGAVHAALILLQKNAEAAEASAAAXXXXXXSGESTAEVRAATAVLQRSPAADKGEVVAAVDTLCVLAG-----DGSKDALDALVGFASSGEGPVPARRAAVAYIGGAGDAAGSAGL-----EAVSAVFRGDKNAGVRRTAGDAL 1245
            S+   SEM GI +RLQVSNGIPIQ+EA    G+  RRKLS RF E++  F++  G++  FF GR+WL +G+RY          GH              S  EAL    DE+E  Y   RL             NA A+E S                   A A LQ  P       +A+VDT+  +A         K A+DALV F   G G +  RR AVA +G  GDA    G+     + +S  F  +    +RRTAGDAL
Sbjct:    4 SSSSSSEMQGIQMRLQVSNGIPIQIEAKSTDGTSDRRKLSGRFEESIMAFLSTPGNDQLFFDGRKWLNKGLRY----------GHA-------------SLSEALDTLADEIETMYPPERL-------------NALASEDS-----------------NQALADLQ--PLLKDLHDLASVDTVAEIAQKHEDPSARKAAIDALVRFVQRGSGNMATRRHAVASLGIMGDAIEELGVAGAVVDCLSFCFENEPAPFLRRTAGDAL 213          
BLAST of mRNA_Ecto-sp9_F_contig9055.17246.1 vs.
Match: HEAT (repeat-containing protein n=1 Tax=Marininema halotolerans TaxID=1155944 RepID=A0A1I6NZW2_9BACL)

HSP 1 Score: 78.2 bits (191), Expect = 3.710e-12
Identity = 59/188 (31.38%), Postives = 94/188 (50.00%), Query Frame = 1
Query:  136 MRVSGIESTPNPSSFKFDLDQTLYGPGSRATATRGITYSRAVVQQQQAGVPEAILRLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAVEALGGAASSLDPLTLLMASGGEGGSAWKRSEMDGIAIRLQVSNGIPIQVEACPPGGSPLRRKLSPRFVEAMTEFVAGSGDEMAFFKGREWLPRGVRY 699
            M++  IE TP+P S K +LDQ +         ++G TY+  V + + A  PE +  +L IQGV S++ +AD+L +++ P  +W  I+P   E  G  +S+         S  EG S+        + + LQ   G+PIQ++     G   R  L  RF +A+ E  + S + +     R+W  RGVRY
Sbjct:    1 MQIKSIEPTPSPHSMKVNLDQKV---------SKGATYT--VDRSEDA--PEYVKHILAIQGVKSIFHVADFLAIDRDPKVEWQQILPQVREIFGEKSSAK--------SSEEGTSSSTEEAFGEVKVFLQTFRGLPIQLKLVS-FGEEKRYSLPERFAKAVMEAQSASANMVME---RKWEERGVRY 163          
BLAST of mRNA_Ecto-sp9_F_contig9055.17246.1 vs.
Match: conserved (virulence factor C family protein n=1 Tax=Brevibacillus massiliensis TaxID=1118054 RepID=UPI00030A3AF3)

HSP 1 Score: 77.0 bits (188), Expect = 8.780e-12
Identity = 60/189 (31.75%), Postives = 95/189 (50.26%), Query Frame = 1
Query:  136 MRVSGIESTPNPSSFKFDLDQTLYGPGSRATATRGITYSRAVVQQQQAGVPEAILRLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAVEALG-GAASSLDPLTLLMASGGEGGSAWKRSEMDGIAIRLQVSNGIPIQVEACPPGGSPLRRKLSPRFVEAMTEFVAGSGDEMAFFKGREWLPRGVRY 699
            M++  IE TP+P+S K +LD+ L  PG + T T          Q+ +   PE I +LLEI+GV S++ +AD++ L ++ +A W AI+  A E LG G A S+  +             W+      + + +Q+   IP+QV+    G   +R  L  RF +A     A S +       R+W+ +GVRY
Sbjct:    1 MKIVSIEPTPSPNSMKLNLDEKL-PPGVKMTYT----------QENRERAPEQIKKLLEIEGVKSIFHVADFIALERRANADWKAILAQAGEVLGEGTAQSVQAVAQNSQD-----DQWQE-----VNVFVQMFRHIPMQVKVTA-GLEQMRVGLPERFTQAAMRAGAASAN---LVMERKWVEQGVRY 164          
BLAST of mRNA_Ecto-sp9_F_contig9055.17246.1 vs.
