mRNA_Ecto-sp9_F_contig8916.17104.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8916.17104.1
Unique NamemRNA_Ecto-sp9_F_contig8916.17104.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8916.17104.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV6_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 2.780e-50
Identity = 84/94 (89.36%), Postives = 87/94 (92.55%), Query Frame = 3 
Query:  138 RDMVGRVTKAHMASTRQDLSERQLLGEDRLHEDFVAQVVTPALLHAANDIAAHPVNEIGKHESIVCKCTRKAMAWGRLSNGGYSTTNARAYSKR 419
            RDMV RVTKAHMASTRQDLSERQLL EDRLHEDFVAQVVT ALLH AN+IAAHPVNE+GKHESIVCKCTRKA A GRL NGG+STTNARAYSKR
Sbjct:   47 RDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQVVTSALLHTANNIAAHPVNEVGKHESIVCKCTRKARACGRLCNGGFSTTNARAYSKR 140
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BLAST of mRNA_Ecto-sp9_F_contig8916.17104.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF40_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.290e-28
Identity = 57/86 (66.28%), Postives = 69/86 (80.23%), Query Frame = 3 
Query:  153 RVTKAHMASTRQDLSERQLLGEDRLHEDFVAQVVTPALLHAANDIAAHPVNEIGKHESIVCKCTRKAMAWGRLSNGGYSTTNARAY 410
            R TKA+ ASTR+ L+   LLG +RL EDF+ QVVTPALLHAANDIAA PVNEIG HE+IVCK TRK+ AW +LS GG+ + +ARA+
Sbjct:   85 RFTKAYQASTRKTLTLGYLLGPERLKEDFLGQVVTPALLHAANDIAALPVNEIGTHETIVCKVTRKSRAWIKLSAGGFGSADARAF 170
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8916.17104.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L779_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 8.300e-28
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 2 
Query:  245 AGRHAGSTARRERHRRPPGQRDWQTREHRVQVHEEGDGVGQAFQRRIQHHQRQGIFQE 418
            AGRHAGSTARRERH RPPGQRDWQTREHRVQVHEEG+G GQAFQR +QHHQRQGIFQE
Sbjct:   20 AGRHAGSTARRERHSRPPGQRDWQTREHRVQVHEEGEGAGQAFQRWMQHHQRQGIFQE 77
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8916.17104.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R4_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.230e-27
Identity = 58/86 (67.44%), Postives = 69/86 (80.23%), Query Frame = 3 
Query:  153 RVTKAHMASTRQDLSERQLLGEDRLHEDFVAQVVTPALLHAANDIAAHPVNEIGKHESIVCKCTRKAMAWGRLSNGGYSTTNARAY 410
            R TKAH ASTR+ L+   LLG +RL +DF+ QVVTPALLHAANDIAA PVNEIG HE+IVCK TRK+ AW +LS GG+ + NARA+
Sbjct:  342 RFTKAHQASTRKALTLGFLLGPERLKDDFLGQVVTPALLHAANDIAALPVNEIGTHETIVCKVTRKSRAWIKLSAGGFGSANARAF 427
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8916.17104.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR20_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 2.170e-27
Identity = 58/86 (67.44%), Postives = 67/86 (77.91%), Query Frame = 3 
Query:  153 RVTKAHMASTRQDLSERQLLGEDRLHEDFVAQVVTPALLHAANDIAAHPVNEIGKHESIVCKCTRKAMAWGRLSNGGYSTTNARAY 410
            R TKAH ASTR+ L+   LLG +RL EDF+ QVVTPALLHAANDIAA PVNEIG HE+IVCK  RK+ AW +LS GG  + NARA+
Sbjct:  192 RFTKAHQASTRKVLTLGYLLGPERLKEDFLGQVVTPALLHAANDIAALPVNEIGTHETIVCKVIRKSKAWIKLSAGGIGSANARAF 277
