mRNA_Ecto-sp9_F_contig8903.17090.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8903.17090.1
Unique NamemRNA_Ecto-sp9_F_contig8903.17090.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig8903.17090.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY73_9PHAE)

HSP 1 Score: 1101 bits (2847), Expect = 0.000e+0
Identity = 629/708 (88.84%), Postives = 641/708 (90.54%), Query Frame = 1
Query:    1 MRAPTAAAMPLVVLPLMLPMTQGVALSRMFATRQASLDQSGPAGMIRGVPSAAGLEPGKREGGKISRRNTESSGPLALLDVCYMADDCTPGLYVEAGFRTQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCDVSHTRCDDAIVPAHPTDEEHSHEDXXXXXXXXXXXXXXXXXXXXXTSDTPRDSSGDIMADQQDGEGGQLYDDGETSYGEYDXXXXXXXXXXDTITGSGLDRYWDGYSGRYRFGQYDYTTSSEATPRAQDNPLAEDSGTRPYEDRVGSPDNNHDDEKGTKFPXXXXXXSGASPKDDVVHEGGEGEESTAGPLSTSSTEESFTTICQPDYASGTIKTMASSEARVEAVAMDSQGNVFYSVSKGRSAGDAILRAASSSPXXXXXXXXXXXXXXXXXXXXXGTGIILAMAIDADDNLIFTMEDAPAVSGGVFLLSRRQINPGGGVGAEDSSGTGVSRYDSFFEMPSETETAETSAVSLAAGLGPFLPGVAVCPVTGDVYVTRGHTGIARLVKGTDGSFGQKMEWNMVDMAFKDGVKTRAPLMVWDIAVNSIGIVYFTTYVQQGVVLKGIFPRQGGAAQVRLVGGKWDSGVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASDAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVTPISLCP 2124
            MRA TAAA PLVVLPLMLPMT GVALSRMFATRQASLDQSGPA MIRGVPSAAGLE GKR+G KISRRNTES GPLALLDVCYM DDCTPGLYVEAGFRTQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCDVSHTRCDDAIVPAHPTDEEHSHEDXXXXXXXXXXXXXX       +SDTPRDSSGDI+ DQ+D EGGQLYDDGE+SYGE  XXXXXXXXXX +ITG GLDRYW GY GRY FGQYDYTTSSEATPR QDNP AEDSGTRP ED  GSPD+N DDEKGT+FP      SGASPKDD VHEGGEGEESTA PLSTSSTEES TTICQPDYASGTI+TMASSE RVEAVAMDSQGNVFYSVSKG+  GDAIL AASSSPXXXXXXXXXXXXXXXX     GTGIILAMAIDADDNLIFTMEDAPAVSGGVFLLS RQINPGGGVGAEDSS TGVSRYDS+FEMPSET TAETSAVSLAAGLGPFLPGVAVCPVTGDVYVTRGHTGIARLVKGTDGSF QKMEWNMVDMAFKDGVKTRAPLMVWDIAVNSIGIVYFTTYVQ GVVLKGIFPRQGG AQVRL+GGKWDSGVS SSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTA        S AGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVTP   CP
Sbjct:    1 MRALTAAATPLVVLPLMLPMTHGVALSRMFATRQASLDQSGPARMIRGVPSAAGLEAGKRDGRKISRRNTESFGPLALLDVCYMTDDCTPGLYVEAGFRTQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCDVSHTRCDDAIVPAHPTDEEHSHEDXXXXXXXXXXXXXX-------SSDTPRDSSGDILTDQRDAEGGQLYDDGESSYGEXXXXXXXXXXXXXSITGPGLDRYWGGYFGRYSFGQYDYTTSSEATPRTQDNPSAEDSGTRPSEDPAGSPDSNQDDEKGTEFPPRHDETSGASPKDDGVHEGGEGEESTAAPLSTSSTEESSTTICQPDYASGTIETMASSETRVEAVAMDSQGNVFYSVSKGQGPGDAILWAASSSPXXXXXXXXXXXXXXXXTVVYVGTGIILAMAIDADDNLIFTMEDAPAVSGGVFLLSWRQINPGGGVGAEDSSDTGVSRYDSYFEMPSETGTAETSAVSLAAGLGPFLPGVAVCPVTGDVYVTRGHTGIARLVKGTDGSFSQKMEWNMVDMAFKDGVKTRAPLMVWDIAVNSIGIVYFTTYVQ-GVVLKGIFPRQGGVAQVRLLGGKWDSGVSRSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTA--------SKAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVTPTWPCP 692          
BLAST of mRNA_Ecto-sp9_F_contig8903.17090.1 vs.
