prot_Ecto-sp9_F_contig8913.17101.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig8913.17101.1
Unique Nameprot_Ecto-sp9_F_contig8913.17101.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length484
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8913.17101.1 vs.
Match: Letm1 (RBD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRP1_ECTSI)

HSP 1 Score: 878 bits (2268), Expect = 0.000e+0
Identity = 459/483 (95.03%), Postives = 464/483 (96.07%), Query Frame = 0 
Query:    1 MRLSEFLSVLNLAAVAQGGHGTAGWGSKSAAVMSDRRVFNDRHRQHQSRSAVAFFGRRPRTTTPRVTGSSKAESAVDALPDASGAGANGVRGLPAAADTSSADAAGDSAAAPRVSAAQGIVNTFRDFWGHARDGTFALWGNFKARRHTSQDIRKRVKAGHVMTYAEHAHLERGAIDRRKLLQYLIAYAVSPQNFVYVVWYVPGLLPSTFVKPHTVRSKYHRLALERASATWDAVTGLEFRLLKAEEGFKGKPREEGSRQSKKMEKLERQREMVLDVLEADSKRQVFERFQEHMVVPAPASPDSENTAASNNKGTTKSKKPKPQKLKLPPASKGVPNAYIKALGKGTGLSGWWHVSPGFYVRYCLSERLRDLGRMDDVLRTVSLESLSDSDLREACDARAINVGNRLVGDREPQDLRKSLGEWLDLTSPEVAAGSKLGPDTVFLPDRARLLGLGLNCLESARQGRTAELPRKTLAVVGKGGAIP 483
            MRLSEFLSVLNLAAVAQGGHGTAGWGSKSAAV+SDRRVFNDRHRQ QSRSAVAFFGRRPRT+TPRVTGSS+A SAVDALPDASGAGANGVRG PAAADTSS     DSAAAPRVSAAQGIVNTFRDFWGHARDGTFALWGNFK    TSQDIRKRVKAGHVMTYAEHAHLERGA DRRKLLQYLIAYAVSPQNFVYVVWYVPGLLPSTFVKPHT+RSKYHRLALERASATWDAVTGLEFRLLKAEEGFKGKPREEGSRQSKKMEKLERQREMVLDVLEADSKRQVFERFQEHMVV APASPD ENTAASNNKGTTKSKKPKPQKLKLPPASKGVPNAYIK LGKGTGLSGWWHVSPGFYVRYCLSERLRDLG+MDDVLRTVSLESLSDSDLREACDARAINVGNRL GDREPQDLRKSLGEWLDLTSPEVAAGSKLGPDTVFLPDRARLLGLGLNCLESARQGRTAELPRK LAV GKGGAIP
Sbjct:    1 MRLSEFLSVLNLAAVAQGGHGTAGWGSKSAAVVSDRRVFNDRHRQPQSRSAVAFFGRRPRTSTPRVTGSSEAGSAVDALPDASGAGANGVRGSPAAADTSSXXXXXDSAAAPRVSAAQGIVNTFRDFWGHARDGTFALWGNFK----TSQDIRKRVKAGHVMTYAEHAHLERGATDRRKLLQYLIAYAVSPQNFVYVVWYVPGLLPSTFVKPHTIRSKYHRLALERASATWDAVTGLEFRLLKAEEGFKGKPREEGSRQSKKMEKLERQREMVLDVLEADSKRQVFERFQEHMVVSAPASPDPENTAASNNKGTTKSKKPKPQKLKLPPASKGVPNAYIKTLGKGTGLSGWWHVSPGFYVRYCLSERLRDLGKMDDVLRTVSLESLSDSDLREACDARAINVGNRLGGDREPQDLRKSLGEWLDLTSPEVAAGSKLGPDTVFLPDRARLLGLGLNCLESARQGRTAELPRKALAV-GKGGAIP 478
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8913.17101.1 vs.
Match: LETM1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L818_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 8.350e-58
Identity = 95/108 (87.96%), Postives = 102/108 (94.44%), Query Frame = 0 
Query:  334 VPNAYIKALGKGTGLSGWWHVSPGFYVRYCLSERLRDLGRMDDVLRTVSLESLSDSDLREACDARAINVGNRLVGDREPQDLRKSLGEWLDLTSPEVAAGSKLGPDTV 441
            VPNAYI+ALGKGTGLSGW H+SPGFYVRYCLSERLRDLGRM ++LRTVSLESLSDSDLREACDARAINVGNRL GDREPQDLRK LG WLDLTSPEV+AGSKL PD++
Sbjct:   63 VPNAYIEALGKGTGLSGWCHISPGFYVRYCLSERLRDLGRMIEILRTVSLESLSDSDLREACDARAINVGNRLGGDREPQDLRKPLGGWLDLTSPEVSAGSKLDPDSL 170
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8913.17101.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Letm10.000e+095.03RBD domain-containing protein n=2 Tax=Ectocarpus T... [more]
LETM18.350e-5887.96domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011685LETM1-likePFAMPF07766LETM1coord: 339..429
e-value: 2.4E-10
score: 40.2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..483
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.52
IPR033122Letm1 ribosome-binding domainPROSITEPS51758LETM1_RBDcoord: 253..483
score: 9.411

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8913contigEcto-sp9_F_contig8913:475..4681 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8913.17101.1mRNA_Ecto-sp9_F_contig8913.17101.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig8913 394..4993 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig8913.17101.1 ID=prot_Ecto-sp9_F_contig8913.17101.1|Name=mRNA_Ecto-sp9_F_contig8913.17101.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=484bp
MRLSEFLSVLNLAAVAQGGHGTAGWGSKSAAVMSDRRVFNDRHRQHQSRS
AVAFFGRRPRTTTPRVTGSSKAESAVDALPDASGAGANGVRGLPAAADTS
SADAAGDSAAAPRVSAAQGIVNTFRDFWGHARDGTFALWGNFKARRHTSQ
DIRKRVKAGHVMTYAEHAHLERGAIDRRKLLQYLIAYAVSPQNFVYVVWY
VPGLLPSTFVKPHTVRSKYHRLALERASATWDAVTGLEFRLLKAEEGFKG
KPREEGSRQSKKMEKLERQREMVLDVLEADSKRQVFERFQEHMVVPAPAS
PDSENTAASNNKGTTKSKKPKPQKLKLPPASKGVPNAYIKALGKGTGLSG
WWHVSPGFYVRYCLSERLRDLGRMDDVLRTVSLESLSDSDLREACDARAI
NVGNRLVGDREPQDLRKSLGEWLDLTSPEVAAGSKLGPDTVFLPDRARLL
GLGLNCLESARQGRTAELPRKTLAVVGKGGAIP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011685LETM1
IPR033122LETM1_RBD