Match: PBS (lyase n=1 Tax=Marinithermofilum abyssi TaxID=1571185 RepID=A0A8J2VE20_9BACL)

HSP 1 Score: 76.6 bits (187), Expect = 1.170e-11
Identity = 59/188 (31.38%), Postives = 87/188 (46.28%), Query Frame = 1
Query:  136 MRVSGIESTPNPSSFKFDLDQTLYGPGSRATATRGITYSRAVVQQQQAGVPEAILRLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAVEALGGAASSLDPLTLLMASGGEGGSAWKRSEMDGIAIRLQVSNGIPIQVEACPPGGSPLRRKLSPRFVEAMTEFVAGSGDEMAFFKGREWLPRGVRY 699
            M++  IE TP+P+S K  +D+T         A++G TY+R    + Q   P  I RLL IQGV SV+ +AD+L + + P   W  I+    E  G    S D          E  S   +     + + LQ   G+PIQ++    G    R  L  RF EA+ +    S + +     R+W  RG+RY
Sbjct:    1 MKILSIEPTPSPNSMKVTVDET---------ASKGRTYTR----ENQEEAPGIIRRLLSIQGVKSVFRVADFLAVERNPRVDWQPILAQVREVFGEETPSADQ---------EKSSPETKEAFGEVKVFLQTFRGLPIQIKLVV-GDEEKRIALPDRFAEAVMKAQTASPNMVME---RKWEDRGLRY 162          
BLAST of mRNA_Ecto-sp9_F_contig9055.17246.1 vs.
Match: virulence (factor n=1 Tax=Brevibacillus marinus TaxID=2496837 RepID=UPI000F84BC4D)

HSP 1 Score: 76.6 bits (187), Expect = 1.220e-11
Identity = 59/188 (31.38%), Postives = 89/188 (47.34%), Query Frame = 1
Query:  136 MRVSGIESTPNPSSFKFDLDQTLYGPGSRATATRGITYSRAVVQQQQAGVPEAILRLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAVEALGGAASSLDPLTLLMASGGEGGSAWKRSEMDGIAIRLQVSNGIPIQVEACPPGGSPLRRKLSPRFVEAMTEFVAGSGDEMAFFKGREWLPRGVRY 699
            MR+  IE TP+P+S K +LD+ L          +G TY+RA     Q   P  I ++L I GV SVY  AD+L + + P+A W  I+    EA G A ++  P         E   AW+      + + +Q+   IP+Q++     G   R  L  RF  A+ +  A S   +     R+W+ +G RY
Sbjct:    1 MRILSIEPTPSPNSMKVNLDERL------PAGQKGTTYTRA----NQHTAPAPIAQILAIDGVKSVYRAADFLAVERIPTADWPTILSQVREAFGEAGAAPAPSGQTPEQAAE--DAWRE-----VTVLIQMFRNIPMQIKLLA-DGEERRFGLPDRFKAAVMKAQAAS---VNLIVERQWVEQGTRY 167          
BLAST of mRNA_Ecto-sp9_F_contig9055.17246.1 vs.