Match: NHL (repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV4_ECTSI)

HSP 1 Score: 1036 bits (2680), Expect = 0.000e+0
Identity = 578/715 (80.84%), Postives = 584/715 (81.68%), Query Frame = 1
Query:    1 MRAPTAAAMPLVVLPLMLPMTQGVALSRMFATRQASLDQSGPAGMIRGVPSAAGLEPGKREGGKISRRNTESSGPLALLDVCYMADDCTPGLYVEAGFRTQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCDVSHTRCDDAIVPAHPTDEEHSHEDXXXXXXXXXXXXXXXXXXXXX-------TSDTPRDSSGDIMADQQDGEGGQLYDDGETSYGEYDXXXXXXXXXXDTITGSGLDRYWDGYSGRYRFGQYDYTTSSEATPRAQDNPLAEDSGTRPYEDRVGSPDNNHDDEKGTKFPXXXXXXSGASPKDDVVHEGGEGEESTAGPLSTSSTEESFTTICQPDYASGTIKTMASSEARVEAVAMDSQGNVFYSVSKGRSAGDAILRAASSSPXXXXXXXXXXXXXXXXXXXXXGTGIILAMAIDADDNLIFTMEDAPAVSGGVFLLSRRQINPGGGVGAEDSSGTGVSRYDSFFEMPSETETAETSAVSLAAGLGPFLPGVAVCPVTGDVYVTRGHTGIARLVKGTDGSFGQKMEWNMVDMAFKDGVKTRAPLMVWDIAVNSIGIVYFTTYVQQGVVLKGIFPRQGGAAQVRLVGGKWDSGVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASDAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVTPISLCP 2124
            MRAPTAAA PLVVLPLMLPMT GVALSRMFATRQASLDQSGPAGMIRGVP AA LE GKREGGKISRRNTES GPLALLDVCYM DDCTPGLYVEAGFRTQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCD SH RCDDA+VPAHPTDEEHSHED  XXXXXXXXXXXXXXXXXXX       TSDTP+DSSGDIMADQQDGEGGQLYDDGETSYGEYD          D ITGSGLDRYWDGYSGRY FGQYDYTTSSE TPRAQDNPLAEDSGTR YEDRVGSPDNNHDDEKGT+FP      SGASPK D  HEGGEGEEST GPLSTSSTEES TTICQPDYA+GTI+TMASSE RVEAVAMDSQ                                                                                   INPGGGVGAEDSSGTGVS YDSFFEM SETETAETSAVSLAAGLGPFLPGVAVCPVTGDVYVTRGHTGIARLVKGTDGSFGQKMEWNMVDMAFKDGVKTRAPLMVWDIAVNSIGIVYFTTYVQ GVVLKGIFPRQGGAAQVRLVGGKWDSGVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPAS+AGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVTP SLCP
Sbjct:    1 MRAPTAAATPLVVLPLMLPMTHGVALSRMFATRQASLDQSGPAGMIRGVPRAARLEAGKREGGKISRRNTESFGPLALLDVCYMTDDCTPGLYVEAGFRTQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCDASHARCDDAVVPAHPTDEEHSHEDDFXXXXXXXXXXXXXXXXXXXXXXXXXXTSDTPKDSSGDIMADQQDGEGGQLYDDGETSYGEYDDVQYRHDKYDDRITGSGLDRYWDGYSGRYSFGQYDYTTSSEDTPRAQDNPLAEDSGTRLYEDRVGSPDNNHDDEKGTEFPPPHDETSGASPKADGAHEGGEGEESTTGPLSTSSTEESSTTICQPDYAAGTIETMASSETRVEAVAMDSQ-----------------------------------------------------------------------------------INPGGGVGAEDSSGTGVSMYDSFFEMTSETETAETSAVSLAAGLGPFLPGVAVCPVTGDVYVTRGHTGIARLVKGTDGSFGQKMEWNMVDMAFKDGVKTRAPLMVWDIAVNSIGIVYFTTYVQ-GVVLKGIFPRQGGAAQVRLVGGKWDSGVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASEAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVTPTSLCP 631          
BLAST of mRNA_Ecto-sp9_F_contig8903.17090.1 vs.
Match: Putative (NHL repeat containing protein n=1 Tax=Candidatus Sulfopaludibacter sp. SbA3 TaxID=2043164 RepID=A0A2N9M690_9BACT)

HSP 1 Score: 94.4 bits (233), Expect = 3.880e-16
Identity = 48/103 (46.60%), Postives = 67/103 (65.05%), Query Frame = 1
Query: 1795 GVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASDAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVV 2103
            G SG+ GDGG A SA L +P G+ VD+  N+Y+AE +G ++R +S++GII+T  GTG   + GDGGPAS A L+LP A+   PS     + IAD  +  +R V
Sbjct:  243 GPSGNPGDGGPATSASLIFPAGVVVDSAGNLYIAESEGNRVRKVSSTGIITTVAGTGMEKFSGDGGPASSATLNLPVALVLDPS---GNLYIADQNNRRIRRV 342          
BLAST of mRNA_Ecto-sp9_F_contig8903.17090.1 vs.
Match: NHL (repeat-containing protein n=1 Tax=Spirosoma luteum TaxID=431553 RepID=UPI001FE0E2EF)

HSP 1 Score: 90.5 bits (223), Expect = 6.860e-16
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 1
Query: 1792 SGVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASDAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVTP 2109
            +G+SG SGDGG A SA L  P  +A DA  N+Y+A+    ++R ++TSGIIST  G G   + GDGG A+ AGL  P  +A+  S     + IAD  +N +R V+P
Sbjct:   78 TGISGFSGDGGAATSASLYGPADMAYDASGNLYIADIGNRRVRKVNTSGIISTVAGNGFVGFSGDGGAATAAGLYFPTGVAYDAS---GNLYIADANNNRIRKVSP 180          
BLAST of mRNA_Ecto-sp9_F_contig8903.17090.1 vs.
