mRNA_Ecto-sp9_F_contig8965.17156.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8965.17156.1
Unique NamemRNA_Ecto-sp9_F_contig8965.17156.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig8965.17156.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit TIM50 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI3_ECTSI)

HSP 1 Score: 468 bits (1204), Expect = 1.070e-161
Identity = 237/254 (93.31%), Postives = 239/254 (94.09%), Query Frame = 1
Query:    1 YSSPVKDKLLLDCPLPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLDDGSDPTADTTLYDLAPFLRALATQGVADFRDVLRPHVGEDSNAVVADFRSKVNAVRQKEDAEKNKGLGGLVRQIXXXXXXXXXXXXXXGMLTSKDIVGDAPETLSPGMA 762
            YSSPVKDKLLLDCPLPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSL+DGSDPTADT LYDLAPFLRALATQGVADFRDVLRPHVGEDSNAVVADFRSKVNAVRQKEDAEK+KGLGGLVRQI              GMLTSKDIVGDAPETLSPGMA
Sbjct:  220 YSSPVKDKLLLDCPLPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTALYDLAPFLRALATQGVADFRDVLRPHVGEDSNAVVADFRSKVNAVRQKEDAEKSKGLGGLVRQIAPVVGAGGPAAGMGGMLTSKDIVGDAPETLSPGMA 473          
BLAST of mRNA_Ecto-sp9_F_contig8965.17156.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit TIM50 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ2_9STRA)

HSP 1 Score: 217 bits (553), Expect = 1.660e-64
Identity = 118/265 (44.53%), Postives = 162/265 (61.13%), Query Frame = 1
Query:    1 YSSPVKDKLLLDCP---LPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDP-----------QGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLDDGSDPTADTTLYDLAPFLRALATQGVADFRDVLRPHVGEDSNAVVADFRSKVNAVRQKEDAEKNKGLGGLVRQIXXXXXXXXXXXXXXGML-TSKDIVGDAPETLS 750
            ++ P  DKLL D P   LPP    PPTLVLDLE TL+   + R+ GWRVA+RPG++ FL+EMS  YEIV+FT +  G A+  +T +DP            G  S R+YRD T + +G +VKDLS +NR ++  +IIDD  +   +QP+N I++K + +  G DP ADT L DL PFLRALA +GV D+R+VLRP  G+DS+AVVA++R +V+A    +    N GLGGL+R                  + +S+D+VG AP   S
Sbjct:  137 FTEPSSDKLLPDWPPSELPPDTPCPPTLVLDLENTLVHMDWHRRTGWRVARRPGVEEFLREMSMYYEIVIFTSAHVGSAEPIVTSLDPAVSRARGVEVSSGYTSHRLYRDATLFSNGTHVKDLSKINRDMKHVIIIDDEPEAFQLQPDNGIRIKPYEIKPGEDPHADTALTDLIPFLRALAMEGVRDYRNVLRPFRGQDSDAVVAEYRRRVDAANAAQRERDNSGLGGLLRGAKRGHLVPDAQPTRRSAIPSSRDLVGAAPADAS 401          
BLAST of mRNA_Ecto-sp9_F_contig8965.17156.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDJ8_PYTOL)

HSP 1 Score: 178 bits (451), Expect = 2.150e-50
Identity = 102/224 (45.54%), Postives = 143/224 (63.84%), Query Frame = 1
Query:    1 YSSPVKDKLLLDCPLP---PGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLDDGSDPTADTTLYDLAPFLRALATQGVADFRDVLRPHVGEDSNAVVADFRSK----VNAVRQKEDAEKNKGLGGLVR 651
