mRNA_Ecto-sp9_F_contig8900.17086.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8900.17086.1
Unique NamemRNA_Ecto-sp9_F_contig8900.17086.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8900.17086.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8900contigEcto-sp9_F_contig8900:104..1124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1021
Cds size657
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8900.17086.1prot_Ecto-sp9_F_contig8900.17086.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8900 335..991 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930946.5126135-UTR-Ecto-sp9_F_contig8900:103..3341622930946.5126135-UTR-Ecto-sp9_F_contig8900:103..334Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8900 104..334 +
1692278961.7153535-UTR-Ecto-sp9_F_contig8900:103..3341692278961.7153535-UTR-Ecto-sp9_F_contig8900:103..334Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8900 104..334 +
1622930946.5570517-UTR-Ecto-sp9_F_contig8900:991..11241622930946.5570517-UTR-Ecto-sp9_F_contig8900:991..1124Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8900 992..1124 +
1692278961.7494013-UTR-Ecto-sp9_F_contig8900:991..11241692278961.7494013-UTR-Ecto-sp9_F_contig8900:991..1124Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8900 992..1124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930946.5333066-CDS-Ecto-sp9_F_contig8900:334..9911622930946.5333066-CDS-Ecto-sp9_F_contig8900:334..991Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8900 335..991 +
1692278961.7301319-CDS-Ecto-sp9_F_contig8900:334..9911692278961.7301319-CDS-Ecto-sp9_F_contig8900:334..991Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8900 335..991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8900.17086.1

>prot_Ecto-sp9_F_contig8900.17086.1 ID=prot_Ecto-sp9_F_contig8900.17086.1|Name=mRNA_Ecto-sp9_F_contig8900.17086.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=219bp
MEYTLPMDNNHLMENHLNTKKGRHHTNHSIPRRRKPTTRKQPRHLGKGFA
VYYQPSSTRLRSPFPDIAPAKQRVCAAPRFDTLGKSSPLETGWVHTGGGA
QHARSDDTLSTRTLTCPIPLPSHFHPKERTAHFDQNSHLSHPTSIPLPPE
RTHPPLLRFSELLFEGVPCFALYVLCGQHPSVDVQNEKPTNKHSLSSYPS
SAGPLDNSFVPLYTHRQR*
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mRNA from alignment at Ecto-sp9_F_contig8900:104..1124+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8900.17086.1 ID=mRNA_Ecto-sp9_F_contig8900.17086.1|Name=mRNA_Ecto-sp9_F_contig8900.17086.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1021bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8900:104..1124+ (Ectocarpus species9 EcSCA_722f female)
CGGAGCAACGACCACAAAAAAAAACTCGCGTTTCTCGCGGCCATGACACG
AGCGGATGGATAGATATGACGCCATCTCGTGCCACGACGAAAAAACGAAA