Match: Uncharacterized (protein n=1 Tax=Candidatus Sericytochromatia bacterium TaxID=2762020 RepID=UPI0019AF19FD)

HSP 1 Score: 91.3 bits (225), Expect = 1.210e-15
Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 1
Query: 1795 GVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASDAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVTP 2109
            G +GS+GDG  A +A L YP  +A DA  N+Y+A++   +IR ++T GIIST  GTG   + GDG  A+ A L+ P ++ F  +     + IADFG+N +R+VTP
Sbjct:  264 GTAGSTGDGSAATAAQLNYPAALAFDAVGNLYIADYNNHRIRKVTTGGIISTIAGTGIAGFNGDGVAAAAAQLNNPYSLTFDAA---GNLYIADFGNNRIRMVTP 365          
BLAST of mRNA_Ecto-sp9_F_contig8903.17090.1 vs.
Match: Uncharacterized (protein n=2 Tax=Larkinella rosea TaxID=2025312 RepID=A0A3P1BUU1_9BACT)

HSP 1 Score: 91.7 bits (226), Expect = 2.710e-15
Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 1
Query: 1792 SGVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASDAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVTP 2109
            +G  G  GDGG A SA L  P  + VDA  N+Y+A++   +IR +S  GII+T  G G  A+ GDGGPA+ A L  PN +    +     + IAD G+N +R VTP
Sbjct:  304 NGTGGYGGDGGPATSAKLWLPNDVTVDAQGNLYIADYDNNRIRKVSPDGIITTVAGNGEAAFGGDGGPATSASLHRPNGVCVDAA---GNLYIADAGNNRIRKVTP 406          
BLAST of mRNA_Ecto-sp9_F_contig8903.17090.1 vs.
Match: NHL (repeat-containing protein n=1 Tax=Bryobacter aggregatus TaxID=360054 RepID=UPI000AE92121)

HSP 1 Score: 90.5 bits (223), Expect = 4.090e-15
Identity = 56/151 (37.09%), Postives = 82/151 (54.30%), Query Frame = 1
Query: 1654 MVWDIAVNSIGIVYFTTYVQQGVVLKGIFPRQGGAAQVRLVGGKWDSGVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASDAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVT 2106
            +V  +A ++ G V+FT   +       +F  +     +R+ G    SGV+G SGDGG A+ A L  P GIAVDA  N+YVA++  ++IR IS +G+I+T  G G   Y GDGG A DA +  P  +          + IA+ G + +R VT
Sbjct:   41 LVQGVATDTAGNVFFTAQSR-------VFKMEPSGNLIRIAG----SGVAGFSGDGGPAVDAQLRTPYGIAVDAAGNVYVADYGNDRIRIISPAGVINTFAGNGGHFYAGDGGQAKDAQMRTPRGVTVDKD---GNVYIAETGSHVIRKVT 177          
BLAST of mRNA_Ecto-sp9_F_contig8903.17090.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pontibacter arcticus TaxID=2080288 RepID=A0A364RCT9_9BACT)

HSP 1 Score: 91.3 bits (225), Expect = 4.120e-15
Identity = 56/151 (37.09%), Postives = 84/151 (55.63%), Query Frame = 1
Query: 1660 WDIAVNSIGIVYFTTYVQ---QGVVLKGIFPRQGGAAQVRLVGGKWDSGVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASDAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVV 2103
            + +AV++ G +YF  Y     + +   GI     G            +GV+GS+GDGG+A++A ++ P GI +D   NIY AE+Q  KIR ISTSGII+T  G G+  + GDGGPA+ A L  P ++A   +     + I  + +N +R V
Sbjct:   68 YGVAVDASGNIYFAEYQAHKIRKISTDGIISTIAG------------TGVNGSTGDGGQAVNAQISGPIGITLDNSGNIYFAEYQSNKIRKISTSGIITTVAGNGTAGFSGDGGPATSASLYYPWSVAVDAA---GNLLITYYQNNRIRKV 203          
BLAST of mRNA_Ecto-sp9_F_contig8903.17090.1 vs.
Match: Uncharacterized (protein n=1 Tax=Taibaiella sp. TaxID=1869185 RepID=UPI0019BC5C3C)

HSP 1 Score: 87.4 bits (215), Expect = 8.910e-15
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 1
Query: 1744 RQGGAAQVRLVGGKWDSGVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASDAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVV 2103
            R   A  +R + G   +GVSG SGDGG A+ A      G+ +DA  NIY+A+   ++IR I+T+GI++T  GTG++   GDGGPAS+A L+LP  +A   +     + IAD+G+  +R +
Sbjct:   78 RVNAAGIIRTIAG---TGVSGFSGDGGPAIVAKFDQTAGLTLDAVGNIYIADQANQRIRKINTAGIVTTIAGTGASGGSGDGGPASNAQLNLPEDVAVDAA---GNIYIADYGNAKIRKI 191          
BLAST of mRNA_Ecto-sp9_F_contig8903.17090.1 vs.