            Y+ P K+KLL D P+P   P   P P LVLDLE TL+ + ++RK GWR AKRPG+D FL+ ++Q YEIVVF+ +   +A+E + ++D +  +   + R+ TRY +  +VKDLS LNR L Q +IIDD+     +QP+NAI +KA++  DG D   D  L DL PFL+ALA++ V DFR VL     ED   V+ D  +K    V A+  +++ EK KGLGG +R
Sbjct:  143 YTEPSKEKLLPDWPIPQVPPDTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLEALAQYYEIVVFSQNHMYMAEEILVKLDRKQNVLHLLARESTRYFNSAHVKDLSKLNRDLRQVVIIDDDPSAYQLQPDNAIPIKAYT--DGRD-RGDHELKDLIPFLKALASERVGDFRSVLAEFRDEDG--VIRDLPTKYGARVRALEMQKEQEKQKGLGGFIR 361          
BLAST of mRNA_Ecto-sp9_F_contig8965.17156.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit TIM50 (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y4U5_9STRA)

HSP 1 Score: 176 bits (447), Expect = 1.210e-49
Identity = 105/226 (46.46%), Postives = 146/226 (64.60%), Query Frame = 1
Query:    1 YSSPVKDKLLLDCPLP--PGALPP-PTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLDDGSDPTADTTLYDLAPFLRALATQGVADFRDVLRPHVGE--DSNAVVADFRSK----VNAVRQKEDAEKNKGLGGLVR 651
            ++ P + KLL D P+P  P   PP P LVLDLE TL+ + ++RK GWR AKRPG+D FL+ + Q YEIV+F+ + G  A+E +T++DP+      + RD TRY++G +VKDL+ LNR L Q +I+DD+     +QPENAI +K F+  DG D   D  L DL PFL+ALA++ V DFR V    +GE  D + V+ D  SK    V+A+  +++ EK KG GG VR
Sbjct:  152 FTDPSRQKLLPDWPIPQVPADTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQYYEIVIFSQNYG--AEEIVTKLDPKQCALHCLSRDSTRYLNGAHVKDLANLNRDLRQVVILDDDPAAYQLQPENAIPIKPFT--DGRD-REDHELKDLIPFLKALASERVPDFRSV----IGEFRDDDGVIRDVASKYGARVHAMEMQKEQEKRKGFGGFVR 368          
BLAST of mRNA_Ecto-sp9_F_contig8965.17156.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit TIM50 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GPP0_9STRA)

HSP 1 Score: 175 bits (443), Expect = 9.950e-49
Identity = 88/223 (39.46%), Postives = 141/223 (63.23%), Query Frame = 1
Query:    1 YSSPVKDKLLLDCP----LPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLDDGSDPTADTTLYDLAPFLRALATQGVADFRDVLRPHVGEDSNAVVADFRSKVNAVRQKEDAEKNKGLGGLVRQI 657
            ++ P++ KLL D P    +P     PPTLVLDLEGTL+ + + R+ GWR AKRPG+D FL++M+Q YEIV+F+++   + +  +  +DP+     ++ R+ TRY +G Y+KDLS LNR L++ +IIDD+    S+QPEN I + AF     +    DT+L+D+  FL AL  +GV DF  +L      ++  +  ++ SK+  ++ +E+  +N+GLG LV+ +
Sbjct:  113 FTEPIRQKLLPDWPFFPNIPADTPCPPTLVLDLEGTLVKSTWDRRHGWRHAKRPGVDKFLQDMAQYYEIVLFSNNTASIVEPIMMSLDPENVCWHKLTREATRYENGVYIKDLSHLNRSLKKMVIIDDDEQAFSLQPENGIHINAFK---NARDKNDTSLHDIGKFLAALVHEGVEDFPALLSTFKSRNAEDISNEYLSKLRTIKDREEENRNRGLGRLVKSL 332          
BLAST of mRNA_Ecto-sp9_F_contig8965.17156.1 vs.
