mRNA_Ecto-sp9_F_contig8969.17159.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8969.17159.1
Unique NamemRNA_Ecto-sp9_F_contig8969.17159.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8969.17159.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH8_ECTSI)

HSP 1 Score: 427 bits (1098), Expect = 3.490e-133
Identity = 306/315 (97.14%), Postives = 307/315 (97.46%), Query Frame = 1 
Query:    1 ERLVEFSTCLEDEALYGLMSSLQALAVVDLANTSTVLPQERSIAREREAAXXXXXXXXXXXXXXXXXXXXXASGLVSFVGAAARGVGAAMSEGREVLNRDXXXXXXXXXXXXXXXXXXXXXKAAKGGPGEARAHIPWVSSRLVVECAVANTWRLPVVWELVSGHLRVVAKAREPAKREYAVRALRELIVDGVQRLHPLPAASSPAPPDSSNDNTASPEAIG-TGTGPTPPANAPSPXXGSSPSSAADAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXPSGQEEGFLPNFLGLRARLEGFGEEEAPFRWVFDCDVG 942
            ERLVEFSTCLEDEALYGLMSSLQALAVVDLANTSTVLPQERSIAREREAAXXXXXXXXXXXXXXXXXXXXXASGLVSFVGAAARGVGAAMSEGREVLNRDXXXXXXXXXXXXXXXXXXX  KAAKGG GEARAHIPWVSSRLVVECAVANTWRLPVVWELVSGHLRVVAKAREPAKREYAVRALRELIVDGVQRLHPLPAASSPAPPDSSNDNTASPEAIG TGTGPTPPANAPSPXXG+SPSSAADAPTXXXXXXXXXXXXXXXXXXXXXXX    PSGQEEGFLPNFLGLRARLEGFGEEEAPFRWVFDCDVG
Sbjct:  806 ERLVEFSTCLEDEALYGLMSSLQALAVVDLANTSTVLPQERSIAREREAAXXXXXXXXXXXXXXXXXXXXXASGLVSFVGAAARGVGAAMSEGREVLNRDXXXXXXXXXXXXXXXXXXXSAKAAKGGLGEARAHIPWVSSRLVVECAVANTWRLPVVWELVSGHLRVVAKAREPAKREYAVRALRELIVDGVQRLHPLPAASSPAPPDSSNDNTASPEAIGSTGTGPTPPANAPSPXXGNSPSSAADAPTXXXXXXXXXXXXXXXXXXXXXXXNGP-PSGQEEGFLPNFLGLRARLEGFGEEEAPFRWVFDCDVG 1119
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BLAST of mRNA_Ecto-sp9_F_contig8969.17159.1 vs.
Match: Mon2_C (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX0_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 2.720e-67
Identity = 157/178 (88.20%), Postives = 159/178 (89.33%), Query Frame = 1 
Query:  427 VVECAVANTWRLPVVWELVSGHLRVVAKAREPAKREYAVRALRELIVDGVQRLHPLPAASSPAPPDSSNDNTASPEAIGTGTGPTPPANAPSPXXGSSPSSAADAPTXXXXXXXXXXXXXXXXXXXXXXXXXXX------PSGQEEGFLPNFLGLRARLEGFGEEEAPFRWVFDCDVG 942
            VVECAVANTWRLPVVWELVSGHLRVVAKAREPAKREYAVRALRELIVDGVQRLHPLPAASSPAPPD S DNTA PEAI TGTGPTPPANAPSPXX   PS  A+A  XXXXXXXXXXXXXXXXXXXXXXXXX        PSGQEEGFLPNFLGLRARLEGFGEE+APFRWVFDCDVG
Sbjct:   23 VVECAVANTWRLPVVWELVSGHLRVVAKAREPAKREYAVRALRELIVDGVQRLHPLPAASSPAPPDGSTDNTAPPEAISTGTGPTPPANAPSPXXXXXPSXXANAXXXXXXXXXXXXXXXXXXXXXXXXXXXTPRGGNGHPSGQEEGFLPNFLGLRARLEGFGEEDAPFRWVFDCDVG 200
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BLAST of mRNA_Ecto-sp9_F_contig8969.17159.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C0_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.410e-20
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 ERLVEFSTCLEDEALYGLMSSLQALAVVDLANTSTVLPQERSIAREREA 147
            ERLVEFSTCLEDEALYGLMSSLQALAVVDLANTSTVLPQERS+AREREA
Sbjct:   42 ERLVEFSTCLEDEALYGLMSSLQALAVVDLANTSTVLPQERSVAREREA 90