Match: Ricin (B-type lectin domain-containing protein n=2 Tax=Streptomyces spongiicola TaxID=1690221 RepID=A0A2S1Z8N4_9ACTN)

HSP 1 Score: 88.6 bits (218), Expect = 1.040e-14
Identity = 46/105 (43.81%), Postives = 66/105 (62.86%), Query Frame = 1
Query: 1792 SGVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASDAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVT 2106
            +GV+G  GDGG A SA L YP+G+AVD  D +Y+A+    ++R I+  G IST  GTG+  + GDGGPA+ A L  P ++A   +     + IAD G++ +R VT
Sbjct:   79 TGVAGFGGDGGPAASAQLNYPRGLAVDGADAVYIADGNNHRVRKITPDGTISTVAGTGAAGFGGDGGPATSARLHTPLSVAVDGT---GDLYIADHGNHRIRKVT 180          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8903.17090.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized0.000e+088.84protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
NHL0.000e+080.84repeat-containing protein n=1 Tax=Ectocarpus silic... [more]
Putative3.880e-1646.60NHL repeat containing protein n=1 Tax=Candidatus S... [more]
NHL6.860e-1644.34repeat-containing protein n=1 Tax=Spirosoma luteum... [more]
Uncharacterized1.210e-1543.81protein n=1 Tax=Candidatus Sericytochromatia bacte... [more]
Uncharacterized2.710e-1543.40protein n=2 Tax=Larkinella rosea TaxID=2025312 Rep... [more]
NHL4.090e-1537.09repeat-containing protein n=1 Tax=Bryobacter aggre... [more]
Uncharacterized4.120e-1537.09protein n=1 Tax=Pontibacter arcticus TaxID=2080288... [more]
Uncharacterized8.910e-1540.83protein n=1 Tax=Taibaiella sp. TaxID=1869185 RepID... [more]
Ricin1.040e-1443.81B-type lectin domain-containing protein n=2 Tax=St... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8903contigEcto-sp9_F_contig8903:734..5144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score98.6
Seed ortholog evalue1.2e-17
Seed eggNOG ortholog234267.Acid_1553
KEGG rclassRC00537,RC00983
KEGG koko:K01053,ko:K13735
KEGG ReactionR01519,R02933,R03751
KEGG Pathwayko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko05100,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220,map05100
KEGG ModuleM00129
EggNOG free text desc.PFAM NHL repeat containing protein
EggNOG OGs3Y3S3@57723,COG3386@1,COG3386@2
EC3.1.1.17
COG Functional cat.G
Best tax levelAcidobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionNHL repeat-containing protein
Ec32 orthologEc-07_007620.1
Exons7
Model size2127
Cds size2127
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930947.2769961-CDS-Ecto-sp9_F_contig8903:733..10151622930947.2769961-CDS-Ecto-sp9_F_contig8903:733..1015Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8903 734..1015 +
1692278962.0247815-CDS-Ecto-sp9_F_contig8903:733..10151692278962.0247815-CDS-Ecto-sp9_F_contig8903:733..1015Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8903 734..1015 +
1622930947.2962108-CDS-Ecto-sp9_F_contig8903:1569..16651622930947.2962108-CDS-Ecto-sp9_F_contig8903:1569..1665Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8903 1570..1665 +
1692278962.038808-CDS-Ecto-sp9_F_contig8903:1569..16651692278962.038808-CDS-Ecto-sp9_F_contig8903:1569..1665Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8903 1570..1665 +
