prot_Ecto-sp9_F_contig8915.17103.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig8915.17103.1
Unique Name	prot_Ecto-sp9_F_contig8915.17103.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	111

Homology

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BLAST of mRNA_Ecto-sp9_F_contig8915.17103.1 vs.
Match: MRG (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ16_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 6.620e-40
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0

Query:    1 VQKSQYYFFQAVEFLLPGKFLFIFSAKSTKYPDIEPVQFSVTVKAPASLKKSSSWTSGGAXXXXXXXVKGGSRSPHGSSTSEDRNGAA 88
            VQKSQYYFFQAVEFLLPGKFLFIFSAKSTKYPDIEPVQFSVTVKAPASLKKSSSWTSGGAXXXXXXX KGG+RSPHGS+TSEDRNGAA
Sbjct:  108 VQKSQYYFFQAVEFLLPGKFLFIFSAKSTKYPDIEPVQFSVTVKAPASLKKSSSWTSGGAXXXXXXXXKGGNRSPHGSTTSEDRNGAA 195

[Close]

BLAST of mRNA_Ecto-sp9_F_contig8915.17103.1 vs.
Match: MRG (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ0_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 4.490e-37
Identity = 86/96 (89.58%), Postives = 86/96 (89.58%), Query Frame = 0

Query:    1 VQKSQYYFFQAVEFLLPGKFLFIFSAKSTKYPDIEPVQFSVTVKAPASLKKSSSWTSGGAXXXXXXX--------VKGGSRSPHGSSTSEDRNGAA 88
            VQKSQYYFFQAVEFLLPGKFLFIFSAKSTKYPDIEPVQFSVTVKAPASLKKSSSWTSGGAXXXXXXX        VKGGSR  HGSSTSEDRNGAA
Sbjct:  108 VQKSQYYFFQAVEFLLPGKFLFIFSAKSTKYPDIEPVQFSVTVKAPASLKKSSSWTSGGAXXXXXXXXXXXXXXKVKGGSRPSHGSSTSEDRNGAA 203

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig8915.17103.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig8915.17103.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
MRG	6.620e-40	96.59	domain-containing protein n=1 Tax=Ectocarpus silic...	[more]
MRG	4.490e-37	89.58	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..24
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 25..111
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig8915	contig	Ecto-sp9_F_contig8915:3528..4818 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig8915.17103.1	mRNA_Ecto-sp9_F_contig8915.17103.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig8915 3528..4818 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig8915.17103.1 ID=prot_Ecto-sp9_F_contig8915.17103.1|Name=mRNA_Ecto-sp9_F_contig8915.17103.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=111bp
VQKSQYYFFQAVEFLLPGKFLFIFSAKSTKYPDIEPVQFSVTVKAPASLK
KSSSWTSGGAGAGAGAKVKGGSRSPHGSSTSEDRNGAAAAAAAVAAAVAA
AEMAEKKDKRE