Match: FCP1 (homology domain-containing protein n=1 Tax=Nitrososphaeria archaeon TaxID=2268198 RepID=A0A7J3D5D1_9ARCH)

HSP 1 Score: 169 bits (429), Expect = 3.720e-48
Identity = 91/213 (42.72%), Postives = 136/213 (63.85%), Query Frame = 1
Query:    1 YSSPVKDKLLLDCPLPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLDDGSDPTADTTLYDLAPFLRALATQGVADFRDVLRPHVGEDSNAVVADFRSKVNAVRQKEDAEKNKGLG 639
            Y+ P  D+LL D  LPP A    TLVLDL+  L+ + +TR +GWR  KRPG++ FLK+M+Q YE+VV+T  +   AD  + ++DPQ  +  R+YRD TRY++GK+V+DLS LNR L+Q L+I  + D  ++QPENAIK+  ++    ++ + DTTL DL PFL A+    V D RDV+R +   D   +   FR ++  V++ +   ++ G G
Sbjct:   73 YADPPSDRLLPD--LPPHARHIKTLVLDLDDVLIHSDWTRARGWRTFKRPGVEDFLKDMAQYYELVVYTSQLPTYADPILDRLDPQRLLQYRLYRDSTRYVNGKHVRDLSMLNRDLKQVLLITASPDAYALQPENAIKLDKWT----TEKSDDTTLIDLLPFLEAIVRTSVTDVRDVVRSY---DGQYIPTAFRERMAKVQEAKLRRQSSGKG 276          
BLAST of mRNA_Ecto-sp9_F_contig8965.17156.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit TIM50 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G064_9STRA)

HSP 1 Score: 174 bits (441), Expect = 5.380e-48
Identity = 101/258 (39.15%), Postives = 154/258 (59.69%), Query Frame = 1
Query:    1 YSSPVKDKLLLDCPLP--PGALP-PPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLDDGSDPT--ADTTLYDLAPFLRALATQGVADFRDVLRPHVGEDSNAVVADFRSKVNAVRQKEDAEKNKGLGGLVRQIXXXXXXXXXXXXXXGM-------LTSKDIVGDAP 738
            ++ P  DKLL D P+P  P  LP P TLVLDLE TL+ + + RK GWR AKRPG+D FL++M+Q YEIV++T ++ G+A+  I  +D Q  I   +YR+ TR+IDG +VKDLS+LNR +++ + ID++   + + P+N I+VK ++     DP    D TL  + P L  +  +G  D   +LR + G D++ +V  ++S+V+ +R+  D   + GLG L ++                M       +TSKD+VGDAP
Sbjct:  152 FTKPHADKLLPDWPMPNVPPDLPCPHTLVLDLENTLVSSTWDRKHGWRHAKRPGVDQFLRKMAQYYEIVLYTSTIQGVAEPVIQNLDKQQAIMHALYRESTRFIDGVHVKDLSSLNRNVKKIIAIDNDEKALQLHPDNLIRVKPYT-----DPRNRTDDTLEKIMPILIEIVNKGYDDIPAILRQYRGMDADEIVEHYQSRVDEIRKNRDQIYSSGLGWLNQRRNNPMPEPELPPASSSMRPSGTPAITSKDLVGDAP 404          
BLAST of mRNA_Ecto-sp9_F_contig8965.17156.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit TIM50 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KV46_9STRA)

HSP 1 Score: 171 bits (433), Expect = 1.220e-47
Identity = 104/226 (46.02%), Postives = 146/226 (64.60%), Query Frame = 1
Query:    1 YSSPVKDKLLLDCPLP--PGALPP-PTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLDDGSDPTADTTLYDLAPFLRALATQGVADFRDVLRPHVGE--DSNAVVADFRSK----VNAVRQKEDAEKNKGLGGLVR 651
            ++ P + KLL D P+P  P   PP P LVLDLE TL+ + ++RK GWR AKRPG+D FL+ + Q YEIV+F+ + G  A+E + ++DP+      + RD TRY++G +VKDLS+LNR L+Q +I+DD+     +QPENAI VK F+  +G D   D  L DL PFL+ALA++ V DFR+V    +GE  D + VV D  SK    V+ +  ++  +K KG GG VR
Sbjct:  141 FTDPSRLKLLPDWPIPQVPADTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQYYEIVIFSQNYG--AEEIVQKLDPKQCALHILSRDATRYLNGAHVKDLSSLNRDLQQVVILDDDPAAYQLQPENAIPVKPFT--NGRDRD-DHELKDLIPFLKALASERVPDFRNV----IGEFRDEDGVVRDLASKYGARVHQLEMQKQQQKKKGFGGFVR 357          
BLAST of mRNA_Ecto-sp9_F_contig8965.17156.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit TIM50 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIV8_GLOUD)

HSP 1 Score: 171 bits (432), Expect = 1.330e-47
Identity = 99/224 (44.20%), Postives = 141/224 (62.95%), Query Frame = 1
Query:    1 YSSPVKDKLLLDCPLP--PGALPP-PTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLDDGSDPTADTTLYDLAPFLRALATQGVADFRDVLRPHVGEDSNAVVAD----FRSKVNAVRQKEDAEKNKGLGGLVR 651
            ++ P ++KLL D P+P  P   PP P LVLDLE TL+ + ++RK GWR AKRPG+D FL+ + Q YEIV+F  S   +A+E + ++DP+      + RD TRY+ G +VKDL+ LNR L Q +I+DD+     +QPENAI +K F+     D   D  L +L PFL+ALA++ V DFR VL     ED   V+ D    + ++V A+  +++ EK KGLGG +R
Sbjct:  140 FTDPSREKLLPDWPIPQVPADTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQYYEIVIF--SQNPMAEEVVMKLDPKQCALHILSRDATRYLKGAHVKDLANLNRDLRQVVIVDDDPAAYQLQPENAIPIKPFTNGSARD---DRELTELIPFLKALASERVPDFRTVLGEFRDEDG--VIRDLPSRYSARVRALEMQKEQEKQKGLGGFIR 356          
BLAST of mRNA_Ecto-sp9_F_contig8965.17156.1 vs.