1622930947.3158615-CDS-Ecto-sp9_F_contig8903:1923..26401622930947.3158615-CDS-Ecto-sp9_F_contig8903:1923..2640Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8903 1924..2640 +
1692278962.0496523-CDS-Ecto-sp9_F_contig8903:1923..26401692278962.0496523-CDS-Ecto-sp9_F_contig8903:1923..2640Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8903 1924..2640 +
1622930947.3342748-CDS-Ecto-sp9_F_contig8903:2923..34211622930947.3342748-CDS-Ecto-sp9_F_contig8903:2923..3421Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8903 2924..3421 +
1692278962.0606894-CDS-Ecto-sp9_F_contig8903:2923..34211692278962.0606894-CDS-Ecto-sp9_F_contig8903:2923..3421Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8903 2924..3421 +
1622930947.3489022-CDS-Ecto-sp9_F_contig8903:3822..39421622930947.3489022-CDS-Ecto-sp9_F_contig8903:3822..3942Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8903 3823..3942 +
1692278962.0697255-CDS-Ecto-sp9_F_contig8903:3822..39421692278962.0697255-CDS-Ecto-sp9_F_contig8903:3822..3942Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8903 3823..3942 +
1622930947.3618586-CDS-Ecto-sp9_F_contig8903:4270..45281622930947.3618586-CDS-Ecto-sp9_F_contig8903:4270..4528Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8903 4271..4528 +
1692278962.081702-CDS-Ecto-sp9_F_contig8903:4270..45281692278962.081702-CDS-Ecto-sp9_F_contig8903:4270..4528Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8903 4271..4528 +
1622930947.37943-CDS-Ecto-sp9_F_contig8903:4988..51441622930947.37943-CDS-Ecto-sp9_F_contig8903:4988..5144Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8903 4989..5144 +
1692278962.0992987-CDS-Ecto-sp9_F_contig8903:4988..51441692278962.0992987-CDS-Ecto-sp9_F_contig8903:4988..5144Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8903 4989..5144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8903.17090.1prot_Ecto-sp9_F_contig8903.17090.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8903 734..5144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8903.17090.1

>prot_Ecto-sp9_F_contig8903.17090.1 ID=prot_Ecto-sp9_F_contig8903.17090.1|Name=mRNA_Ecto-sp9_F_contig8903.17090.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=709bp
MRAPTAAAMPLVVLPLMLPMTQGVALSRMFATRQASLDQSGPAGMIRGVP
SAAGLEPGKREGGKISRRNTESSGPLALLDVCYMADDCTPGLYVEAGFRT
QCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCDVSHTRCDDAIVPAHPT
DEEHSHEDEFYSDEIAYYSDEIAYYSDEITSDTPRDSSGDIMADQQDGEG
GQLYDDGETSYGEYDDGQYRQDKYDDTITGSGLDRYWDGYSGRYRFGQYD
YTTSSEATPRAQDNPLAEDSGTRPYEDRVGSPDNNHDDEKGTKFPPPPDE
TSGASPKDDVVHEGGEGEESTAGPLSTSSTEESFTTICQPDYASGTIKTM
ASSEARVEAVAMDSQGNVFYSVSKGRSAGDAILRAASSSPSSANTNVDTD
NDNDGDAVVYVGTGIILAMAIDADDNLIFTMEDAPAVSGGVFLLSRRQIN
PGGGVGAEDSSGTGVSRYDSFFEMPSETETAETSAVSLAAGLGPFLPGVA
VCPVTGDVYVTRGHTGIARLVKGTDGSFGQKMEWNMVDMAFKDGVKTRAP
LMVWDIAVNSIGIVYFTTYVQQGVVLKGIFPRQGGAAQVRLVGGKWDSGV
SGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIIST
CVGTGSTAYEGDGGPASDAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRV
VTPISLCP*
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mRNA from alignment at Ecto-sp9_F_contig8903:734..5144+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8903.17090.1 ID=mRNA_Ecto-sp9_F_contig8903.17090.1|Name=mRNA_Ecto-sp9_F_contig8903.17090.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4411bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8903:734..5144+ (Ectocarpus species9 EcSCA_722f female)
