mRNA_Ecto-sp9_F_contig10134.171.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10134.171.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLB5_9PHAE) HSP 1 Score: 331 bits (848), Expect = 1.160e-100 Identity = 226/324 (69.75%), Postives = 231/324 (71.30%), Query Frame = 1
Query: 418 MPQWNANGLAETVLGRRGSRGLQSRVGRTVGTDAGGDDNRVEQGAAEGEPANLEHVRQGLLTLHTLLSGTASSRRRQVLDSSSDGVGAHAAEHASVMERAAGGDDHAEEDEDLGLAAPAXXXXXXXXXXXA-----RRAGVAPVAEAILSPAAATGDAVDSEQETAEAEASTREAEEVGAAAGVVESQPEAEQQDEEAAVEAVSSDVPILDEGGDSGSATRGVRLPAASLDDGPEEGDGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASREPGGGSPSLTWPLLGPDEAAEAAESTFGSRSRSESEVSEGPPRLQSDSED 1374
MPQWNANGLAETV GRRGSRGLQSRVGR GT AGGDDNRVEQGAAEGEPA+LEHVRQGLLTLHTLLSGTASSR DLGLAAPA XX RRAGVAP AEAILSP AATGDA+DS+QETAEAEASTREA EVGAAAGV++SQPEAEQQDEEAAVEA SSDVPILDEGGD G RG LP ASLDDG EEGD G XXXXXXXXXXXX ASREPG GSPSLTWPLLGPDE AEAAES FG RS SESEVSEGPPRLQSDSED
Sbjct: 1 MPQWNANGLAETVFGRRGSRGLQSRVGRPAGTGAGGDDNRVEQGAAEGEPASLEHVRQGLLTLHTLLSGTASSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLGLAAPAVPAAAPAXXPGVAVAAVRRAGVAPAAEAILSPPAATGDALDSDQETAEAEASTREAGEVGAAAGVLKSQPEAEQQDEEAAVEASSSDVPILDEGGDRGPPARGGALPKASLDDGSEEGDRGREEEGGGGKGDKAKXXXXXXXXXXXXRGASSASREPGRGSPSLTWPLLGPDEGAEAAESRFGLRSGSESEVSEGPPRLQSDSED 324
BLAST of mRNA_Ecto-sp9_F_contig10134.171.1 vs.
Match: Ubiquitin-like (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPD8_ECTSI) HSP 1 Score: 121 bits (303), Expect = 9.200e-29 Identity = 113/124 (91.13%), Postives = 114/124 (91.94%), Query Frame = 1
Query: 1 QARQRLIYRGKVLADADPLSAYKVENGHFVHMVARPEGVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSDRLLMGMGAPATTAAIPATAXXXXXXXXXXXXXXGIDNAVLNAAAGLEQGDFL 372
QARQRLIYRGKVLADADPLSAYKVENGHFVHMVARPEGVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SDRLLMGMGAPA XXXXXXXXXXXXXXGIDNA+LNAAAGLEQGDFL
Sbjct: 13 QARQRLIYRGKVLADADPLSAYKVENGHFVHMVARPEGVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSDRLLMGMGAPAXXXXXXXXXXXXXXXXXXXXXXXGIDNALLNAAAGLEQGDFL 136
BLAST of mRNA_Ecto-sp9_F_contig10134.171.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GR18_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 7.710e-8 Identity = 68/209 (32.54%), Postives = 85/209 (40.67%), Query Frame = 1
Query: 7 RQRLIYRGKVLADADPLSAYKVENGHFVHMVARPEGVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSDRLLMGMGAPATTAAIPATAXXXXXXXXXXXXXXGIDNAVLNAAAGLEQGDFLGGGRAARAAGSPPLAMPQWNANGLAETVLGRRGSRGLQSRVGRTVGTDAGGDDNRVEQG----AAEGEPANLEHVRQGLLTLHTLLS 621
RQRLIYRGKVL D D LS YK+++GH VHMVARP +P S L G T + A G+D ++ G G +GGG ANG A RR G S V + G+ GD NR G AA P NLEHVRQGLLT++++++
Sbjct: 61 RQRLIYRGKVLQDQDMLSKYKIQDGHTVHMVARPLNLPISPMSNSGMSS-------------------SSSPLGGDNLTGTAGGLSAGGLSQNLSTLTAMLGLGLDGSM-----GGTTG--IGGG----------------GANG-ASIATARRLMMGAIS-VPPSNGSIRAGDANRAAGGRTPAAAPVAPPNLEHVRQGLLTMYSMMA 225
BLAST of mRNA_Ecto-sp9_F_contig10134.171.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GNI3_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 1.000e-7 Identity = 68/209 (32.54%), Postives = 85/209 (40.67%), Query Frame = 1
Query: 7 RQRLIYRGKVLADADPLSAYKVENGHFVHMVARPEGVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSDRLLMGMGAPATTAAIPATAXXXXXXXXXXXXXXGIDNAVLNAAAGLEQGDFLGGGRAARAAGSPPLAMPQWNANGLAETVLGRRGSRGLQSRVGRTVGTDAGGDDNRVEQG----AAEGEPANLEHVRQGLLTLHTLLS 621
RQRLIYRGKVL D D LS YK+++GH VHMVARP +P S L G T + A G+D ++ G G +GGG ANG A RR G S V + G+ GD NR G AA P NLEHVRQGLLT++++++
Sbjct: 61 RQRLIYRGKVLQDQDMLSKYKIQDGHTVHMVARPLNLPISPMSNSGMSS-------------------SSSPLGGDNLTGTAGGLSAGGLSQNLSTLTAMLGLGLDGSM-----GGTTG--IGGG----------------GANG-ASIATARRLMMGAIS-VPPSNGSIRAGDANRAAGGRTPAAAPVAPPNLEHVRQGLLTMYSMMA 225
BLAST of mRNA_Ecto-sp9_F_contig10134.171.1 vs.