Match: Queuosine (salvage protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJH2_PYTIN)

HSP 1 Score: 176 bits (446), Expect = 2.990e-47
Identity = 101/222 (45.50%), Postives = 142/222 (63.96%), Query Frame = 1
Query:    1 YSSPVKDKLLLDCPLP---PGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLDDGSDPTADTTLYDLAPFLRALATQGVADFRDVLRPHVGEDS--NAVVADFRSKVNAVRQKEDAEKNKGLGGLVR 651
            ++ P KDKLL D P+P   P   P P LVLDLE TL+ + ++RK GWR AKRPG+D FL+ ++Q YEIVVF+++   +AD+ +T++D + T+   + R+ TRY +G +VKDLS LNR L   +IIDD+     +QPENAI +K +   DG D   D  L DL PFL+ALA++ + DFR VL     ED     + A + S+V A   ++  E+ KGLGG +R
Sbjct:  479 WTEPSKDKLLPDWPIPQVPPDTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLAQYYEIVVFSNNHQFMADDVVTRLDRKQTVLHILARESTRYYNGAHVKDLSKLNRDLRHVVIIDDDPLAYQLQPENAIPIKPYM--DGRDRD-DHELKDLIPFLKALASERIPDFRTVLAEFRDEDGVVRDLPAKYASRVRAQELQQQQERQKGLGGFLR 697          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8965.17156.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Mitochondrial1.070e-16193.31import inner membrane translocase subunit TIM50 n=... [more]
Mitochondrial1.660e-6444.53import inner membrane translocase subunit TIM50 n=... [more]
Uncharacterized2.150e-5045.54protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Mitochondrial1.210e-4946.46import inner membrane translocase subunit TIM50 (F... [more]
Mitochondrial9.950e-4939.46import inner membrane translocase subunit TIM50 n=... [more]
FCP13.720e-4842.72homology domain-containing protein n=1 Tax=Nitroso... [more]
Mitochondrial5.380e-4839.15import inner membrane translocase subunit TIM50 n=... [more]
Mitochondrial1.220e-4746.02import inner membrane translocase subunit TIM50 n=... [more]
Mitochondrial1.330e-4744.20import inner membrane translocase subunit TIM50 n=... [more]
Queuosine2.990e-4745.50salvage protein (Fragment) n=1 Tax=Pythium insidio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8965contigEcto-sp9_F_contig8965:612..3330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score469.5
Seed ortholog evalue9.6e-130
Seed eggNOG ortholog2880.D8LBI3
Preferred nameTIMM50
KEGG koko:K17496
KEGG TC3.A.8.1
GOsGO:0001836,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0004725,GO:0005048,GO:0005102,GO:0005126,GO:0005134,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005886,GO:0006464,GO:0006470,GO:0006605,GO:0006626,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006915,GO:0006996,GO:0007005,GO:0007006,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009987,GO:0012501,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016311,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0017038,GO:0019538,GO:0019866,GO:0023052,GO:0030150,GO:0030943,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0035335,GO:0036211,GO:0042277,GO:0042578,GO:0042886,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044455,GO:0044464,GO:0044743,GO:0044877,GO:0045184,GO:0046902,GO:0046907,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0061024,GO:0065002,GO:0065007,GO:0065008,GO:0070013,GO:0070585,GO:0070727,GO:0070851,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0090559,GO:0097190,GO:0098796,GO:0098798,GO:0098800,GO:0140096,GO:1901564,GO:1990542
