mRNA_Ecto-sp9_F_contig891.17097.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig891.17097.1
Unique NamemRNA_Ecto-sp9_F_contig891.17097.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig891.17097.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB76_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 9.940e-6
Identity = 25/30 (83.33%), Postives = 25/30 (83.33%), Query Frame = -1 
Query:  883 MAFNPSGPANCTQPYCLFIHRVGGFFKNPG 972
            MAFNPSGPA CTQPY  FIHR GGF KNPG
Sbjct:    1 MAFNPSGPAICTQPYRPFIHRGGGFSKNPG 30
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig891.17097.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized9.940e-683.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig891contigEcto-sp9_F_contig891:476..3149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-01_012280.1
Exons3
Model size1515
Cds size1515
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig891.17097.1prot_Ecto-sp9_F_contig891.17097.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig891 476..3149 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930948.232786-CDS-Ecto-sp9_F_contig891:475..7301622930948.232786-CDS-Ecto-sp9_F_contig891:475..730Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig891 476..730 +
1692278962.566748-CDS-Ecto-sp9_F_contig891:475..7301692278962.566748-CDS-Ecto-sp9_F_contig891:475..730Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig891 476..730 +
1622930948.2511232-CDS-Ecto-sp9_F_contig891:1508..17611622930948.2511232-CDS-Ecto-sp9_F_contig891:1508..1761Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig891 1509..1761 +
1692278962.5804083-CDS-Ecto-sp9_F_contig891:1508..17611692278962.5804083-CDS-Ecto-sp9_F_contig891:1508..1761Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig891 1509..1761 +
1622930948.2679095-CDS-Ecto-sp9_F_contig891:2142..31491622930948.2679095-CDS-Ecto-sp9_F_contig891:2142..3149Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig891 2143..3149 +
1692278962.6062362-CDS-Ecto-sp9_F_contig891:2142..31491692278962.6062362-CDS-Ecto-sp9_F_contig891:2142..3149Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig891 2143..3149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig891.17097.1

>prot_Ecto-sp9_F_contig891.17097.1 ID=prot_Ecto-sp9_F_contig891.17097.1|Name=mRNA_Ecto-sp9_F_contig891.17097.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=505bp
