mRNA_Ecto-sp9_F_contig8971.17164.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8971.17164.1
Unique NamemRNA_Ecto-sp9_F_contig8971.17164.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8971.17164.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC8_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.080e-30
Identity = 69/112 (61.61%), Postives = 74/112 (66.07%), Query Frame = 2 
Query:   62 RRGWLVLMRHRIAHDLVATASSSPPRSRVESAFSGQTATPSETKEDANDGGCELPGDGDINSAGAFREIPRRLRRSRVERAMPSL*KYQRWTAVSPTVEERSRYAMICGVQW 397
            RRGWLVLMRHR AHDLVATASSSPPRS VESAFSG+TATPS+TKEDANDGGCELPGDGDINSAGA                        + TA S   E R+    +C  QW
Sbjct:  237 RRGWLVLMRHRFAHDLVATASSSPPRSCVESAFSGKTATPSKTKEDANDGGCELPGDGDINSAGAS----------------------PKGTAPSEAFEGRTSQHSLCKCQW 326
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BLAST of mRNA_Ecto-sp9_F_contig8971.17164.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J8_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 4.810e-25
Identity = 61/87 (70.11%), Postives = 65/87 (74.71%), Query Frame = 2 
Query:    2 DETYVADHIHALLRRTSGWRRRGWLVLMRHRIAHDLVATASSSPPRSRVESAFSGQTATP--SETKEDANDGGCELPGDGDINSAGA 256
            +ET VAD I  +LRR S W RRGWLVLMRHRIAHD +A  SSS P S VES F  QTATP  SETKEDANDGGCEL   GDI+ AGA
Sbjct:  423 NETSVADRILEMLRRASAWERRGWLVLMRHRIAHDPLAAGSSSRPPSFVESEFGDQTATPHDSETKEDANDGGCELSVHGDIDLAGA 509
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8971.17164.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J7_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 6.490e-5
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 2 
Query:    2 DETYVADHIHALLRRTSGWRRRG 70
            DETYVADHIH LLRRTSGWRRRG
Sbjct:  227 DETYVADHIHDLLRRTSGWRRRG 249
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8971.17164.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.080e-3061.61protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Ankyrin4.810e-2570.11repeat protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
Ankyrin6.490e-595.65repeat protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8971contigEcto-sp9_F_contig8971:1440..1845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue6.2e-11
Seed eggNOG ortholog2880.D7G6J8
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size406
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8971.17164.1prot_Ecto-sp9_F_contig8971.17164.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8971 1522..1758 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930957.3325646-UTR-Ecto-sp9_F_contig8971:1439..15211622930957.3325646-UTR-Ecto-sp9_F_contig8971:1439..1521Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8971 1440..1521 +
1692278966.7298126-UTR-Ecto-sp9_F_contig8971:1439..15211692278966.7298126-UTR-Ecto-sp9_F_contig8971:1439..1521Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8971 1440..1521 +
1622930957.3677752-UTR-Ecto-sp9_F_contig8971:1758..18451622930957.3677752-UTR-Ecto-sp9_F_contig8971:1758..1845Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8971 1759..1845 +
1692278966.7608874-UTR-Ecto-sp9_F_contig8971:1758..18451692278966.7608874-UTR-Ecto-sp9_F_contig8971:1758..1845Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8971 1759..1845 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930957.351655-CDS-Ecto-sp9_F_contig8971:1521..17581622930957.351655-CDS-Ecto-sp9_F_contig8971:1521..1758Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8971 1522..1758 +
1692278966.744943-CDS-Ecto-sp9_F_contig8971:1521..17581692278966.744943-CDS-Ecto-sp9_F_contig8971:1521..1758Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8971 1522..1758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8971.17164.1

>prot_Ecto-sp9_F_contig8971.17164.1 ID=prot_Ecto-sp9_F_contig8971.17164.1|Name=mRNA_Ecto-sp9_F_contig8971.17164.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=79bp
MRHRIAHDLVATASSSPPRSRVESAFSGQTATPSETKEDANDGGCELPGD
GDINSAGAFREIPRRLRRSRVERAMPSL*
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mRNA from alignment at Ecto-sp9_F_contig8971:1440..1845+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8971.17164.1 ID=mRNA_Ecto-sp9_F_contig8971.17164.1|Name=mRNA_Ecto-sp9_F_contig8971.17164.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=406bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8971:1440..1845+ (Ectocarpus species9 EcSCA_722f female)
CGACGAGACCTATGTTGCTGACCATATTCACGCCCTATTGAGGAGGACTA
GTGGATGGAGACGCCGCGGTTGGCTGGTCCTCATGCGCCACCGTATTGCA
CATGATCTCGTTGCCACTGCATCATCCTCACCGCCTCGATCGCGTGTAGA
GTCAGCCTTCAGCGGCCAGACCGCAACCCCCAGCGAGACGAAGGAGGACG
CCAACGACGGAGGTTGCGAACTGCCCGGAGATGGGGACATCAATTCGGCA
GGTGCTTTCCGAGAGATACCGCGCCGCCTGAGGCGTTCGAGGGTCGAACG
AGCCATGCCTTCACTCTGAAAGTACCAGCGGTGGACAGCAGTGTCCCCAA
CGGTGGAGGAAAGGTCCAGGTATGCGATGATCTGCGGGGTGCAGTGGAAT
GGCCCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8971:1440..1845+

>mRNA_Ecto-sp9_F_contig8971.17164.1 ID=mRNA_Ecto-sp9_F_contig8971.17164.1|Name=mRNA_Ecto-sp9_F_contig8971.17164.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8971:1440..1845+ (Ectocarpus species9 EcSCA_722f female)
ATGCGCCACCGTATTGCACATGATCTCGTTGCCACTGCATCATCCTCACC
GCCTCGATCGCGTGTAGAGTCAGCCTTCAGCGGCCAGACCGCAACCCCCA
GCGAGACGAAGGAGGACGCCAACGACGGAGGTTGCGAACTGCCCGGAGAT
GGGGACATCAATTCGGCAGGTGCTTTCCGAGAGATACCGCGCCGCCTGAG
GCGTTCGAGGGTCGAACGAGCCATGCCTTCACTCTGAATGCGCCACCGTA
TTGCACATGATCTCGTTGCCACTGCATCATCCTCACCGCCTCGATCGCGT
GTAGAGTCAGCCTTCAGCGGCCAGACCGCAACCCCCAGCGAGACGAAGGA
GGACGCCAACGACGGAGGTTGCGAACTGCCCGGAGATGGGGACATCAATT
CGGCAGGTGCTTTCCGAGAGATACCGCGCCGCCTGAGGCGTTCGAGGGTC
GAACGAGCCATGCCTTCACTCTGA
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