Match: conserved (virulence factor C family protein n=1 Tax=Fictibacillus gelatini TaxID=225985 RepID=UPI0004139C08)

HSP 1 Score: 73.6 bits (179), Expect = 1.230e-10
Identity = 55/189 (29.10%), Postives = 92/189 (48.68%), Query Frame = 1
Query:  136 MRVSGIESTPNPSSFKFDLDQTLYGPGSRATATRGITYSRAVVQQQQAGVPEAILRLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAVEALGG-AASSLDPLTLLMASGGEGGSAWKRSEMDGIAIRLQVSNGIPIQVEACPPGGSPLRRKLSPRFVEAMTEFVAGSGDEMAFFKGREWLPRGVRY 699
            M++  IE TP+P+S K +LD+TL G       T    Y++  +    A  P+ I RL EI GV S+Y +AD++ L++ P A W+ ++    +  G  +A  ++  T             K+ E + I + +Q   G+P+Q++        +R  L  RF++A  E    S +       R+W  +GVRY
Sbjct:    1 MKIKSIEPTPSPNSMKINLDETLPG-------TERYNYTKETI----ADAPDYIKRLFEIDGVKSIYHVADFIALDRHPKADWEEVLAGVRKVFGETSAIKIEDET----------KQEKKEEYEEITVFIQKFRGLPMQIKLTTEQEE-VRVGLPERFMKAALEAQKASTN---LVMERKWEEQGVRY 164          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9055.17246.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Nfu_N6.010e-24392.81domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Hypothetical1.240e-2831.87protein n=2 Tax=Chaetoceros debilis TaxID=122233 R... [more]
Hypothetical1.000e-2638.38protein (Fragment) n=1 Tax=Amorphochlora amoebifor... [more]
Hypothetical1.980e-2433.43protein n=1 Tax=Lotharella globosa TaxID=91324 Rep... [more]
Hypothetical1.190e-1735.85protein n=1 Tax=Lotharella oceanica TaxID=641309 R... [more]
HEAT3.710e-1231.38repeat-containing protein n=1 Tax=Marininema halot... [more]
conserved8.780e-1231.75virulence factor C family protein n=1 Tax=Brevibac... [more]
PBS1.170e-1131.38lyase n=1 Tax=Marinithermofilum abyssi TaxID=15711... [more]
virulence1.220e-1131.38factor n=1 Tax=Brevibacillus marinus TaxID=2496837... [more]
conserved1.230e-1029.10virulence factor C family protein n=1 Tax=Fictibac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9055contigEcto-sp9_F_contig9055:3007..5398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score78.2
Seed ortholog evalue1e-11
Seed eggNOG ortholog1450694.BTS2_3969
Preferred nameypgR
EggNOG free text desc.COG0694 Thioredoxin-like proteins and domains
EggNOG OGs1TRJT@1239,1ZB7F@1386,4HBFD@91061,COG1413@1,COG1413@2
COG Functional cat.C
Best tax levelBacillus
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionScaffold protein Nfu/NifU, N-terminal
Ec32 orthologEc-16_003800.1
Exons3
Model size1245
Cds size1245