QKAKASSKKAKCVTGPAGMSLAEPVHEMIERGAPLTKTDRSGLTVMDAAA
ACDAELLRYMLLECRLQPTDALSYAIKHGDSSTAKELLDGGGVDPCTIID
HSGNSLLHVAAAHGHIACVEVLLTGAWLQREDSVPLNVDARNTAGRTALF
NAAMNAFVDVTAFLLDVGASPAIQDGSGLGVGYAFEDVVSDDQKKAICEL
LQQWDCWGGEERERAESSMSAKAPGGEVVLLSGEVPFVHNFRTKHLRDDS
NILPPRDRTTSRKAVHRTGTGRHESLLNPWRGATVEADSSFQRTTRVLEE
SANPMNEEAVGLRAVSRTGGVERHQSQEGGAKDVEDCFARERRGSSLTFE
DEKQELSERDSRLASATGMSTKPAIQKSNPSGKGKARRRGSSSRRRRGHS
DGSSGAQDQSEGRSRVESTATENSAEFATNGSKITRPRENASVSEPPPNQ
HRKLRPRAMDQQDNSPKIEAAAASKSGSAASAPLTATPSVPQQRMPSRVL
KTFW*
back to top

mRNA from alignment at Ecto-sp9_F_contig891:476..3149+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig891.17097.1 ID=mRNA_Ecto-sp9_F_contig891.17097.1|Name=mRNA_Ecto-sp9_F_contig891.17097.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2674bp|location=Sequence derived from alignment at Ecto-sp9_F_contig891:476..3149+ (Ectocarpus species9 EcSCA_722f female)
CAGAAGGCCAAGGCCAGCTCGAAGAAAGCAAAATGCGTCACCGGTCCAGC
GGGAATGTCGCTTGCGGAACCCGTGCATGAGATGATTGAAAGGGGGGCGC
CGCTGACAAAAACCGACCGGTCCGGGCTGACGGTCATGGATGCGGCAGCA
GCGTGTGATGCAGAGCTGCTGCGCTACATGCTGCTAGAGTGTAGACTCCA
GCCAACCGATGCTCTTTCGTACGCGATAAAGCACGGCGACTCGTCGACTG
CCAAGGTGGGCCAGGAGGGTTTTGACAAGATAAAAGAAAAATATGCATAT
AAATGGTGGGTTGTATATGGTGACTTATCGTAAGAACTTTCGTGTCTCCG
CACTTTCGCAATGACGCACGAAATTCCAAACACCAGAGTGAATGAATCCC
TTGTGGCCCGTAGACATGTAAGAGACATCCGTGCGTTCCGCCACAGTTGA
AAGCGTTTGTCGCCTCCTCCTCCTCCTCCTCCTCCTCCTGTTCCTGCTCT
CAATACGGCCGGAACAATACTCGGATAAACTCTCATCGCCACCTTGAGCA
CCCGTCTTTGTTTCCGGGCAAACAAGTCGAGTCGATGTTGGTGCTGTGCT
ATGTACAATGTTCAAAGGGCATCTCGACACCGCAACAACGTGACGTTGAC
CTTCGTGTCTCGATCCTATGATTCTTAGCCTTTTGTTGCGATCAAGTTCT
CTGCAGTAGTCGATCGGCTTGGGGGTCCCCTGCGTGCGCATTGGTGGGGA
GCAAAGAGTCGTTGTTACATTCAACGCACAGGGCTGGTAAATGGGCCCTA
CTAACACCAATTCTCATGACGTGCCGACAGCGTCTGTTTGGCAATGATAC
TACGACGCTTTGAGGTTCATCAATTGGTATGTTGCCGTACCCTACGGATT
TCTGTAGAATCTTCCACGTCGTTGCGGATAGCAATCCAAGGGCTCTTCAT
CCCTCCAGGCTGTTACGCGCAGCAAGTCACAATTTACAACCAACCCTTCC
TTGTGGATTCCGGAAAACATGTGCTCACTCCAGGAACTACTTGATGGCGG
GGGAGTGGACCCCTGTACCATAATCGACCACAGCGGCAACTCCTTGCTGC
ATGTTGCCGCAGCACACGGTCACATAGCGTGCGTCGAGGTGCTGCTAACG
GGAGCGTGGCTGCAACGAGAAGACTCTGTGCCCTTGAATGTAGATGCAAG
AAACACCGCAGGACGTACAGCTCTGTTTAACGCGGCCATGAACGCATTTG
TCGATGTCACCGCCTTCCTCTTGGACGTTGGTGCATGTGAGTTGGTGAAA
CACCTTTTGTGCCTCGTTGGTCCGCCTTGTCGCGCAAGTACCGAGACACC
TCCTGAGTTTGCTGCGAATGAGTGTTTGGTTTGCTCCAGCCTCGAACGAC
