mRNA_Ecto-sp9_F_contig9012.17208.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9012.17208.1
Unique NamemRNA_Ecto-sp9_F_contig9012.17208.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9012.17208.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9012contigEcto-sp9_F_contig9012:5017..5550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size534
Cds size534
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930966.566046-CDS-Ecto-sp9_F_contig9012:5016..55501622930966.566046-CDS-Ecto-sp9_F_contig9012:5016..5550Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9012 5017..5550 +
1692278971.5460894-CDS-Ecto-sp9_F_contig9012:5016..55501692278971.5460894-CDS-Ecto-sp9_F_contig9012:5016..5550Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9012 5017..5550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9012.17208.1prot_Ecto-sp9_F_contig9012.17208.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9012 5017..5550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9012.17208.1

>prot_Ecto-sp9_F_contig9012.17208.1 ID=prot_Ecto-sp9_F_contig9012.17208.1|Name=mRNA_Ecto-sp9_F_contig9012.17208.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=178bp
MPLLEDLVSSTSVGGALFGSSLRIMELFASLACHDHMRVHPDGRRTNKTQ
RRLLETPFIGRHGLSSTQYDFPVELYEKSELEGFGVGIDETLTVDATTDA
TPSLVGRYFACDFGPTCCRRSMKVSELDADAHTIGKSFAAKHVTKRCVGD
CKSVFYLNKRTHHEDLGEDGLTTHTFYP
back to top

mRNA from alignment at Ecto-sp9_F_contig9012:5017..5550+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9012.17208.1 ID=mRNA_Ecto-sp9_F_contig9012.17208.1|Name=mRNA_Ecto-sp9_F_contig9012.17208.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=534bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9012:5017..5550+ (Ectocarpus species9 EcSCA_722f female)
ATGCCTCTATTGGAGGACTTGGTTTCATCTACAAGTGTTGGTGGCGCACT
CTTCGGATCTTCCCTGCGGATCATGGAGCTCTTCGCTTCACTTGCCTGCC
ATGACCACATGCGGGTGCACCCGGATGGCCGTAGGACGAACAAGACCCAG
CGGCGCCTCCTCGAGACGCCCTTCATCGGTCGACACGGGTTGTCTTCAAC
GCAGTACGACTTCCCCGTTGAACTCTACGAGAAGAGCGAACTAGAAGGGT
TCGGCGTGGGGATAGATGAGACTTTAACTGTAGACGCTACTACAGACGCG
ACACCCTCGTTGGTAGGTAGGTACTTCGCCTGTGATTTCGGCCCTACCTG
CTGCCGGCGGTCAATGAAGGTTAGTGAACTTGACGCCGATGCCCACACGA
TAGGCAAGTCGTTCGCGGCGAAACACGTTACGAAGCGGTGTGTTGGAGAC
TGCAAGAGCGTTTTCTACCTCAACAAAAGGACGCACCACGAGGACCTCGG
AGAAGATGGTCTCACGACGCACACCTTCTACCCA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9012:5017..5550+

>mRNA_Ecto-sp9_F_contig9012.17208.1 ID=mRNA_Ecto-sp9_F_contig9012.17208.1|Name=mRNA_Ecto-sp9_F_contig9012.17208.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1068bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9012:5017..5550+ (Ectocarpus species9 EcSCA_722f female)
ATGCCTCTATTGGAGGACTTGGTTTCATCTACAAGTGTTGGTGGCGCACT
CTTCGGATCTTCCCTGCGGATCATGGAGCTCTTCGCTTCACTTGCCTGCC
ATGACCACATGCGGGTGCACCCGGATGGCCGTAGGACGAACAAGACCCAG
CGGCGCCTCCTCGAGACGCCCTTCATCGGTCGACACGGGTTGTCTTCAAC
GCAGTACGACTTCCCCGTTGAACTCTACGAGAAGAGCGAACTAGAAGGGT
TCGGCGTGGGGATAGATGAGACTTTAACTGTAGACGCTACTACAGACGCG
ACACCCTCGTTGGTAGGTAGGTACTTCGCCTGTGATTTCGGCCCTACCTG
CTGCCGGCGGTCAATGAAGGTTAGTGAACTTGACGCCGATGCCCACACGA
TAGGCAAGTCGTTCGCGGCGAAACACGTTACGAAGCGGTGTGTTGGAGAC
TGCAAGAGCGTTTTCTACCTCAACAAAAGGACGCACCACGAGGACCTCGG
AGAAGATGGTCTCACGACGCACACCTTCTACCCAATGCCTCTATTGGAGG
ACTTGGTTTCATCTACAAGTGTTGGTGGCGCACTCTTCGGATCTTCCCTG
CGGATCATGGAGCTCTTCGCTTCACTTGCCTGCCATGACCACATGCGGGT
GCACCCGGATGGCCGTAGGACGAACAAGACCCAGCGGCGCCTCCTCGAGA
CGCCCTTCATCGGTCGACACGGGTTGTCTTCAACGCAGTACGACTTCCCC
GTTGAACTCTACGAGAAGAGCGAACTAGAAGGGTTCGGCGTGGGGATAGA
TGAGACTTTAACTGTAGACGCTACTACAGACGCGACACCCTCGTTGGTAG
GTAGGTACTTCGCCTGTGATTTCGGCCCTACCTGCTGCCGGCGGTCAATG
AAGGTTAGTGAACTTGACGCCGATGCCCACACGATAGGCAAGTCGTTCGC
GGCGAAACACGTTACGAAGCGGTGTGTTGGAGACTGCAAGAGCGTTTTCT
ACCTCAACAAAAGGACGCACCACGAGGACCTCGGAGAAGATGGTCTCACG
ACGCACACCTTCTACCCA
back to top