ATGCGGGCACCGACAGCAGCGGCCATGCCGCTGGTGGTGCTGCCGCTCAT GCTGCCCATGACGCAAGGTGTGGCTCTCTCGCGTATGTTCGCCACGAGAC AAGCCAGCCTCGACCAAAGCGGACCCGCCGGCATGATTCGCGGGGTACCG AGTGCTGCAGGGCTCGAACCTGGCAAGAGAGAGGGCGGAAAGATATCAAG GCGCAACACAGAGAGTTCCGGTCCGCTTGCCCTCTTGGACGTATGCTACA TGGCAGATGATTGCACCCCTGGGTTGTACGTGGTGAGCAAACAAACTTGC TTGTCGCGCAGTGTGGTAGTGAACCAAACGGTACGAAAGAGCAGTAATAT TTCTACCGCTACTGCTGTGGGTGCAAGGTCGAGAGTGCCAAGCGATCTTC AAGTACGTAGCGCCACTCTTGGTAGATACAATATGTCTTGTCAGGAATGG CAGCGGCCTGGTAGTCTGGGATTCTCAAAGCATCGCAACTTAAAACGCGT GACAGTGCACCGGTCGATCTACCGCTTCCATACCTCCATGCTGTCCTTTG ATATTGGCGTGCTCAGTTGCGTCCGTGTATGCTTTGTGCCAGCAACTGTT CCAGTAGATGGGGCGCTGCCCTTCACCACGGCTTCCAGGATGCTTCGTCG GCTTGCGATGCCATCCAGATCTCCTTGTCAGATTCTGCAGTGCATATTTC TCCCAAAAGAGCTTTGATCACCAGCATTAATGGCAACTGGACCTTAATTG TGATATCGCGTCGTGTTTTCTTACACACATTCGCTGCCATTTTGCTCGTG ACCCCTCCGACACACGATCGACCCCGTGGATTTCAGGAAGCCGGATTTCG GACACAATGCGAGAAAACGCCGTTTTCTGGCGGAGACACCGTTTGCTGCA AACCCTTTGCGACACCATGTGACTCGGACAAGGTAAGCTACGTTGCGTGC CCGAACGAGGCACTGAGATGCTACCGAAACAAGTCTTGTTGGGCCCAAAA GCGGCCCAAAGCCAAACGCGATGGTTCCAGTCATCATTTGAAAGAATGGC GAAAACCGGTGCCGGGGCCGCTTCACTACGTCGAAGACGAACAAGCGCAA TCGATTCGTATTTCCTCTCCTTTTGCGTTTGCGCGTCATCGGTCTCACAT TAGTTGATGCAACGCCTCATGGTATTGTCCCTTGCATCAGGCTTGCTGCT CCGGGAACTGTGATGTTAGCCATACCCGGTGCGACGACGCCATCGTTCCG GCTCACCCGACGGACGAAGAGCACTCCCACGAGGATGAATTCTACTCGGA TGAGATTGCCTACTACTCGGATGAGATTGCCTACTACTCGGATGAGATTA CATCCGACACACCGAGGGACAGCTCTGGCGACATCATGGCCGATCAGCAG GACGGTGAGGGTGGTCAACTGTACGACGATGGGGAAACTAGCTATGGCGA GTACGACGATGGCCAATATAGACAAGACAAGTACGATGACACGATCACTG GTTCCGGACTTGATCGGTATTGGGACGGATATTCTGGCCGATACAGGTTT GGCCAGTACGACTACACGACCAGCTCGGAGGCCACTCCACGCGCGCAAGA CAATCCGTTGGCGGAAGATTCAGGCACGCGTCCCTATGAAGACCGTGTTG GGTCTCCAGACAACAACCACGATGACGAAAAGGGCACCAAATTTCCACCC CCACCTGATGAAACAAGTGGAGCTTCTCCGAAAGATGACGTTGTTCATGA AGGCGGCGAGGGCGAAGAGTCCACGGCTGGCCCCCTCTCGACATCTTCGA CCGAGGAGAGTTTCACCACCATCTGTCAACCGGACTACGCCTCAGGGACA ATCAAAACGATGGCATCGTCAGAAGCAAGAGTCGAGGCGGTTGCTATGGA CTCACAGGTAACGTCGAAATGTCAAGTCATGTGCTAGGGAATACGGAAGA GGTGGAAACATGCCCCCGAGAACACTTGTTGCGTCACGATTGTCCACCGG CATAATCAAACGGCAGTCGCACGTTGTTTGCAATGCTAAATTCGGTGAGC AAGATCAATGCGAAAGGGTCTTGTCTACAGATTATGTTACACGCTACACG CTTCAAGTGGCCTCGATCGGCGCACCCGTGACATCGAGCAGCATACCCAA CTACTGCAGTTCTCGTCCTGTCCCTTGGTACCGACGACAGGGAAATGTGT TTTACTCCGTCAGCAAAGGCCGGAGTGCCGGCGATGCTATACTGAGGGCG GCGTCCTCTTCCCCCTCTAGTGCTAACACCAATGTAGACACCGACAACGA TAACGATGGTGATGCCGTCGTCTACGTCGGCACCGGCATAATCCTTGCAA TGGCCATCGATGCCGACGACAACCTCATCTTCACCATGGAAGACGCGCCC GCCGTAAGTGGGGGAGTATTCTTGCTCTCGCGGCGGCAGATCAACCCGGG CGGCGGCGTTGGGGCCGAGGATTCCAGTGGTACCGGTGTGTCTAGGTACG ATTCCTTCTTCGAAATGCCTTCGGAGACTGAGACCGCAGAGACTTCGGCA GTGAGCCTAGCCGCCGGTCTCGGTCCATTTTTGCCTGGCGTCGCCGTATG CCCCGTCACGGGAGACGTGTACGTCACAAGGGGTCATACTGGGATAGCGA GGCTGGTCAAGGGAACCGACGGGAGTTTCGGCCAAAAGGTAAGGTTTCCT TCTTCGTGCGCTGCGAAAACCGCTTGCCTTGGTAAGACAAGACCATGTCA TACTGTTTGCAAAGCACGAGCAAGGCAAGTGTCTACAACATCAACCGACG ATGAAGGCAGCGAAACAACCTGTGGCTGTCGTTGTATGTGTTTTGCTTGC CTAGGAAGTGAGGTGCGGAAGATTTTTACTGACTGAAGACGGAAAGGGAA