AATTTCCTTCAACGACAACTACGCGGGTTCGGTCGAGCGTTCTGGTATCG
TGTTCCATGCGTAAGAGTTCATAGCTCCGCCACCGCCCGAAGTAACCCTT
GGTCAGCTATGCACATAGGCATTACCAGCAGTGTGCCGTCTTTCAAACAG
TGCGCCCAACTTAGTTCGATTTTCGATCTTGGCACAACCACCGTACAGTC
AACAACCTTGCCGTTGCATACGCATATCGACAACAAACGCCTTATACCCA
CTTACATCGTATGACAGCTCCTGCAATTCAAGATGGGTCAGGCTTGGGGG
TAGGTTATGCGTTTGAGGACGTCGTTTCGGACGACCAAAAGAAGGCGATT
TGCGAGCTCCTGCAACAGTGGGACTGCTGGGGTGGAGAGGAGCGTGAGCG
CGCTGAGAGCTCAATGTCCGCCAAAGCACCCGGCGGTGAGGTTGTGCTCT
TGTCTGGCGAAGTACCGTTTGTGCACAACTTCAGGACGAAACACCTGCGG
GATGATAGCAATATCCTCCCACCCCGGGATAGGACTACGTCCAGGAAAGC
AGTGCATCGGACAGGGACAGGGCGACACGAGAGCTTGCTGAATCCCTGGC
GGGGTGCGACCGTAGAAGCTGACAGCAGTTTCCAACGTACGACCAGGGTT
CTTGAAGAATCCGCCAACCCGATGAATGAAGAGGCAGTAGGGTTGCGTGC
AGTTAGCAGGACCGGAGGGGTTGAACGCCATCAGTCACAAGAGGGAGGGG
CGAAGGACGTCGAAGACTGCTTCGCGCGAGAGCGTCGAGGAAGTAGCTTA
ACTTTCGAGGATGAGAAACAGGAGTTGTCGGAACGAGATTCAAGGCTCGC
CTCGGCAACAGGGATGTCCACCAAACCAGCGATTCAGAAGTCCAATCCGA
GCGGGAAGGGCAAGGCGCGAAGGCGCGGTAGCTCGAGTCGTCGCCGAAGA
GGTCACAGCGATGGTTCCAGCGGTGCACAAGACCAATCGGAAGGACGATC
CAGGGTCGAGTCGACAGCAACAGAAAATTCGGCCGAGTTCGCTACCAACG
GTTCGAAAATCACCAGGCCACGAGAAAACGCCTCCGTCTCTGAGCCACCT
CCAAATCAACATCGCAAGCTAAGACCCCGTGCGATGGACCAGCAAGACAA
CTCGCCAAAGATAGAAGCGGCGGCAGCTTCAAAATCGGGCAGTGCAGCGT
CCGCTCCTTTGACCGCGACCCCATCAGTGCCACAACAGAGGATGCCAAGC
AGGGTATTGAAGACGTTTTGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig891:476..3149+

>mRNA_Ecto-sp9_F_contig891.17097.1 ID=mRNA_Ecto-sp9_F_contig891.17097.1|Name=mRNA_Ecto-sp9_F_contig891.17097.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3030bp|location=Sequence derived from alignment at Ecto-sp9_F_contig891:476..3149+ (Ectocarpus species9 EcSCA_722f female)
CAGAAGGCCAAGGCCAGCTCGAAGAAAGCAAAATGCGTCACCGGTCCAGC
GGGAATGTCGCTTGCGGAACCCGTGCATGAGATGATTGAAAGGGGGGCGC
CGCTGACAAAAACCGACCGGTCCGGGCTGACGGTCATGGATGCGGCAGCA
GCGTGTGATGCAGAGCTGCTGCGCTACATGCTGCTAGAGTGTAGACTCCA
GCCAACCGATGCTCTTTCGTACGCGATAAAGCACGGCGACTCGTCGACTG
CCAAGCAGAAGGCCAAGGCCAGCTCGAAGAAAGCAAAATGCGTCACCGGT
CCAGCGGGAATGTCGCTTGCGGAACCCGTGCATGAGATGATTGAAAGGGG
GGCGCCGCTGACAAAAACCGACCGGTCCGGGCTGACGGTCATGGATGCGG
CAGCAGCGTGTGATGCAGAGCTGCTGCGCTACATGCTGCTAGAGTGTAGA
CTCCAGCCAACCGATGCTCTTTCGTACGCGATAAAGCACGGCGACTCGTC
GACTGCCAAGGAACTACTTGATGGCGGGGGAGTGGACCCCTGTACCATAA
TCGACCACAGCGGCAACTCCTTGCTGCATGTTGCCGCAGCACACGGTCAC
ATAGCGTGCGTCGAGGTGCTGCTAACGGGAGCGTGGCTGCAACGAGAAGA
CTCTGTGCCCTTGAATGTAGATGCAAGAAACACCGCAGGACGTACAGCTC