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8969.17159.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized3.490e-13397.14protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Mon2_C2.720e-6788.20domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized2.410e-2097.96protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8969contigEcto-sp9_F_contig8969:2514..5046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score431.4
Seed ortholog evalue3.6e-118
Seed eggNOG ortholog2880.D8LQH8
KEGG koko:K18466
KEGG Pathwayko04144,map04144
EggNOG free text desc.protein transport
EggNOG OGsKOG1848@1,KOG1848@2759
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-10_005690.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size945
Cds size942
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8969.17159.1prot_Ecto-sp9_F_contig8969.17159.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8969 2516..5046 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930956.2189407-CDS-Ecto-sp9_F_contig8969:2515..30311622930956.2189407-CDS-Ecto-sp9_F_contig8969:2515..3031Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8969 2516..3031 -
1692278966.223531-CDS-Ecto-sp9_F_contig8969:2515..30311692278966.223531-CDS-Ecto-sp9_F_contig8969:2515..3031Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8969 2516..3031 -
1622930956.2356071-CDS-Ecto-sp9_F_contig8969:3574..37491622930956.2356071-CDS-Ecto-sp9_F_contig8969:3574..3749Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8969 3575..3749 -
1692278966.2380002-CDS-Ecto-sp9_F_contig8969:3574..37491692278966.2380002-CDS-Ecto-sp9_F_contig8969:3574..3749Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8969 3575..3749 -
1622930956.3403864-CDS-Ecto-sp9_F_contig8969:4138..42461622930956.3403864-CDS-Ecto-sp9_F_contig8969:4138..4246Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8969 4139..4246 -
1692278966.2549515-CDS-Ecto-sp9_F_contig8969:4138..42461692278966.2549515-CDS-Ecto-sp9_F_contig8969:4138..4246Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8969 4139..4246 -
1622930956.3899999-CDS-Ecto-sp9_F_contig8969:4903..50461622930956.3899999-CDS-Ecto-sp9_F_contig8969:4903..5046Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8969 4904..5046 -
1692278966.2712507-CDS-Ecto-sp9_F_contig8969:4903..50461692278966.2712507-CDS-Ecto-sp9_F_contig8969:4903..5046Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8969 4904..5046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8969.17159.1

>prot_Ecto-sp9_F_contig8969.17159.1 ID=prot_Ecto-sp9_F_contig8969.17159.1|Name=mRNA_Ecto-sp9_F_contig8969.17159.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=314bp
ERLVEFSTCLEDEALYGLMSSLQALAVVDLANTSTVLPQERSIAREREAA
QSQANGAGGEGRGAGAAAVAAASGLVSFVGAAARGVGAAMSEGREVLNRD