Match: Ubiquitin-like (domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A4N5_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 8.350e-7 Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 1
Query: 7 RQRLIYRGKVLADADPLSAYKVENGHFVHMVARPE 111
RQRLIYRGK+L D D LSAY VE+GH VHMVARPE
Sbjct: 80 RQRLIYRGKLLRDGDLLSAYNVEDGHMVHMVARPE 114
BLAST of mRNA_Ecto-sp9_F_contig10134.171.1 vs.
Match: Ubiquitin-like (domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ATW3_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 9.560e-7 Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 1
Query: 7 RQRLIYRGKVLADADPLSAYKVENGHFVHMVARPE 111
RQRLIYRGK+L D D LSAY VE+GH VHMVARPE
Sbjct: 54 RQRLIYRGKLLRDGDLLSAYNVEDGHMVHMVARPE 88
BLAST of mRNA_Ecto-sp9_F_contig10134.171.1 vs.
Match: Ubiquitin-like (domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418BFX6_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.930e-6 Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 1
Query: 7 RQRLIYRGKVLADADPLSAYKVENGHFVHMVARPE 111
RQRLIYRGK+L D D LSAY VE+GH VHMVARPE
Sbjct: 66 RQRLIYRGKLLRDGDLLSAYNVEDGHMVHMVARPE 100
BLAST of mRNA_Ecto-sp9_F_contig10134.171.1 vs.
Match: Ubiquitin-like (domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WAL1_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 2.260e-6 Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1
Query: 4 ARQRLIYRGKVLADADPLSAYKVENGHFVHMVARPEGVP 120
ARQRLIYRGK+L D D LS Y V++GH VHMVARPE +P
Sbjct: 61 ARQRLIYRGKLLRDNDILSTYNVQDGHTVHMVARPENIP 99
BLAST of mRNA_Ecto-sp9_F_contig10134.171.1 vs.
Match: Ubiquitin-like (domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FQX5_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 4.550e-6 Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 1
Query: 7 RQRLIYRGKVLADADPLSAYKVENGHFVHMVARPE 111
RQRLIYRGK+L D D LSAY VE+GH VHMVARPE
Sbjct: 66 RQRLIYRGKLLRDGDLLSAYNVEDGHMVHMVARPE 100
BLAST of mRNA_Ecto-sp9_F_contig10134.171.1 vs.
Match: Ubiquitin-like (domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AFV9_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 4.840e-6 Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 1
Query: 7 RQRLIYRGKVLADADPLSAYKVENGHFVHMVARPE 111
RQRLIYRGK+L D D LSAY VE+GH VHMVARPE
Sbjct: 66 RQRLIYRGKLLRDGDLLSAYNVEDGHMVHMVARPE 100 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10134.171.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10134.171.1 >prot_Ecto-sp9_F_contig10134.171.1 ID=prot_Ecto-sp9_F_contig10134.171.1|Name=mRNA_Ecto-sp9_F_contig10134.171.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=460bp QARQRLIYRGKVLADADPLSAYKVENGHFVHMVARPEGVPPPAGGGGGGAback to top mRNA from alignment at Ecto-sp9_F_contig10134:744..3007- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10134.171.1 ID=mRNA_Ecto-sp9_F_contig10134.171.1|Name=mRNA_Ecto-sp9_F_contig10134.171.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2264bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10134:744..3007- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10134:744..3007- >mRNA_Ecto-sp9_F_contig10134.171.1 ID=mRNA_Ecto-sp9_F_contig10134.171.1|Name=mRNA_Ecto-sp9_F_contig10134.171.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2760bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10134:744..3007- (Ectocarpus species9 EcSCA_722f female)back to top |