AAACTACGAGGAACCGCAACAAAACGATCACTCCGCCAGCCGAATAACAC
CGCTTTTCGCCATCCACGGAGCGGCAGAGATTCCCCCAGCGCGGGTCCTG
CCCAAAAGCAAACATTTGCGGGGGCGGTTTCATGGAGTACACCCTTCCCA
TGGATAACAATCATCTCATGGAAAACCATCTCAACACAAAGAAGGGACGC
CATCATACCAATCATTCCATTCCACGAAGGAGGAAACCTACTACCAGAAA
ACAACCACGGCACCTCGGGAAAGGCTTCGCGGTCTACTACCAGCCATCAT
CCACCCGCCTTCGTTCCCCCTTTCCGGACATCGCGCCCGCCAAACAGAGG
GTGTGCGCCGCGCCACGTTTTGACACGTTAGGGAAAAGCAGCCCTCTTGA
GACCGGCTGGGTACACACAGGGGGGGGGGCACAGCACGCACGCTCCGACG
ACACTCTCTCGACCAGAACTCTCACTTGTCCCATCCCACTTCCATCCCAC
TTCCACCCGAAAGAACGCACCGCACACTTCGACCAGAACTCTCACTTGTC
CCATCCCACTTCCATCCCACTTCCACCTGAAAGGACGCACCCACCCTTGC
TCCGATTTTCTGAGCTGCTCTTCGAAGGCGTTCCTTGTTTCGCTCTCTAC
GTTCTGTGCGGACAACATCCTTCCGTCGACGTTCAAAACGAAAAACCAAC
AAATAAACATTCCCTCTCTTCCTATCCCTCCTCTGCCGGCCCGCTGGACA
ACAGTTTCGTGCCACTATATACGCACCGACAACGCTAGTTCTTCTGTGAT
GTTGAACCCAGCACAGCGCTGCCGCCAGCACCGCCACCGCTACCCCCCGC
TCCCCCTTCCCTCGACTGAGACGAGGAGGGAGGGACCGACATTATCGATT
GAGGCGCCCACGAGCCCGACC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8900:104..1124+

>mRNA_Ecto-sp9_F_contig8900.17086.1 ID=mRNA_Ecto-sp9_F_contig8900.17086.1|Name=mRNA_Ecto-sp9_F_contig8900.17086.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1314bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8900:104..1124+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGTACACCCTTCCCATGGATAACAATCATCTCATGGAAAACCATCT
CAACACAAAGAAGGGACGCCATCATACCAATCATTCCATTCCACGAAGGA
GGAAACCTACTACCAGAAAACAACCACGGCACCTCGGGAAAGGCTTCGCG
GTCTACTACCAGCCATCATCCACCCGCCTTCGTTCCCCCTTTCCGGACAT
CGCGCCCGCCAAACAGAGGGTGTGCGCCGCGCCACGTTTTGACACGTTAG
GGAAAAGCAGCCCTCTTGAGACCGGCTGGGTACACACAGGGGGGGGGGCA
CAGCACGCACGCTCCGACGACACTCTCTCGACCAGAACTCTCACTTGTCC
CATCCCACTTCCATCCCACTTCCACCCGAAAGAACGCACCGCACACTTCG
ACCAGAACTCTCACTTGTCCCATCCCACTTCCATCCCACTTCCACCTGAA
AGGACGCACCCACCCTTGCTCCGATTTTCTGAGCTGCTCTTCGAAGGCGT
TCCTTGTTTCGCTCTCTACGTTCTGTGCGGACAACATCCTTCCGTCGACG
TTCAAAACGAAAAACCAACAAATAAACATTCCCTCTCTTCCTATCCCTCC
TCTGCCGGCCCGCTGGACAACAGTTTCGTGCCACTATATACGCACCGACA
ACGCTAGATGGAGTACACCCTTCCCATGGATAACAATCATCTCATGGAAA
ACCATCTCAACACAAAGAAGGGACGCCATCATACCAATCATTCCATTCCA
CGAAGGAGGAAACCTACTACCAGAAAACAACCACGGCACCTCGGGAAAGG
CTTCGCGGTCTACTACCAGCCATCATCCACCCGCCTTCGTTCCCCCTTTC
CGGACATCGCGCCCGCCAAACAGAGGGTGTGCGCCGCGCCACGTTTTGAC
ACGTTAGGGAAAAGCAGCCCTCTTGAGACCGGCTGGGTACACACAGGGGG
GGGGGCACAGCACGCACGCTCCGACGACACTCTCTCGACCAGAACTCTCA
CTTGTCCCATCCCACTTCCATCCCACTTCCACCCGAAAGAACGCACCGCA
CACTTCGACCAGAACTCTCACTTGTCCCATCCCACTTCCATCCCACTTCC
ACCTGAAAGGACGCACCCACCCTTGCTCCGATTTTCTGAGCTGCTCTTCG
AAGGCGTTCCTTGTTTCGCTCTCTACGTTCTGTGCGGACAACATCCTTCC
GTCGACGTTCAAAACGAAAAACCAACAAATAAACATTCCCTCTCTTCCTA
TCCCTCCTCTGCCGGCCCGCTGGACAACAGTTTCGTGCCACTATATACGC
ACCGACAACGCTAG
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