RDNRNNSNSNSNSSSNVNISAKAAKGGPGEARAHIPWVSSRLVVECAVAN
TWRLPVVWELVSGHLRVVAKAREPAKREYAVRALRELIVDGVQRLHPLPA
ASSPAPPDSSNDNTASPEAIGTGTGPTPPANAPSPPPGSSPSSAADAPTT
TTSGGGGGGGGGTTAAPPPPRGGNGPPSGQEEGFLPNFLGLRARLEGFGE
EEAPFRWVFDCDVG
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mRNA from alignment at Ecto-sp9_F_contig8969:2514..5046-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8969.17159.1 ID=mRNA_Ecto-sp9_F_contig8969.17159.1|Name=mRNA_Ecto-sp9_F_contig8969.17159.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2533bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8969:2514..5046- (Ectocarpus species9 EcSCA_722f female)
GAGCGTCTAGTGGAGTTCTCGACTTGCCTGGAAGATGAGGCCTTGTACGG
CCTCATGTCCTCGCTGCAGGCGCTAGCGGTGGTGGACTTAGCCAACACGT
CCACCGTGCTGCCGCAGGAGCGCTCTATCGCCAGAGAGCGAGAGTGAGTC
GTCAAGTCGCATGCCGCCACCGTCCCGCGGCGTTGTTTTTTTTTCGTCGG
CCCCTTGACAAGTGCTGTGCAGGGGGTATGTATCGAGCCGGTGTTGACTT
AAAGGTTGCACCTTGTCTTGACGATTTTACCAACGTTAACGTTTGTTTGA
CAAGGCTCCTGTGGACGATGCTTGCTTGTATGCTGTAGTTTGGCAAGGAC
AATTTTGTTTTGTTTTTTGTCGCCGGTCCCCTGAGTGTTATGCAGGGGGT
ATGTATCGAGGCGGTTTTGATCAGGCTTATACCTTTTCTTGACGTTTGTT
GACCAAGTTATTGTACCTGATTTCCTGCCCCTTGCTGGCAGTTCCTGTAC
CTCATTCCTGTCTAGCCGGGCTCTTTGTCTTACTGTACCTTACAGTACCC
CTATGAAAGTTGTCCCTTTTTGAAGTTGCTGTACCTCATCCATTCCCTCG
CCTCCTTGCTAGCACATGCGTTCATATATTGTACCTAAAACCCAACCTCT
AAAGTGGACCCTTGACTATTTTCTGTGACTTAGTCTTCCTGAGGTTCATC
TGTGCCTGTTTGTCGTGGCCCACTCTTTATCGTAAATCAGCTGACTGCAC
CCATTTATGTCACGTGCTGTGCTGTTTGTTCCATGTTCGCGCGCCGGCAG
AGCGGCCCAGTCGCAGGCCAACGGGGCCGGCGGAGAAGGCAGAGGGGCTG
GCGCGGCCGCCGTTGCCGCCGCAAGCGGGCTCGTGTCCTTCGTGGGGGCG
GCAGCGAGGTTAGGGCTAGGGTTAGGGTTAGAGAGACGAGACAACGTTGG
GCCTAGTCGACAGTCGATGACACAGCACAGATTTTTTCCCCTCTCTCTTT
TCATCATATTGCTTGGGGGTCTTGTGTGACAAACGCTGCTCATGTACTCT
TGATTTTTTTTTTTTGTCGTTTTCGGCATCCTTGCGTGATTTTATGCATC
GGTTGTGATTTTTTTTTTTGTCGTTTTCGGCGTCCTTGCGTAATTTTATG
CTTCGGTTCTAAAAAGTGCATCCCCCCCCCCAAAAAAGAAAATCCAAGTC
ATTGACGTTGCAGGCTGAAGCAGTTACAGATTGATGCAGACATCATCCAG
GCTAACGTGTGACTATGACCGTTTCTGCCGCGTGCTTGTTGTGCAAGGGG
TGTTGGCGCGGCCATGTCCGAAGGCCGGGAGGTCTTGAACCGGGATCGGG
ACAACCGCAACAACAGCAACAGCAACAGCAACAGCAGCAGCAACGTGAAC
ATAAGCGCGAAAGCTGCGAAAGGGGGACCCGGGGAAGCTAGAGCTCACAT
CCCCTGGGTTTCATCTCGCCTTGTGAGAACGCTATGTCAGCAGCTGTTCG
TTCGTTCCCGTCTTACTCCTGTCTCCTAGTAAGAAGTACATGGCTTGTGG
ACGCGAGACCCTTCGTCGATTTCAAGCACCATTCGCCCTTGTCTTCCCAC
TGCCTTCTGGGCGAATAGCATCGTCGACGAAAAACCGCACAAACGCCGGG
TCCTCTATCCCCGCTCCGATCACCGACTGTACCCTACCCTACACTGCGGT
GGAAGTATATTTGTTGGTGTGCCCTGTGGTTTGGCTTTTGCACTTTGCGC
GGAGGGGCCAATAGAAAGACGCGGTTGCGCGCACGCTGTTCTCTACACTA
TCTGACGCTCACTTGCGTCGACTGCACGGCGGGTTTTCCTACCGCGGCGT
TTTGGTTCTGAATAAAGCTTGTGCACGGGGTTCCTCCAGCTTCTGGAAAA
AACGACTCTCTCAACCTTCCTCTATTTCCTTTACTCCCTCTTTTGCCAAA
ATAACCAACAGCCGACCTTTCATCACCTGTTCACAACTCCTGGTGCTACT
GCTGCTGTTGCACAGGTCGTCGAGTGCGCCGTGGCCAACACGTGGCGTCT
ACCGGTGGTGTGGGAGCTAGTCTCCGGACACCTCCGGGTAGTCGCCAAGG