CACGTGTATTTGTACGACAGAGATGGGGGCAATATCTGCCCTGCAGTTAG CTCTCTACCACGCTAGTTTGGTGCCGCGCGAAACGGGTGGTATATTTTTT TGGCCAACGGAAAACACCTGTCGGTTTTGTCAGTGCCCACATGACTCCGC CTTGACGTCTCTTCGTTCATACCATCCCCCACCGACAAGATGGAATGGAA TATGGTGGACATGGCCTTCAAGGACGGCGTGAAAACTCGAGCGCCGCTCA TGGTATGGGACATCGCCGTCAATAGCATCGGTATCGTCTACTTCACAACA TACGTACAGGTACGTCCCCCGCGGCCACGAGTCTTTACGCTGCGAGAGTA ACACATAGGAGACTTAGACAATAGGTGTGAACTCATTAATCCTCAGGGAA ACCCTAAACCCTACAGTAGCATGCATAAAGCCTTACCGTGTACTGAAGGA AGCAACCGATATTGGCGTCCAAACAGACACATGAACCGACCAGGTGCCCC AGAGGATTTGACGGCCAGCCCTGACTGCAGCCTGACGTCCGACACAAGGA TCCCGCATCACTTTCCGCATCCCTCGCAACCCCCGCGACAGCTTCACCCC ACTTGCCTCCCCTCATCCATCCTCCTCTATTTGCGAGCAGGGTGTTGTGC TGAAGGGAATATTCCCCCGGCAGGGAGGCGCCGCTCAGGTACGCCTTGTA GGCGGCAAGTGGGACTCGGGCGTTTCAGGTTCTTCAGGGGACGGTGGGAA GGCCCTCTCGGCGGTGCTGGCCTACCCAAAGGGAATCGCAGTGGATGCTG ACGACAATATCTACGTCGCCGAGTTCCAGGGAGAGAAGATCCGGAACATT TCTACTAGTGGGATTATCTCCACGTGCGTTGGCACAGGAAGCACGGTACG TGGGTAGGCTCCGCATATGTAATGGAGGGGGGCTACTGTAGGAAGTAGGG CTGTTGGCGTTGTCCGCAGCGATAATGTGTGCCGTGTTTCAAACAAAGCT TGATGCATTTCAAAGACGAGAATGTTTCTGTCGAACACTTTGCGATAACA AACCATGGGGTTTCCGTATGTAGGCGTTTGGGGGGGGGAAATGGTACAGC CACCATCGACAAAACCTCAGAGGAAGGCTATCATTTTTGCACCCCTCTTC CTCGGTAAGCGTTTCCCCAGCCCTCTGTTCGGTCTTGGTTTTCCATGCAA CACGGGCACGCACAACACGTAAGCATCCAATCGTAATCATGTTCCTGTTC CTCACTGAAGCGTTCGAACTCTTGAGCAACCACACGCGTATCTCATCCCA CCCGACCGTGCATTTGGACATTCGCCTTTGGACACAACTTCTATCTTCGG GCAAGGCGTATGAAGGAGATGGAGGACCGGCATCGGATGCTGGCCTTGAC TTACCCAACGCCATTGCTTTCATGCCGAGCACACCTGGAAGCAGGATGGC AATCGCGGACTTCGGTCACAACGCCGTACGCGTCGTCACGCCGATCTCGC TTTGTCCCTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8903:734..5144+

>mRNA_Ecto-sp9_F_contig8903.17090.1 ID=mRNA_Ecto-sp9_F_contig8903.17090.1|Name=mRNA_Ecto-sp9_F_contig8903.17090.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=4254bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8903:734..5144+ (Ectocarpus species9 EcSCA_722f female)
ATGCGGGCACCGACAGCAGCGGCCATGCCGCTGGTGGTGCTGCCGCTCAT
GCTGCCCATGACGCAAGGTGTGGCTCTCTCGCGTATGTTCGCCACGAGAC
AAGCCAGCCTCGACCAAAGCGGACCCGCCGGCATGATTCGCGGGGTACCG
AGTGCTGCAGGGCTCGAACCTGGCAAGAGAGAGGGCGGAAAGATATCAAG
GCGCAACACAGAGAGTTCCGGTCCGCTTGCCCTCTTGGACGTATGCTACA
TGGCAGATGATTGCACCCCTGGGTTGTACGTGATGCGGGCACCGACAGCA
GCGGCCATGCCGCTGGTGGTGCTGCCGCTCATGCTGCCCATGACGCAAGG
TGTGGCTCTCTCGCGTATGTTCGCCACGAGACAAGCCAGCCTCGACCAAA
GCGGACCCGCCGGCATGATTCGCGGGGTACCGAGTGCTGCAGGGCTCGAA
CCTGGCAAGAGAGAGGGCGGAAAGATATCAAGGCGCAACACAGAGAGTTC
CGGTCCGCTTGCCCTCTTGGACGTATGCTACATGGCAGATGATTGCACCC
CTGGGTTGTACGTGGAAGCCGGATTTCGGACACAATGCGAGAAAACGCCG
TTTTCTGGCGGAGACACCGTTTGCTGCAAACCCTTTGCGACACCATGTGA
CTCGGACAAGGAAGCCGGATTTCGGACACAATGCGAGAAAACGCCGTTTT
CTGGCGGAGACACCGTTTGCTGCAAACCCTTTGCGACACCATGTGACTCG
GACAAGGCTTGCTGCTCCGGGAACTGTGATGTTAGCCATACCCGGTGCGA
CGACGCCATCGTTCCGGCTCACCCGACGGACGAAGAGCACTCCCACGAGG
ATGAATTCTACTCGGATGAGATTGCCTACTACTCGGATGAGATTGCCTAC
TACTCGGATGAGATTACATCCGACACACCGAGGGACAGCTCTGGCGACAT
CATGGCCGATCAGCAGGACGGTGAGGGTGGTCAACTGTACGACGATGGGG
AAACTAGCTATGGCGAGTACGACGATGGCCAATATAGACAAGACAAGTAC
GATGACACGATCACTGGTTCCGGACTTGATCGGTATTGGGACGGATATTC
TGGCCGATACAGGTTTGGCCAGTACGACTACACGACCAGCTCGGAGGCCA
CTCCACGCGCGCAAGACAATCCGTTGGCGGAAGATTCAGGCACGCGTCCC