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9055.17246.1prot_Ecto-sp9_F_contig9055.17246.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9055 3007..5398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930972.828261-CDS-Ecto-sp9_F_contig9055:3006..33991622930972.828261-CDS-Ecto-sp9_F_contig9055:3006..3399Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9055 3007..3399 +
1692278974.4152756-CDS-Ecto-sp9_F_contig9055:3006..33991692278974.4152756-CDS-Ecto-sp9_F_contig9055:3006..3399Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9055 3007..3399 +
1622930972.843438-CDS-Ecto-sp9_F_contig9055:4120..42791622930972.843438-CDS-Ecto-sp9_F_contig9055:4120..4279Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9055 4121..4279 +
1692278974.4286087-CDS-Ecto-sp9_F_contig9055:4120..42791692278974.4286087-CDS-Ecto-sp9_F_contig9055:4120..4279Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9055 4121..4279 +
1622930972.8587432-CDS-Ecto-sp9_F_contig9055:4705..53981622930972.8587432-CDS-Ecto-sp9_F_contig9055:4705..5398Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9055 4706..5398 +
1692278974.437994-CDS-Ecto-sp9_F_contig9055:4705..53981692278974.437994-CDS-Ecto-sp9_F_contig9055:4705..5398Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9055 4706..5398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9055.17246.1

>prot_Ecto-sp9_F_contig9055.17246.1 ID=prot_Ecto-sp9_F_contig9055.17246.1|Name=mRNA_Ecto-sp9_F_contig9055.17246.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=415bp
MMQAHLVALAAMALPVGAFFVVSPPLATTTARGSAAAAWPMAPLTMRVSG
IESTPNPSSFKFDLDQTLYGPGSRATATRGITYSRAVVQQQQAGVPEAIL
RLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAVEALGGAASSLDPLT
LLMASGGEGGSAWKRSEMDGIAIRLQVSNGIPIQVEACPPGGSPLRRKLS
PRFVEAMTEFVAGSGDEMAFFKGREWLPRGVRYPVEEGGDDEGGHGEEPA
GASKKTAAESAEEALAAAVDEVELAYHESRLRGAVHAALILLQKNAEAAE
ASAAAPAAAEASGESTAEVRAATAVLQRSPAADKGEVVAAVDTLCVLAGD
GSKDALDALVGFASSGEGPVPARRAAVAYIGGAGDAAGSAGLEAVSAVFR
GDKNAGVRRTAGDAL
back to top

mRNA from alignment at Ecto-sp9_F_contig9055:3007..5398+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9055.17246.1 ID=mRNA_Ecto-sp9_F_contig9055.17246.1|Name=mRNA_Ecto-sp9_F_contig9055.17246.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2392bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9055:3007..5398+ (Ectocarpus species9 EcSCA_722f female)