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8916.17104.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ7_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 4.530e-26
Identity = 57/86 (66.28%), Postives = 67/86 (77.91%), Query Frame = 3 
Query:  153 RVTKAHMASTRQDLSERQLLGEDRLHEDFVAQVVTPALLHAANDIAAHPVNEIGKHESIVCKCTRKAMAWGRLSNGGYSTTNARAY 410
            R TKAH ASTR+ L+   LLG +RL EDF+ QVVTPALL AANDIAA PVNEIG HE+IVCK TRK+ AW +LS GG+ + NA A+
Sbjct:  375 RFTKAHQASTRKALTLGYLLGPERLKEDFLGQVVTPALLQAANDIAALPVNEIGTHETIVCKVTRKSRAWIKLSAGGFGSANAWAF 460
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8916.17104.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A1_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.360e-24
Identity = 53/86 (61.63%), Postives = 60/86 (69.77%), Query Frame = 3 
Query:  153 RVTKAHMASTRQDLSERQLLGEDRLHEDFVAQVVTPALLHAANDIAAHPVNEIGKHESIVCKCTRKAMAWGRLSNGGYSTTNARAY 410
            R TKAHM STR+DLSE QL+GEDRLHEDF+AQ                    IG  ES+VCKCTRKA AWGRLSNGGYS+TNA+A+
Sbjct:   45 RYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQ--------------------IGTLESVVCKCTRKARAWGRLSNGGYSSTNAKAF 110
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8916.17104.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Q8_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 6.140e-24
Identity = 53/86 (61.63%), Postives = 60/86 (69.77%), Query Frame = 3 
Query:  153 RVTKAHMASTRQDLSERQLLGEDRLHEDFVAQVVTPALLHAANDIAAHPVNEIGKHESIVCKCTRKAMAWGRLSNGGYSTTNARAY 410
            R TKAHM STR+DLSE QL+GEDRLHEDF+AQ                    IG  ES+VCKCTRKA AWGRLSNGGYS+TNA+A+
Sbjct:   15 RYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQ--------------------IGTLESVVCKCTRKARAWGRLSNGGYSSTNAKAF 80
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8916.17104.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL7_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 8.950e-24
Identity = 52/86 (60.47%), Postives = 59/86 (68.60%), Query Frame = 3 
Query:  153 RVTKAHMASTRQDLSERQLLGEDRLHEDFVAQVVTPALLHAANDIAAHPVNEIGKHESIVCKCTRKAMAWGRLSNGGYSTTNARAY 410
            R TKAHM STR+DLSE QL+GE RLHEDF+AQ                    IG  ES+VCKCTRKA AWGRLSNGGYS+TNA+A+
Sbjct:   93 RYTKAHMQSTREDLSEGQLVGEARLHEDFLAQ--------------------IGSLESVVCKCTRKARAWGRLSNGGYSSTNAKAF 158
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8916.17104.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ3_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 5.560e-23
Identity = 53/86 (61.63%), Postives = 60/86 (69.77%), Query Frame = 3 
Query:  153 RVTKAHMASTRQDLSERQLLGEDRLHEDFVAQVVTPALLHAANDIAAHPVNEIGKHESIVCKCTRKAMAWGRLSNGGYSTTNARAY 410
            R TKAHM STR+DLSE QL+GEDRLHEDF+AQ                    IG  ES+VCKCTRKA AWGRLSNGGYS+TNA+A+
Sbjct:  250 RYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQ--------------------IGTLESVVCKCTRKARAWGRLSNGGYSSTNAKAF 315
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8916.17104.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
