mRNA_Ecto-sp9_F_contig8962.17152.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8962.17152.1
Unique NamemRNA_Ecto-sp9_F_contig8962.17152.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8962.17152.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS6_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 9.520e-29
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 3 
Query:  327 MMVKNRRLPAALGGHYNEHLVELVQRAPADWEASCPVPPQYPAAMDPVGTGGRSGLARS 503
            M+VKNR LPAALGGHYNE+LVELVQRA ADWEASCPVPPQYPAAMDP GTG RSGLARS
Sbjct:    1 MLVKNRGLPAALGGHYNEYLVELVQRATADWEASCPVPPQYPAAMDPEGTGERSGLARS 59
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BLAST of mRNA_Ecto-sp9_F_contig8962.17152.1 vs.
Match: 3'-5' (exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.040e-22
Identity = 59/115 (51.30%), Postives = 73/115 (63.48%), Query Frame = 3 
Query:  162 NKDNLPDHSSTAAERGTDGRGQDYHRGPC*AVTAY-RQHYIAHSVFLEFNLR*NLRMMVKNRRLPAALGGHYNEHLVELVQRAPADWEASCPVPPQYPAAMDPVGTGGRSGLARS 503
            NK  L D+         +G    YHR     + +Y     +A SV LEFN R NLRMM+KNR LPAALGGHYN++LVE +QR  ADW++S PV P++PAA+D V TG R GL RS
Sbjct:  643 NKHGLTDYRCVRGTNDVEG----YHRYLRTLLASYCASPSLAQSVLLEFNYRWNLRMMIKNRGLPAALGGHYNQYLVESIQRDTADWDSSHPVFPEWPAAIDSVDTGERFGLERS 753
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8962.17152.1 vs.
Match: 3'-5' (exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 5.340e-10
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 3 
Query:  279 IAHSVFLEFNLR*NLRMMVKNRRLPAALGGHYNEHLVELVQRA 407
            +A SV LEFN R NL+MMVKNR LPA LG HYN+HLVE++QRA
Sbjct:  723 LAQSVLLEFNFRWNLKMMVKNRGLPAELGEHYNQHLVEIIQRA 765
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8962.17152.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E8_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 8.100e-9
Identity = 30/50 (60.00%), Postives = 34/50 (68.00%), Query Frame = 3 
Query:  291 VFLEFNLR*NLRMMVKNRRLPAALGGHYNEHLVELVQRAPADWEASCPVP 440
            + LEFNL  NLRMMVKNR LPAALGGHYN +  +L+QRA        P P
Sbjct:    1 MLLEFNLGWNLRMMVKNRGLPAALGGHYNNYRGKLIQRAMGTGSRVAPSP 50
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8962.17152.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized9.520e-2989.83protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
3'-5'1.040e-2251.30exonuclease domain-containing protein n=1 Tax=Ecto... [more]
3'-5'5.340e-1072.09exonuclease domain-containing protein n=1 Tax=Ecto... [more]
Uncharacterized8.100e-960.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8962contigEcto-sp9_F_contig8962:3258..5555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size506
Cds size402
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8962.17152.1prot_Ecto-sp9_F_contig8962.17152.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8962 3966..5555 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930955.6010342-UTR-Ecto-sp9_F_contig8962:3257..32981622930955.6010342-UTR-Ecto-sp9_F_contig8962:3257..3298Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8962 3258..3298 +