ATGATGCAAGCTCATCTTGTTGCCCTGGCAGCGATGGCTCTACCCGTCGG GGCCTTCTTTGTCGTGTCGCCGCCGCTAGCAACAACGACCGCCAGAGGAT CAGCAGCAGCGGCGTGGCCCATGGCACCGCTAACGATGCGCGTCTCCGGC ATAGAGAGTACGCCAAACCCAAGCTCGTTCAAGTTTGACCTCGATCAGAC CCTCTACGGTCCCGGCTCGCGCGCCACGGCAACCAGAGGCATCACCTACT CTCGCGCGGTGGTGCAGCAGCAGCAAGCAGGGGTGCCCGAGGCTATCTTA AGACTGCTCGAGATCCAAGGCGTGGATTCCGTGTACGCCTTGGCGGACTG GCTGTGCCTCAACAAGAAGCCCTCCGCCAAGTGGGATGCGATTGTGAGTG TGTATGAAGGTGGAGAGCGCGAATGTGACAGTCCCGCGAACGAGCGAAAT TTTTTTGAACGTCAAGTTCTATGCTATGCGTACAACAGTATGCTATGAGT TCAATGACACCGGACCTGGCCTTTGTAAGGACTTGTTGTTCGACGAGGTG TCCTTCGAAGAACATGGAGATTGCTGCACGTGAAAAGTACATGCTGTCAT CATCTGATAGAAAAACCGCACACCGAATTCTGCAGATGGTGCACGGACAA ACTGACACGTGGGCACACGCGCATCCGGTCGCTTGCTGCTCTGTGTTACA TTTTTTTCCAGCCTAGATAAACTGCTGTTGGGTAGTGCTTATGTGGACAA CGGCAACCGCTGGCTGGGGGTGGAGCACCTAACATGGAGGCTGTGGCGTG TGCGCGTCGTGACCCAACACTTTGTCAGGCCATCATGTAGAGAGCACCTG GACGTGGCATTGCCTCTCTCCTCCCCCCCTCCCTCCCTCCCCCCCCCGCC GGAGCGCGAAATATAGTCACAGAGGCGATTGAGAAAAAGCAAGAATCAAC CAATACGTACCTAGGTATTGACTAGCGGTGATAATTGGTCGTGTACCAAG AGACGAGTTCTAGGACGCAATTTTTGGGTGTTGCATGTGATGTACGTGGT AGCGTGCACAATTTTACGCAATGACGAAAATGTGGCGACGGTGACAACGA CGACGTTTGGGCAGGTTCCCGCGGCGGTGGAGGCCTTGGGCGGGGCGGCC TCGTCCTTAGATCCTCTGACGCTACTCATGGCGTCCGGGGGGGAGGGCGG GTCGGCTTGGAAAAGGTCGGAGATGGACGGAATCGCCATTCGCCTGCAGG TGTCCAACGGCATCCCGATCCAGGTGCGGCGGCGGGTGAAAGTTGCAACG TTGCGGGACAACACTCGAAAAGACGACGTGGGTGTGCGCCCGTTCTTTTG GGCAGTGTCCGCGTTCGGGGGCCCCGTATGCATACTGCTTGTGACTTTCC TGCGTATATACCCCCAAAAATAATTTCATGCCAATTCGAATGGTTCCAGT ATTCATCGGTTTGTCGTGCTTTTCGCCTTCAACTAACCTCCCCTTGAAGG ACAACACAGATTTGCGGCGTGTGTTTGCGCCGTTCTTTTGGGCAGCGTCC GCGACAGAGTCCTGAGCCAATAAAGACCAATGGGCGCGTGTTCCCGCATC GCCTCTGCCTCTTGACGGTAGAGCGTTAAAAGTTAACCTTGCTCTGGTTC TATCTCTCCCCGACCATCGTATCTCGCTCTCTACAACCCCCCCCCGCAGG TGGAAGCCTGCCCCCCGGGCGGGAGCCCCCTCCGCCGCAAGCTGTCACCC CGCTTCGTTGAAGCCATGACGGAGTTCGTCGCCGGCTCCGGCGACGAGAT GGCCTTCTTCAAGGGCCGCGAGTGGCTGCCCCGCGGTGTCCGGTATCCCG TGGAAGAGGGAGGGGATGATGAAGGCGGTCACGGCGAGGAGCCGGCCGGG GCGAGTAAGAAGACGGCCGCCGAGTCCGCCGAGGAAGCGCTTGCCGCGGC CGTCGACGAGGTCGAGCTGGCCTACCACGAGTCCAGGCTGCGCGGAGCGG TGCACGCGGCCCTGATCCTCCTGCAGAAGAACGCCGAGGCTGCTGAGGCT TCTGCTGCTGCCCCTGCTGCTGCTGAGGCTTCTGGCGAGAGCACCGCGGA GGTGAGGGCGGCGACCGCGGTGCTGCAGCGATCCCCGGCCGCCGACAAGG GCGAGGTTGTCGCGGCCGTCGACACCCTCTGTGTCCTGGCGGGGGACGGT TCCAAGGACGCCCTCGACGCGCTCGTCGGCTTCGCCTCATCCGGGGAAGG CCCGGTCCCCGCCCGACGCGCGGCGGTGGCGTACATTGGGGGCGCGGGGG ACGCCGCGGGATCTGCGGGCTTGGAGGCCGTTTCGGCGGTGTTTCGCGGG GACAAGAACGCCGGGGTTCGGCGCACCGCGGGGGACGCGCTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9055:3007..5398+

>mRNA_Ecto-sp9_F_contig9055.17246.1 ID=mRNA_Ecto-sp9_F_contig9055.17246.1|Name=mRNA_Ecto-sp9_F_contig9055.17246.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2490bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9055:3007..5398+ (Ectocarpus species9 EcSCA_722f female)
ATGATGCAAGCTCATCTTGTTGCCCTGGCAGCGATGGCTCTACCCGTCGG