Uncharacterized2.780e-5089.36protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.290e-2866.28protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.300e-2891.38protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.230e-2767.44protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.170e-2767.44protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.530e-2666.28protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.360e-2461.63protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.140e-2461.63protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.950e-2460.47protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.560e-2361.63protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8916contigEcto-sp9_F_contig8916:3468..5101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size419
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8916.17104.1prot_Ecto-sp9_F_contig8916.17104.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8916 4417..5101 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930949.0698009-UTR-Ecto-sp9_F_contig8916:3467..35981622930949.0698009-UTR-Ecto-sp9_F_contig8916:3467..3598Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8916 3468..3598 +
1692278962.9571295-UTR-Ecto-sp9_F_contig8916:3467..35981692278962.9571295-UTR-Ecto-sp9_F_contig8916:3467..3598Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8916 3468..3598 +
1622930949.0906389-UTR-Ecto-sp9_F_contig8916:4404..44161622930949.0906389-UTR-Ecto-sp9_F_contig8916:4404..4416Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8916 4405..4416 +
1692278962.9669654-UTR-Ecto-sp9_F_contig8916:4404..44161692278962.9669654-UTR-Ecto-sp9_F_contig8916:4404..4416Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8916 4405..4416 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930949.113185-CDS-Ecto-sp9_F_contig8916:4416..45211622930949.113185-CDS-Ecto-sp9_F_contig8916:4416..4521Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8916 4417..4521 +
1692278962.976959-CDS-Ecto-sp9_F_contig8916:4416..45211692278962.976959-CDS-Ecto-sp9_F_contig8916:4416..4521Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8916 4417..4521 +
1622930949.1350527-CDS-Ecto-sp9_F_contig8916:4930..51011622930949.1350527-CDS-Ecto-sp9_F_contig8916:4930..5101Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8916 4931..5101 +
1692278962.987055-CDS-Ecto-sp9_F_contig8916:4930..51011692278962.987055-CDS-Ecto-sp9_F_contig8916:4930..5101Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8916 4931..5101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8916.17104.1

>prot_Ecto-sp9_F_contig8916.17104.1 ID=prot_Ecto-sp9_F_contig8916.17104.1|Name=mRNA_Ecto-sp9_F_contig8916.17104.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=92bp
MVGRVTKAHMASTRQDLSERQLLGEDRLHEDFVAQVVTPALLHAANDIAA
HPVNEIGKHESIVCKCTRKAMAWGRLSNGGYSTTNARAYSKR