1692278965.9676714-UTR-Ecto-sp9_F_contig8962:3257..32981692278965.9676714-UTR-Ecto-sp9_F_contig8962:3257..3298Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8962 3258..3298 +
1622930955.617083-UTR-Ecto-sp9_F_contig8962:3903..39651622930955.617083-UTR-Ecto-sp9_F_contig8962:3903..3965Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8962 3904..3965 +
1692278965.9773982-UTR-Ecto-sp9_F_contig8962:3903..39651692278965.9773982-UTR-Ecto-sp9_F_contig8962:3903..3965Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8962 3904..3965 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930955.6312194-CDS-Ecto-sp9_F_contig8962:3965..40891622930955.6312194-CDS-Ecto-sp9_F_contig8962:3965..4089Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8962 3966..4089 +
1692278965.9867406-CDS-Ecto-sp9_F_contig8962:3965..40891692278965.9867406-CDS-Ecto-sp9_F_contig8962:3965..4089Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8962 3966..4089 +
1622930955.6451893-CDS-Ecto-sp9_F_contig8962:5277..55551622930955.6451893-CDS-Ecto-sp9_F_contig8962:5277..5555Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8962 5278..5555 +
1692278965.996397-CDS-Ecto-sp9_F_contig8962:5277..55551692278965.996397-CDS-Ecto-sp9_F_contig8962:5277..5555Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8962 5278..5555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8962.17152.1

>prot_Ecto-sp9_F_contig8962.17152.1 ID=prot_Ecto-sp9_F_contig8962.17152.1|Name=mRNA_Ecto-sp9_F_contig8962.17152.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=134bp
MAMYYAVGKHKDCLPDRSSEQGQPSRPQQYSSRERHGRTRSGLSPWTLLG
SYSISPTLHSALGVPGVQPPVKLEDDGQEPSLARGAGRALQRTPGGAGPA
GPGGLGGELPRPPAVSGRHGPSRHGREEWARPEY
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mRNA from alignment at Ecto-sp9_F_contig8962:3258..5555+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8962.17152.1 ID=mRNA_Ecto-sp9_F_contig8962.17152.1|Name=mRNA_Ecto-sp9_F_contig8962.17152.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2298bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8962:3258..5555+ (Ectocarpus species9 EcSCA_722f female)
CGCGTACGGTCCGGACACGATCACAGCTCGCGGCTGATTGGGTGAGGAAA
ACACCGGGGGCGACGACGCGATGGTGATTGGCTGGACGGAGTAGTGGATG
TTACGTAGTTTTCTGAAATCAATATGTCACGAATGATTCTTGGTCTCTGT
GGAAGAGTGAGAGGGTATCCTGACGGTTATGTATAGCTGGCATGTACATG
TGTACATCCGTTGGAGACTGGCAGAGTGGGAGGGGAGGGTATCCTGACGG
TTTTGAATAGCTGGGATGTGCATACCATGGTACTGCTGCTGTAGGCGGTT
TTCGATTCCAGGTAGGATAACGGAGCAGTATTTAGTGGTACCATATACCA
ATGCTCAACGGACAAAAACGAGGCAACAGAAACACATCGCGGATGGACGG
ACTTGTCGAAAGCAGTGCAAGGTAATTACGCTGTAGCACCGGCGTGTACA
TGACTGAGGTACGTCAGTAGCGGACGTTAACAGCGGGTAGACTACATGTA
AACAACAAAAAATATACATAGCCGGCGGCACGTTTTTGGGTAGGGCTCCA
TTTTGGTAATGCAAGCCAATCACAGACCCCCATTTAGAACCACTTTTGGT