TATGAAGACCGTGTTGGGTCTCCAGACAACAACCACGATGACGAAAAGGG
CACCAAATTTCCACCCCCACCTGATGAAACAAGTGGAGCTTCTCCGAAAG
ATGACGTTGTTCATGAAGGCGGCGAGGGCGAAGAGTCCACGGCTGGCCCC
CTCTCGACATCTTCGACCGAGGAGAGTTTCACCACCATCTGTCAACCGGA
CTACGCCTCAGGGACAATCAAAACGATGGCATCGTCAGAAGCAAGAGTCG
AGGCGGTTGCTATGGACTCACAGGCTTGCTGCTCCGGGAACTGTGATGTT
AGCCATACCCGGTGCGACGACGCCATCGTTCCGGCTCACCCGACGGACGA
AGAGCACTCCCACGAGGATGAATTCTACTCGGATGAGATTGCCTACTACT
CGGATGAGATTGCCTACTACTCGGATGAGATTACATCCGACACACCGAGG
GACAGCTCTGGCGACATCATGGCCGATCAGCAGGACGGTGAGGGTGGTCA
ACTGTACGACGATGGGGAAACTAGCTATGGCGAGTACGACGATGGCCAAT
ATAGACAAGACAAGTACGATGACACGATCACTGGTTCCGGACTTGATCGG
TATTGGGACGGATATTCTGGCCGATACAGGTTTGGCCAGTACGACTACAC
GACCAGCTCGGAGGCCACTCCACGCGCGCAAGACAATCCGTTGGCGGAAG
ATTCAGGCACGCGTCCCTATGAAGACCGTGTTGGGTCTCCAGACAACAAC
CACGATGACGAAAAGGGCACCAAATTTCCACCCCCACCTGATGAAACAAG
TGGAGCTTCTCCGAAAGATGACGTTGTTCATGAAGGCGGCGAGGGCGAAG
AGTCCACGGCTGGCCCCCTCTCGACATCTTCGACCGAGGAGAGTTTCACC
ACCATCTGTCAACCGGACTACGCCTCAGGGACAATCAAAACGATGGCATC
GTCAGAAGCAAGAGTCGAGGCGGTTGCTATGGACTCACAGGGAAATGTGT
TTTACTCCGTCAGCAAAGGCCGGAGTGCCGGCGATGCTATACTGAGGGCG
GCGTCCTCTTCCCCCTCTAGTGCTAACACCAATGTAGACACCGACAACGA
TAACGATGGTGATGCCGTCGTCTACGTCGGCACCGGCATAATCCTTGCAA
TGGCCATCGATGCCGACGACAACCTCATCTTCACCATGGAAGACGCGCCC
GCCGTAAGTGGGGGAGTATTCTTGCTCTCGCGGCGGCAGATCAACCCGGG
CGGCGGCGTTGGGGCCGAGGATTCCAGTGGTACCGGTGTGTCTAGGTACG
ATTCCTTCTTCGAAATGCCTTCGGAGACTGAGACCGCAGAGACTTCGGCA
GTGAGCCTAGCCGCCGGTCTCGGTCCATTTTTGCCTGGCGTCGCCGTATG
CCCCGTCACGGGAGACGTGTACGTCACAAGGGGTCATACTGGGATAGCGA
GGCTGGTCAAGGGAACCGACGGGAGTTTCGGCCAAAAGGGAAATGTGTTT
TACTCCGTCAGCAAAGGCCGGAGTGCCGGCGATGCTATACTGAGGGCGGC
GTCCTCTTCCCCCTCTAGTGCTAACACCAATGTAGACACCGACAACGATA
ACGATGGTGATGCCGTCGTCTACGTCGGCACCGGCATAATCCTTGCAATG
GCCATCGATGCCGACGACAACCTCATCTTCACCATGGAAGACGCGCCCGC
CGTAAGTGGGGGAGTATTCTTGCTCTCGCGGCGGCAGATCAACCCGGGCG
GCGGCGTTGGGGCCGAGGATTCCAGTGGTACCGGTGTGTCTAGGTACGAT
TCCTTCTTCGAAATGCCTTCGGAGACTGAGACCGCAGAGACTTCGGCAGT
GAGCCTAGCCGCCGGTCTCGGTCCATTTTTGCCTGGCGTCGCCGTATGCC
CCGTCACGGGAGACGTGTACGTCACAAGGGGTCATACTGGGATAGCGAGG
CTGGTCAAGGGAACCGACGGGAGTTTCGGCCAAAAGATGGAATGGAATAT
GGTGGACATGGCCTTCAAGGACGGCGTGAAAACTCGAGCGCCGCTCATGG
TATGGGACATCGCCGTCAATAGCATCGGTATCGTCTACTTCACAACATAC
GTACAGATGGAATGGAATATGGTGGACATGGCCTTCAAGGACGGCGTGAA
AACTCGAGCGCCGCTCATGGTATGGGACATCGCCGTCAATAGCATCGGTA
TCGTCTACTTCACAACATACGTACAGCAGGGTGTTGTGCTGAAGGGAATA
TTCCCCCGGCAGGGAGGCGCCGCTCAGGTACGCCTTGTAGGCGGCAAGTG
GGACTCGGGCGTTTCAGGTTCTTCAGGGGACGGTGGGAAGGCCCTCTCGG
CGGTGCTGGCCTACCCAAAGGGAATCGCAGTGGATGCTGACGACAATATC
TACGTCGCCGAGTTCCAGGGAGAGAAGATCCGGAACATTTCTACTAGTGG
GATTATCTCCACGTGCGTTGGCACAGGAAGCACGCAGGGTGTTGTGCTGA
AGGGAATATTCCCCCGGCAGGGAGGCGCCGCTCAGGTACGCCTTGTAGGC
GGCAAGTGGGACTCGGGCGTTTCAGGTTCTTCAGGGGACGGTGGGAAGGC
CCTCTCGGCGGTGCTGGCCTACCCAAAGGGAATCGCAGTGGATGCTGACG
ACAATATCTACGTCGCCGAGTTCCAGGGAGAGAAGATCCGGAACATTTCT
ACTAGTGGGATTATCTCCACGTGCGTTGGCACAGGAAGCACGGCGTATGA
AGGAGATGGAGGACCGGCATCGGATGCTGGCCTTGACTTACCCAACGCCA
TTGCTTTCATGCCGAGCACACCTGGAAGCAGGATGGCAATCGCGGACTTC
GGTCACAACGCCGTACGCGTCGTCACGCCGATCTCGCTTTGTCCCTGAGC
GTATGAAGGAGATGGAGGACCGGCATCGGATGCTGGCCTTGACTTACCCA
ACGCCATTGCTTTCATGCCGAGCACACCTGGAAGCAGGATGGCAATCGCG
GACTTCGGTCACAACGCCGTACGCGTCGTCACGCCGATCTCGCTTTGTCC
CTGA
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