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG5190@1,KOG2832@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTim50 homolog, mitochondrial inner membrane protein of TIM23 complex
Ec32 orthologEc-27_003880.1
Exons5
Model size764
Cds size762
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8965.17156.1prot_Ecto-sp9_F_contig8965.17156.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8965 612..3329 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930955.946192-CDS-Ecto-sp9_F_contig8965:611..7391622930955.946192-CDS-Ecto-sp9_F_contig8965:611..739Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8965 612..739 +
1692278966.1235788-CDS-Ecto-sp9_F_contig8965:611..7391692278966.1235788-CDS-Ecto-sp9_F_contig8965:611..739Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8965 612..739 +
1622930955.9689596-CDS-Ecto-sp9_F_contig8965:1035..11411622930955.9689596-CDS-Ecto-sp9_F_contig8965:1035..1141Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8965 1036..1141 +
1692278966.137902-CDS-Ecto-sp9_F_contig8965:1035..11411692278966.137902-CDS-Ecto-sp9_F_contig8965:1035..1141Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8965 1036..1141 +
1622930955.9833043-CDS-Ecto-sp9_F_contig8965:1914..20761622930955.9833043-CDS-Ecto-sp9_F_contig8965:1914..2076Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8965 1915..2076 +
1692278966.146602-CDS-Ecto-sp9_F_contig8965:1914..20761692278966.146602-CDS-Ecto-sp9_F_contig8965:1914..2076Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8965 1915..2076 +
1622930956.0053508-CDS-Ecto-sp9_F_contig8965:2470..25811622930956.0053508-CDS-Ecto-sp9_F_contig8965:2470..2581Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8965 2471..2581 +
1692278966.155867-CDS-Ecto-sp9_F_contig8965:2470..25811692278966.155867-CDS-Ecto-sp9_F_contig8965:2470..2581Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8965 2471..2581 +
1622930956.0182157-CDS-Ecto-sp9_F_contig8965:3074..33291622930956.0182157-CDS-Ecto-sp9_F_contig8965:3074..3329Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8965 3075..3329 +
1692278966.166681-CDS-Ecto-sp9_F_contig8965:3074..33291692278966.166681-CDS-Ecto-sp9_F_contig8965:3074..3329Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8965 3075..3329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8965.17156.1