TGTTTAACGCGGCCATGAACGCATTTGTCGATGTCACCGCCTTCCTCTTG
GACGTTGGTGCATGAACTACTTGATGGCGGGGGAGTGGACCCCTGTACCA
TAATCGACCACAGCGGCAACTCCTTGCTGCATGTTGCCGCAGCACACGGT
CACATAGCGTGCGTCGAGGTGCTGCTAACGGGAGCGTGGCTGCAACGAGA
AGACTCTGTGCCCTTGAATGTAGATGCAAGAAACACCGCAGGACGTACAG
CTCTGTTTAACGCGGCCATGAACGCATTTGTCGATGTCACCGCCTTCCTC
TTGGACGTTGGTGCATCTCCTGCAATTCAAGATGGGTCAGGCTTGGGGGT
AGGTTATGCGTTTGAGGACGTCGTTTCGGACGACCAAAAGAAGGCGATTT
GCGAGCTCCTGCAACAGTGGGACTGCTGGGGTGGAGAGGAGCGTGAGCGC
GCTGAGAGCTCAATGTCCGCCAAAGCACCCGGCGGTGAGGTTGTGCTCTT
GTCTGGCGAAGTACCGTTTGTGCACAACTTCAGGACGAAACACCTGCGGG
ATGATAGCAATATCCTCCCACCCCGGGATAGGACTACGTCCAGGAAAGCA
GTGCATCGGACAGGGACAGGGCGACACGAGAGCTTGCTGAATCCCTGGCG
GGGTGCGACCGTAGAAGCTGACAGCAGTTTCCAACGTACGACCAGGGTTC
TTGAAGAATCCGCCAACCCGATGAATGAAGAGGCAGTAGGGTTGCGTGCA
GTTAGCAGGACCGGAGGGGTTGAACGCCATCAGTCACAAGAGGGAGGGGC
GAAGGACGTCGAAGACTGCTTCGCGCGAGAGCGTCGAGGAAGTAGCTTAA
CTTTCGAGGATGAGAAACAGGAGTTGTCGGAACGAGATTCAAGGCTCGCC
TCGGCAACAGGGATGTCCACCAAACCAGCGATTCAGAAGTCCAATCCGAG
CGGGAAGGGCAAGGCGCGAAGGCGCGGTAGCTCGAGTCGTCGCCGAAGAG
GTCACAGCGATGGTTCCAGCGGTGCACAAGACCAATCGGAAGGACGATCC
AGGGTCGAGTCGACAGCAACAGAAAATTCGGCCGAGTTCGCTACCAACGG
TTCGAAAATCACCAGGCCACGAGAAAACGCCTCCGTCTCTGAGCCACCTC
CAAATCAACATCGCAAGCTAAGACCCCGTGCGATGGACCAGCAAGACAAC
TCGCCAAAGATAGAAGCGGCGGCAGCTTCAAAATCGGGCAGTGCAGCGTC
CGCTCCTTTGACCGCGACCCCATCAGTGCCACAACAGAGGATGCCAAGCA
GGGTATTGAAGACGTTTTGGTGACTCCTGCAATTCAAGATGGGTCAGGCT
TGGGGGTAGGTTATGCGTTTGAGGACGTCGTTTCGGACGACCAAAAGAAG
GCGATTTGCGAGCTCCTGCAACAGTGGGACTGCTGGGGTGGAGAGGAGCG
TGAGCGCGCTGAGAGCTCAATGTCCGCCAAAGCACCCGGCGGTGAGGTTG
TGCTCTTGTCTGGCGAAGTACCGTTTGTGCACAACTTCAGGACGAAACAC
CTGCGGGATGATAGCAATATCCTCCCACCCCGGGATAGGACTACGTCCAG
GAAAGCAGTGCATCGGACAGGGACAGGGCGACACGAGAGCTTGCTGAATC
CCTGGCGGGGTGCGACCGTAGAAGCTGACAGCAGTTTCCAACGTACGACC
AGGGTTCTTGAAGAATCCGCCAACCCGATGAATGAAGAGGCAGTAGGGTT
GCGTGCAGTTAGCAGGACCGGAGGGGTTGAACGCCATCAGTCACAAGAGG
GAGGGGCGAAGGACGTCGAAGACTGCTTCGCGCGAGAGCGTCGAGGAAGT
AGCTTAACTTTCGAGGATGAGAAACAGGAGTTGTCGGAACGAGATTCAAG
GCTCGCCTCGGCAACAGGGATGTCCACCAAACCAGCGATTCAGAAGTCCA
ATCCGAGCGGGAAGGGCAAGGCGCGAAGGCGCGGTAGCTCGAGTCGTCGC
CGAAGAGGTCACAGCGATGGTTCCAGCGGTGCACAAGACCAATCGGAAGG
ACGATCCAGGGTCGAGTCGACAGCAACAGAAAATTCGGCCGAGTTCGCTA
CCAACGGTTCGAAAATCACCAGGCCACGAGAAAACGCCTCCGTCTCTGAG
CCACCTCCAAATCAACATCGCAAGCTAAGACCCCGTGCGATGGACCAGCA
AGACAACTCGCCAAAGATAGAAGCGGCGGCAGCTTCAAAATCGGGCAGTG
CAGCGTCCGCTCCTTTGACCGCGACCCCATCAGTGCCACAACAGAGGATG
CCAAGCAGGGTATTGAAGACGTTTTGGTGA
back to top