AATGCAAGCCAATCACACCCCGCCATTTTTGGTAATGCAAACTCAGACCA
TCCCAACCCAGACCAACCCTCGCTGGTATGCCGCTAGCGATTGAGCGATC
CTGACGGAATGGCGATGTACTACGCCGTTGGCAAGCACAAGGATTGCCTT
CCCGACCGTAGTAGTGAACAAGGACAACCTTCCCGACCACAGCAGTACAG
CAGCAGAGAGAGGCACGGACGGACGAGGTCAGGTGAGATTGATTGTATGC
ACTGCTGTCAAGAAGCAGCAGCTTGTTACAAGTTGTTTCCGTGAACACAC
AGGCAGGCCTGGATACGCCTGGGATCACGTCTGCTGTGTGTGTTGCCTTT
AGGCTGCAGCAATATGTAGACTAAAGGTGGCTAGCGAGAAGGAGGATAGA
GGGCTCAATAACTCTGGTCTGTTCCCGACAGGCGCTATTCAGAGGGACCG
GCGCTGTTCAAAAAAGTACGTACGTATCAGTCTGTGCCCAGCAAATCCGG
CCCTACCGCACTACAATATACAGGGCCACCGGCGTTATTAATCCGGCGTT
GTTGAGGGCCAAATTGCGGCATCTCGTCAAGCACGGTTTGGAGGTTTTGA
AGGCACGGGCGGTACAGGGTATAGTCAATGTGTCGGCTCTACTGCTGCTG
TGAAGTCTACGGCAAGCAGCTGTATGATGTGTCTACGTAAATATAAGGCA
CAGCAGGAGTAGTACCACTGCAGTACATGTATGTATGGCACTGCTGTAGA
CTGTAAGAGAGAGCAAGTTTGCCGTAGTCTAACGGGCACACTACTGTAGT
ACAACATGTACATGCTACATGTACAAACATCACAGTAGTAGAGGACTCAT
GCGGTACTCTGTAGCGATATCTCCCATGCCCGACACATCGCCTTCGACAT
CTGGCTGCTTTCTAGGGCCCATGGTTTTCAGAATTTTTCGTGATCGCGTT
TGTGTTGATGTTTCTCGGTCCTTTTATTTGCTCTTTGGACCCTTCTAGGG
GCTGCTGGCCTGTGCCCACGGAGGGCATCCCCGTCAGAGGGCGTCCCCGT
CAATTACACGAGTATGGATACTAGGAGGTTTTTCATTACACTGTTGAATA
TTTGAGTTAACAGTTATGGAAATAAACGTTGTCGTCGTTCGCGAGGGTGT
GCGTAGTGCAGAGGTAGACTAGCTGCCTTGGATGCTGGTGGAGACCAACC
CCAACCAACCGCTGCTCTGTGCGGCAACTGGAACCGGATTTGTTTTGCCC
AAAATACTTCCGAGTGATCTGGTGCTTCGTGTATGAATGACGGGCGCCCT
TTGGGTTGTTGCCAAATTCAATCGAAGTCAATATCGCTTGTTTATTCAGC
CCCTCTCTGTTTCTACAAAGGCTGCCACCCCTCTTGCTGCGTCCCAACCA
CTGTTCTCTTGGTGAAACAGGACTATCACCGTGGACCCTGCTAGGCAGTT
ACAGCATATCGCCAACATTACATAGCGCACTCGGTGTTCCTGGAGTTCAA
CCTCCGGTGAAACTTGAGGATGATGGTCAAGAACCGTCGCTTGCCCGCGG
CGCTGGGAGGGCACTACAACGAACACCTGGTGGAGCTGGTCCAGCGGGCC
CCGGCGGACTGGGAGGCGAGTTGCCCCGTCCCCCCGCAGTATCCGGCCGC
CATGGACCCAGTAGGCACGGGCGGGAGGAGTGGGCTCGCCCGGAGTAT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8962:3258..5555+

>mRNA_Ecto-sp9_F_contig8962.17152.1 ID=mRNA_Ecto-sp9_F_contig8962.17152.1|Name=mRNA_Ecto-sp9_F_contig8962.17152.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8962:3258..5555+ (Ectocarpus species9 EcSCA_722f female)
ATGGCGATGTACTACGCCGTTGGCAAGCACAAGGATTGCCTTCCCGACCG
TAGTAGTGAACAAGGACAACCTTCCCGACCACAGCAGTACAGCAGCAGAG
AGAGGCACGGACGGACGAGGTCAGATGGCGATGTACTACGCCGTTGGCAA
GCACAAGGATTGCCTTCCCGACCGTAGTAGTGAACAAGGACAACCTTCCC
GACCACAGCAGTACAGCAGCAGAGAGAGGCACGGACGGACGAGGTCAGGA
CTATCACCGTGGACCCTGCTAGGCAGTTACAGCATATCGCCAACATTACA
TAGCGCACTCGGTGTTCCTGGAGTTCAACCTCCGGTGAAACTTGAGGATG
ATGGTCAAGAACCGTCGCTTGCCCGCGGCGCTGGGAGGGCACTACAACGA
ACACCTGGTGGAGCTGGTCCAGCGGGCCCCGGCGGACTGGGAGGCGAGTT
GCCCCGTCCCCCCGCAGTATCCGGCCGCCATGGACCCAGTAGGCACGGGC
GGGAGGAGTGGGCTCGCCCGGAGTATGACTATCACCGTGGACCCTGCTAG
GCAGTTACAGCATATCGCCAACATTACATAGCGCACTCGGTGTTCCTGGA
GTTCAACCTCCGGTGAAACTTGAGGATGATGGTCAAGAACCGTCGCTTGC
CCGCGGCGCTGGGAGGGCACTACAACGAACACCTGGTGGAGCTGGTCCAG
CGGGCCCCGGCGGACTGGGAGGCGAGTTGCCCCGTCCCCCCGCAGTATCC
GGCCGCCATGGACCCAGTAGGCACGGGCGGGAGGAGTGGGCTCGCCCGGA
GTAT
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