>prot_Ecto-sp9_F_contig8965.17156.1 ID=prot_Ecto-sp9_F_contig8965.17156.1|Name=mRNA_Ecto-sp9_F_contig8965.17156.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=254bp
YSSPVKDKLLLDCPLPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRP
GLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRY
IDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLDDGSDP
TADTTLYDLAPFLRALATQGVADFRDVLRPHVGEDSNAVVADFRSKVNAV
RQKEDAEKNKGLGGLVRQIGPVVGAGGPAAGMGGMLTSKDIVGDAPETLS
PGMA
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mRNA from alignment at Ecto-sp9_F_contig8965:612..3330+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8965.17156.1 ID=mRNA_Ecto-sp9_F_contig8965.17156.1|Name=mRNA_Ecto-sp9_F_contig8965.17156.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2719bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8965:612..3330+ (Ectocarpus species9 EcSCA_722f female)
TACTCGAGCCCCGTGAAAGATAAGCTCCTGCTAGACTGCCCGCTGCCCCC GGGAGCGTTGCCGCCCCCGACGCTTGTGCTGGACCTTGAGGGAACCCTCC TCGGCACCATCTACACCCGCAAGAAAGGGTGAGCTTGAGGAGCTGTGCGT GCTCGCAAGCCAGAGGCTGATTTTCATGCGTGCGCTGTTCGTGTCATACG TAGGTGGAACCGTCTGTGCGGTGCGTAGGGCTTAAATTGTTATTGTGTTT AGAGTATGATGCCGCGTGGTCGTCTTTGGGAAAGTCTCGAGGGTGGCTTG ACCCTCCATCATACATCCCTCTGGTCAGGCAAGTTTGTAACCACCGCCTT GCCGCACGCATCGTGCCGCTATTCTCATGATTTTGTTGCCTCCTGTCTCA TCTCTCTGTGCTGTCCTGAAACAGGTGGAGAGTTGCCAAGCGACCAGGCC TGGATGCGTTCTTGAAGGAGATGTCGCAGCTATACGAGATCGTCGTCTTC ACGGACAGCATGGGGGGCTTGGCGGATGAGGTGGGGACGGACACACAGGG AGAGGGAGGGAGAGAAGGAGGCAGACGTAGATAGGATCCCGACATACGCT GCAAACGCCCACACGACTAGAGATGTATTCGAGTGTCGATCTTTTGATGC CATTCTGGATCGGCAGGTGGTATACCTGGGCGCAGCAAGATACTGCTGTT GCTGCTGCCCCGTGTGCTGTCTCTTGTTTTCGTTAGATGGTACTATTATA TACTACCAGTGGCTTTTGGTTACGGAGAATCTATGCACTCCTCTTACTGC GGCGACCAACATCTGTGGCACATATATCCCTCCACGTTTTGGACACGCAA TCCTTACACCTTGCTGGCACTGCTCTCTGAGGGCACAACTTTGTCCGATC GCCAAACTTGTCATATTGGAAAAGTGTGATTTCCGCGGTCTCAAGAAATA CGCTCGCCGCACAGTAGTCCCCTGTGAGCAAAACGTAGAGTGCACGATCG TGGCTGCGGAAACGTGCCCCCCGTGCTACACCCGAGGACGGGTTGGCGAT CTTTGAAACGCTGACAAAATAGTCATCCGTTGGGCGAACGCGTTTTTTTT ACGACGTACTTCAGACCTTTTTGGTGGGGACGCGGGAAGCGGGGGCGACG CGCACAGAGGGTCTTTTCTCACGACCGTCTGGATGACAACCTCTCATGTT AGTTATTTACTTCTTCTAGAAGTATCTTTTTTTTTCATGAAGTATTATTG CTTCCTGTGCCTCAACCTACCGCCGCCGCTGCCTTTCCTCGCGATAAAAA TAGTGGATCACCCAGATGGACCCACAGGGGACGATCAGCCAGAGGGTCTA CCGGGACGGCACTAGGTACATCGACGGCAAGTACGTCAAGGATCTCTCCG CCCTCAACCGCCCGCTGGAGCAAACGCTCATTATCGACGACAACGCCGAC TGCATCTCCATGCAGGTGTGTCTTTCTTTCGTTAGTGGGCATCCACCACG CTGCCCGACTGAACACTGATATTACGTCAGTGTACAAATTTCATTTCGCG TATGTGTTTGCTAGTATCGTATTCTAGACATGGGCACCTGCGTCGGTTGC CGCCGGTGTCGTGTCTTGTATTCGTTGCATATTTTCCAACGTTGTTGTGG CGAGCGTCGATGGCTGCATTTCGCGAAGAGGGTTTATTTTGCTTGACGCG GCAGTCGTCAGGTTGGCCGTGAGAGACAGCGGTGGGTGGGGTTGATCCTC ACCAAGTAGGTGCGATTCTTGCTTGGGCCGGCACTTCACCTGAACAAGAA CAAGAGAATGGCAATCCGTGATTCCAAACACGTCCCCCCCCCCCCCCCCC CCCCTCCAGCCTGAGAACGCCATCAAGGTGAAGGCGTTTTCGCTTGACGA