GGCCTTCTTTGTCGTGTCGCCGCCGCTAGCAACAACGACCGCCAGAGGAT
CAGCAGCAGCGGCGTGGCCCATGGCACCGCTAACGATGCGCGTCTCCGGC
ATAGAGAGTACGCCAAACCCAAGCTCGTTCAAGTTTGACCTCGATCAGAC
CCTCTACGGTCCCGGCTCGCGCGCCACGGCAACCAGAGGCATCACCTACT
CTCGCGCGGTGGTGCAGCAGCAGCAAGCAGGGGTGCCCGAGGCTATCTTA
AGACTGCTCGAGATCCAAGGCGTGGATTCCGTGTACGCCTTGGCGGACTG
GCTGTGCCTCAACAAGAAGCCCTCCGCCAAGTGGGATGCGATTATGATGC
AAGCTCATCTTGTTGCCCTGGCAGCGATGGCTCTACCCGTCGGGGCCTTC
TTTGTCGTGTCGCCGCCGCTAGCAACAACGACCGCCAGAGGATCAGCAGC
AGCGGCGTGGCCCATGGCACCGCTAACGATGCGCGTCTCCGGCATAGAGA
GTACGCCAAACCCAAGCTCGTTCAAGTTTGACCTCGATCAGACCCTCTAC
GGTCCCGGCTCGCGCGCCACGGCAACCAGAGGCATCACCTACTCTCGCGC
GGTGGTGCAGCAGCAGCAAGCAGGGGTGCCCGAGGCTATCTTAAGACTGC
TCGAGATCCAAGGCGTGGATTCCGTGTACGCCTTGGCGGACTGGCTGTGC
CTCAACAAGAAGCCCTCCGCCAAGTGGGATGCGATTGTTCCCGCGGCGGT
GGAGGCCTTGGGCGGGGCGGCCTCGTCCTTAGATCCTCTGACGCTACTCA
TGGCGTCCGGGGGGGAGGGCGGGTCGGCTTGGAAAAGGTCGGAGATGGAC
GGAATCGCCATTCGCCTGCAGGTGTCCAACGGCATCCCGATCCAGGTTCC
CGCGGCGGTGGAGGCCTTGGGCGGGGCGGCCTCGTCCTTAGATCCTCTGA
CGCTACTCATGGCGTCCGGGGGGGAGGGCGGGTCGGCTTGGAAAAGGTCG
GAGATGGACGGAATCGCCATTCGCCTGCAGGTGTCCAACGGCATCCCGAT
CCAGGTGGAAGCCTGCCCCCCGGGCGGGAGCCCCCTCCGCCGCAAGCTGT
CACCCCGCTTCGTTGAAGCCATGACGGAGTTCGTCGCCGGCTCCGGCGAC
GAGATGGCCTTCTTCAAGGGCCGCGAGTGGCTGCCCCGCGGTGTCCGGTA
TCCCGTGGAAGAGGGAGGGGATGATGAAGGCGGTCACGGCGAGGAGCCGG
CCGGGGCGAGTAAGAAGACGGCCGCCGAGTCCGCCGAGGAAGCGCTTGCC
GCGGCCGTCGACGAGGTCGAGCTGGCCTACCACGAGTCCAGGCTGCGCGG
AGCGGTGCACGCGGCCCTGATCCTCCTGCAGAAGAACGCCGAGGCTGCTG
AGGCTTCTGCTGCTGCCCCTGCTGCTGCTGAGGCTTCTGGCGAGAGCACC
GCGGAGGTGAGGGCGGCGACCGCGGTGCTGCAGCGATCCCCGGCCGCCGA
CAAGGGCGAGGTTGTCGCGGCCGTCGACACCCTCTGTGTCCTGGCGGGGG
ACGGTTCCAAGGACGCCCTCGACGCGCTCGTCGGCTTCGCCTCATCCGGG
GAAGGCCCGGTCCCCGCCCGACGCGCGGCGGTGGCGTACATTGGGGGCGC
GGGGGACGCCGCGGGATCTGCGGGCTTGGAGGCCGTTTCGGCGGTGTTTC
GCGGGGACAAGAACGCCGGGGTTCGGCGCACCGCGGGGGACGCGCTGGTG
GAAGCCTGCCCCCCGGGCGGGAGCCCCCTCCGCCGCAAGCTGTCACCCCG
CTTCGTTGAAGCCATGACGGAGTTCGTCGCCGGCTCCGGCGACGAGATGG
CCTTCTTCAAGGGCCGCGAGTGGCTGCCCCGCGGTGTCCGGTATCCCGTG
GAAGAGGGAGGGGATGATGAAGGCGGTCACGGCGAGGAGCCGGCCGGGGC
GAGTAAGAAGACGGCCGCCGAGTCCGCCGAGGAAGCGCTTGCCGCGGCCG
TCGACGAGGTCGAGCTGGCCTACCACGAGTCCAGGCTGCGCGGAGCGGTG
CACGCGGCCCTGATCCTCCTGCAGAAGAACGCCGAGGCTGCTGAGGCTTC
TGCTGCTGCCCCTGCTGCTGCTGAGGCTTCTGGCGAGAGCACCGCGGAGG
TGAGGGCGGCGACCGCGGTGCTGCAGCGATCCCCGGCCGCCGACAAGGGC
GAGGTTGTCGCGGCCGTCGACACCCTCTGTGTCCTGGCGGGGGACGGTTC
CAAGGACGCCCTCGACGCGCTCGTCGGCTTCGCCTCATCCGGGGAAGGCC
CGGTCCCCGCCCGACGCGCGGCGGTGGCGTACATTGGGGGCGCGGGGGAC
GCCGCGGGATCTGCGGGCTTGGAGGCCGTTTCGGCGGTGTTTCGCGGGGA
CAAGAACGCCGGGGTTCGGCGCACCGCGGGGGACGCGCTG
back to top