CCAGGGAGCCGGCAAAGCGAGAGTACGCGGTGCGGGCGCTCCGCGAGCTC
ATCGTGGACGGCGTGCAAAGGCTCCACCCCCTCCCGGCCGCCTCCTCCCC
CGCTCCTCCAGACAGCAGCAACGACAACACCGCCTCTCCCGAAGCCATTG
GCACTGGCACCGGTCCCACTCCTCCAGCGAATGCCCCTTCCCCTCCACCG
GGAAGCAGCCCTAGCAGTGCTGCCGACGCACCAACCACAACAACGTCGGG
TGGCGGCGGCGGCGGCGGCGGCGGGACAACGGCCGCCCCCCCTCCCCCAA
GGGGAGGGAACGGCCCCCCCAGTGGGCAGGAAGAAGGGTTCCTTCCGAAC
TTTCTGGGTCTGCGAGCCCGCCTCGAAGGGTTCGGAGAAGAAGAGGCGCC
CTTTCGGTGGGTGTTCGACTGCGACGTTGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8969:2514..5046-

>mRNA_Ecto-sp9_F_contig8969.17159.1 ID=mRNA_Ecto-sp9_F_contig8969.17159.1|Name=mRNA_Ecto-sp9_F_contig8969.17159.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1884bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8969:2514..5046- (Ectocarpus species9 EcSCA_722f female)
GAGCGTCTAGTGGAGTTCTCGACTTGCCTGGAAGATGAGGCCTTGTACGG
CCTCATGTCCTCGCTGCAGGCGCTAGCGGTGGTGGACTTAGCCAACACGT
CCACCGTGCTGCCGCAGGAGCGCTCTATCGCCAGAGAGCGAGAGAGCGTC
TAGTGGAGTTCTCGACTTGCCTGGAAGATGAGGCCTTGTACGGCCTCATG
TCCTCGCTGCAGGCGCTAGCGGTGGTGGACTTAGCCAACACGTCCACCGT
GCTGCCGCAGGAGCGCTCTATCGCCAGAGAGCGAGAAGCGGCCCAGTCGC
AGGCCAACGGGGCCGGCGGAGAAGGCAGAGGGGCTGGCGCGGCCGCCGTT
GCCGCCGCAAGCGGGCTCGTGTCCTTCGTGGGGGCGGCAGCGAGAGCGGC
CCAGTCGCAGGCCAACGGGGCCGGCGGAGAAGGCAGAGGGGCTGGCGCGG
CCGCCGTTGCCGCCGCAAGCGGGCTCGTGTCCTTCGTGGGGGCGGCAGCG
AGGGGTGTTGGCGCGGCCATGTCCGAAGGCCGGGAGGTCTTGAACCGGGA
TCGGGACAACCGCAACAACAGCAACAGCAACAGCAACAGCAGCAGCAACG
TGAACATAAGCGCGAAAGCTGCGAAAGGGGGACCCGGGGAAGCTAGAGCT
CACATCCCCTGGGTTTCATCTCGCCTTGGGTGTTGGCGCGGCCATGTCCG
AAGGCCGGGAGGTCTTGAACCGGGATCGGGACAACCGCAACAACAGCAAC
AGCAACAGCAACAGCAGCAGCAACGTGAACATAAGCGCGAAAGCTGCGAA
AGGGGGACCCGGGGAAGCTAGAGCTCACATCCCCTGGGTTTCATCTCGCC
TTGTCGTCGAGTGCGCCGTGGCCAACACGTGGCGTCTACCGGTGGTGTGG
GAGCTAGTCTCCGGACACCTCCGGGTAGTCGCCAAGGCCAGGGAGCCGGC
AAAGCGAGAGTACGCGGTGCGGGCGCTCCGCGAGCTCATCGTGGACGGCG
TGCAAAGGCTCCACCCCCTCCCGGCCGCCTCCTCCCCCGCTCCTCCAGAC
AGCAGCAACGACAACACCGCCTCTCCCGAAGCCATTGGCACTGGCACCGG
TCCCACTCCTCCAGCGAATGCCCCTTCCCCTCCACCGGGAAGCAGCCCTA
GCAGTGCTGCCGACGCACCAACCACAACAACGTCGGGTGGCGGCGGCGGC
GGCGGCGGCGGGACAACGGCCGCCCCCCCTCCCCCAAGGGGAGGGAACGG
CCCCCCCAGTGGGCAGGAAGAAGGGTTCCTTCCGAACTTTCTGGGTCTGC
GAGCCCGCCTCGAAGGGTTCGGAGAAGAAGAGGCGCCCTTTCGGTGGGTG
TTCGACTGCGACGTTGGAGTCGTCGAGTGCGCCGTGGCCAACACGTGGCG
TCTACCGGTGGTGTGGGAGCTAGTCTCCGGACACCTCCGGGTAGTCGCCA
AGGCCAGGGAGCCGGCAAAGCGAGAGTACGCGGTGCGGGCGCTCCGCGAG
CTCATCGTGGACGGCGTGCAAAGGCTCCACCCCCTCCCGGCCGCCTCCTC
CCCCGCTCCTCCAGACAGCAGCAACGACAACACCGCCTCTCCCGAAGCCA
TTGGCACTGGCACCGGTCCCACTCCTCCAGCGAATGCCCCTTCCCCTCCA
CCGGGAAGCAGCCCTAGCAGTGCTGCCGACGCACCAACCACAACAACGTC
GGGTGGCGGCGGCGGCGGCGGCGGCGGGACAACGGCCGCCCCCCCTCCCC
CAAGGGGAGGGAACGGCCCCCCCAGTGGGCAGGAAGAAGGGTTCCTTCCG
AACTTTCTGGGTCTGCGAGCCCGCCTCGAAGGGTTCGGAGAAGAAGAGGC
GCCCTTTCGGTGGGTGTTCGACTGCGACGTTGGA
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