TGGATCGGATCCCACCGCGGACACCACCTTGTACGACTTGGCTCCATTCC TTAGGGCGTTGGCGACACAGGTGACTTTGAGTCTATATTCCTCCTAGCGC GCACGGTTATCGAAGTGCAGTAGTTGTTTCGGGTTGGTTGGTGCGTTGTT GGATATCCTACTGCTGTATCGAGCTTGGTGCTTCAGCGCGGCCGCTTGGT GGACATCCATGAGGGGGCATCGCACGACACATGTGTGGGAGATTGCTGTG TGTTCCGTGCTCCAACCGCCCCCCCCCCCCTACGTTGGTCCTGTTTTAGC AACACGCGGTTGTCGTCTGTCGTCGGCTGCTTTCTACTCGTCGTTGTTCT TTTGTGCGTGTCACTGGCCTGCTCCGAGGGGCATTTTGGCATGTTTGATG TATTTTGGTTCGATCAAGAGAAACACCAACCGAATAGGGATTTACTTGCA TGGCTGCGCCCGAAGCCACAAGCATGCACGCGCCAACTTCAACACCACCA CCACCACCACCACCACCACCACCACCACCACCCCGCCGCGTTTTCCTGCC CCTCTCCTTGCAGGGGGTTGCCGACTTCCGCGACGTCCTGCGGCCACACG TGGGCGAGGATTCCAACGCCGTTGTCGCCGACTTCCGCTCCAAGGTGAAC GCCGTGAGGCAAAAGGAGGACGCGGAGAAAAACAAGGGTCTCGGGGGACT GGTGCGGCAGATCGGCCCGGTCGTCGGCGCCGGGGGCCCCGCAGCTGGGA TGGGGGGTATGCTGACAAGCAAGGACATCGTGGGGGACGCGCCGGAGACC CTGTCCCCCGGCATGGCGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8965:612..3330+

>mRNA_Ecto-sp9_F_contig8965.17156.1 ID=mRNA_Ecto-sp9_F_contig8965.17156.1|Name=mRNA_Ecto-sp9_F_contig8965.17156.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1524bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8965:612..3330+ (Ectocarpus species9 EcSCA_722f female)
TACTCGAGCCCCGTGAAAGATAAGCTCCTGCTAGACTGCCCGCTGCCCCC
GGGAGCGTTGCCGCCCCCGACGCTTGTGCTGGACCTTGAGGGAACCCTCC
TCGGCACCATCTACACCCGCAAGAAAGGTACTCGAGCCCCGTGAAAGATA
AGCTCCTGCTAGACTGCCCGCTGCCCCCGGGAGCGTTGCCGCCCCCGACG
CTTGTGCTGGACCTTGAGGGAACCCTCCTCGGCACCATCTACACCCGCAA
GAAAGGGTGGAGAGTTGCCAAGCGACCAGGCCTGGATGCGTTCTTGAAGG
AGATGTCGCAGCTATACGAGATCGTCGTCTTCACGGACAGCATGGGGGGC
TTGGCGGATGAGGTGGAGAGTTGCCAAGCGACCAGGCCTGGATGCGTTCT
TGAAGGAGATGTCGCAGCTATACGAGATCGTCGTCTTCACGGACAGCATG
GGGGGCTTGGCGGATGAGTGGATCACCCAGATGGACCCACAGGGGACGAT
CAGCCAGAGGGTCTACCGGGACGGCACTAGGTACATCGACGGCAAGTACG
TCAAGGATCTCTCCGCCCTCAACCGCCCGCTGGAGCAAACGCTCATTATC
GACGACAACGCCGACTGCATCTCCATGCAGTGGATCACCCAGATGGACCC
ACAGGGGACGATCAGCCAGAGGGTCTACCGGGACGGCACTAGGTACATCG
ACGGCAAGTACGTCAAGGATCTCTCCGCCCTCAACCGCCCGCTGGAGCAA
ACGCTCATTATCGACGACAACGCCGACTGCATCTCCATGCAGCCTGAGAA
CGCCATCAAGGTGAAGGCGTTTTCGCTTGACGATGGATCGGATCCCACCG
CGGACACCACCTTGTACGACTTGGCTCCATTCCTTAGGGCGTTGGCGACA
CAGCCTGAGAACGCCATCAAGGTGAAGGCGTTTTCGCTTGACGATGGATC
GGATCCCACCGCGGACACCACCTTGTACGACTTGGCTCCATTCCTTAGGG
CGTTGGCGACACAGGGGGTTGCCGACTTCCGCGACGTCCTGCGGCCACAC
GTGGGCGAGGATTCCAACGCCGTTGTCGCCGACTTCCGCTCCAAGGTGAA
CGCCGTGAGGCAAAAGGAGGACGCGGAGAAAAACAAGGGTCTCGGGGGAC
TGGTGCGGCAGATCGGCCCGGTCGTCGGCGCCGGGGGCCCCGCAGCTGGG
ATGGGGGGTATGCTGACAAGCAAGGACATCGTGGGGGACGCGCCGGAGAC
CCTGTCCCCCGGCATGGCGGGGGTTGCCGACTTCCGCGACGTCCTGCGGC
CACACGTGGGCGAGGATTCCAACGCCGTTGTCGCCGACTTCCGCTCCAAG
GTGAACGCCGTGAGGCAAAAGGAGGACGCGGAGAAAAACAAGGGTCTCGG
GGGACTGGTGCGGCAGATCGGCCCGGTCGTCGGCGCCGGGGGCCCCGCAG
CTGGGATGGGGGGTATGCTGACAAGCAAGGACATCGTGGGGGACGCGCCG
GAGACCCTGTCCCCCGGCATGGCG
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