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mRNA from alignment at Ecto-sp9_F_contig8916:3468..5101+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8916.17104.1 ID=mRNA_Ecto-sp9_F_contig8916.17104.1|Name=mRNA_Ecto-sp9_F_contig8916.17104.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1634bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8916:3468..5101+ (Ectocarpus species9 EcSCA_722f female)
CCACCCCAACCAGCAAAACTGCTTGACCCAGCCGGCCGCTAGAGGGTAAA
GTGGACCTCAACAGGACAGCAGGTCAAGGCACACACTCGGGAATAATCGG
GCGCAACCTTTCCTCGGCATCGCAATCTCAGGTGAAAGCTGCCTCGTATA
GACATTCACCGGCGCACTCACACCCGGACGCACGGAATACAGCAGCAGCC
TACATGTAGAAGTGCAAAATTGTCCAACGGCAACGAGAGAAAGACCCGCA
TGGCAGCAGAACAGCAGTCAGTCTCTGTTGGTGCGTGTAGCATACGTCAC
GCTCGCACGCTTGCACGCTTGCGCACATAGGCGTCTCTCACACCGTTTCG
CGGATGCGTGCTTTTCTTGACGCGTTTGCGCAAAGCTTGTACGAAGAGAA
ATGATAGTTTCTGTAGGTCGCGTAAGATACCACACCCGTGGTATCTTACG
CTGTACAATATGAACCCCAAGTCTATGTACTATGTGCGACGCGTTTGTGC
ATTCGTACCATGTATCCCCTGCCTGTTTTTGTCTAGTTCAACCTACATGT
ATGGCACCACGACCGTTATGACCGTGATCGTTGCTGTTTGTATAGCATGA
CTGCTGATGATCCGGCGTTGTGTTTTACACCCCTCTAATAACCTATTTGC
TGTAGGCATACAATGCATACCTCGTCTTACATGTAGATCAGATTTCTCCC
ATGGATTGTTCCCGCTGTTACCTTGGGTAATTTCGATGGAAGAAGTAAGT
GGGTGGTGCCGCTCGGTGGTATTGCCTGTTCGAACTCTGTTCAACTACAT
ATGTGTGTTGTAACAAGAGCGGTGCGGATGATGAGATATCTGTGTCCTGT
AGGGAGTGCAGATGTGGTCTTACCCATCCAACGTTTCTATTGTTCTCGGT
CTGGTGCGTGCCTTTTGCGTTTGTTGTCTCTTTTTAGCGTGCTAGGGACA
TGGTCGGGCGAGTCACCAAGGCGCACATGGCGTCGACACGCCAGGACCTG
TCCGAGAGGCAACTGCTGGGAGAGGATCGGTTACACGAGGACTTCGTGGC
GCAGGTGTAATTTGTTTCCATCTGATTTGCCCTCAACGACTGGTGTCCCC
CCGTCACTTTTTTTCATCATCACACCTATGTACACGATCGCAGTTCAAAC
CCATCGCTTGTTCCGCGTTCCCACGAGACGAAGTCGTGTATTAGCACACG
TGAAGAAATACAGAGATTCGCCCTCCTGACGTTGTAAGAGAACACCCCAG
CGCGCAGCAGGAAAATAATAAAATAATGAGACGATAAGAGTATACGAACG
CCGGAGCATGTACACAACATTTCGATTGCATGGCAGGCACATAGTACCGG
TAGGAAGCAGCAGCACGGTACACGCACTGCACCGCTACACATGTCTCCGC
ATGCACGCATTCAGCGGCACCTTTCTTTCCCCCCCTGCCTGCTGACGTCA
TGTTGTACACCAGGTCGTCACGCCGGCTCTACTGCACGCCGCGAACGACA
TCGCCGCCCACCCGGTCAACGAGATTGGCAAACACGAGAGCATCGTGTGC
AAGTGCACGAGGAAGGCGATGGCGTGGGGCAGGCTTTCCAACGGCGGATA
CAGCACCACCAACGCCAGGGCATATTCCAAGAGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8916:3468..5101+

>mRNA_Ecto-sp9_F_contig8916.17104.1 ID=mRNA_Ecto-sp9_F_contig8916.17104.1|Name=mRNA_Ecto-sp9_F_contig8916.17104.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8916:3468..5101+ (Ectocarpus species9 EcSCA_722f female)
ATGGTCGGGCGAGTCACCAAGGCGCACATGGCGTCGACACGCCAGGACCT
GTCCGAGAGGCAACTGCTGGGAGAGGATCGGTTACACGAGGACTTCGTGG
CGCAGATGGTCGGGCGAGTCACCAAGGCGCACATGGCGTCGACACGCCAG
GACCTGTCCGAGAGGCAACTGCTGGGAGAGGATCGGTTACACGAGGACTT
CGTGGCGCAGGTCGTCACGCCGGCTCTACTGCACGCCGCGAACGACATCG
CCGCCCACCCGGTCAACGAGATTGGCAAACACGAGAGCATCGTGTGCAAG
TGCACGAGGAAGGCGATGGCGTGGGGCAGGCTTTCCAACGGCGGATACAG
CACCACCAACGCCAGGGCATATTCCAAGAGAGTCGTCACGCCGGCTCTAC
TGCACGCCGCGAACGACATCGCCGCCCACCCGGTCAACGAGATTGGCAAA
CACGAGAGCATCGTGTGCAAGTGCACGAGGAAGGCGATGGCGTGGGGCAG
GCTTTCCAACGGCGGATACAGCACCACCAACGCCAGGGCATATTCCAAGA
GA
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