mRNA_Ecto-sp9_F_contig890.17084.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig890.17084.1 vs.
Match: Alpha-1,6-mannosyl-glycoprotein (6-beta-N-acetylglucosaminyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS43_9PHAE) HSP 1 Score: 353 bits (907), Expect = 1.510e-118 Identity = 170/181 (93.92%), Postives = 173/181 (95.58%), Query Frame = 1
Query: 718 MFILDYFGSDEPHANLGVPLTRHLTAFPVTAEHQRTFLGYRVDPTRNKTALRKPATKRRQGVIWGKTKDKLFGNRRLILALADMVELHSTVAPEDAFIMHDNIVYHGHLPPDEWNQLLQESKFIIGLGNPLLGPSAVDAVRAGCAYLNPIFLRPEKKIYNSQHPFLAQRVGEPYVCSFEQH 1260
MFILDYFGSDEPHANLGVPL RHLTAFP+TAEHQRTFLGY+VDP RNK L KPATKRRQGVIWGKTKDKLFGNRRLILALADMVELHSTVAPEDAFIMHDNIVYHG+LP DEWNQLLQESKFIIGLGNPLLGPSAVDAV AGCAYLNPIF RPEKKIYNSQHPFLAQRVGEPYVCSFEQH
Sbjct: 1 MFILDYFGSDEPHANLGVPLKRHLTAFPITAEHQRTFLGYQVDPKRNKIPLSKPATKRRQGVIWGKTKDKLFGNRRLILALADMVELHSTVAPEDAFIMHDNIVYHGYLPQDEWNQLLQESKFIIGLGNPLLGPSAVDAVTAGCAYLNPIFFRPEKKIYNSQHPFLAQRVGEPYVCSFEQH 181
BLAST of mRNA_Ecto-sp9_F_contig890.17084.1 vs.
Match: Alpha-1,6-mannosyl-glycoprotein (6-beta-N-acetylglucosaminyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWN5_HETAK) HSP 1 Score: 258 bits (658), Expect = 4.650e-79 Identity = 143/316 (45.25%), Postives = 198/316 (62.66%), Query Frame = 1
Query: 439 GKGMRVLIYTMDSIQTTVAKSMKGGPAGEIIIRESLTRTLTEAGVEVEVATSDGDFERRAEAMDIYNGVVVDPWTWAGNGWQLKSQLQDHRGKMFILDYFGSDEPHANLGVPL-TRHLTAFPVTAEHQRTFLGYRVDPTRNKTALRKPAT--KRRQGVIWGKTKDKLFGNRRLILALADMVELHSTVAPEDAFI-MHDNIVYHGHLPPDEWNQLLQESKFIIGLGNPLLGPSAVDAVRAGCAYLNPIFLRPEKKIYNSQHPFLAQRVGEPYVCSFEQHNAYAAVDCARRALEQDLSPMIPQELTKEAHAARVRDIF 1374
G+ R LI+TMDSI + V S KGGPAGEI+IR +L L E G V+ ATSD +F+R + D Y+ ++VDPWT+A GW K+ L +++L +FG+ + NL + L T+ LTAFP TA H F+GY T N A R A K+ QGV+WGK L G +I A+AD+ ELH+T+ +D + +V H HL P+ W+ LL ESKF++GL +PLLGPSAVDAV GC ++NP++ +P+ Y SQHP++A VGEPYVC+ + C ++AL L P IP++LTKE + R+R+IF
Sbjct: 7 GRPPRALIFTMDSITSYVEGSRKGGPAGEILIRTALEHGLRELGFAVDTATSDAEFDRLGKQRDDYSVLIVDPWTYAKKGWVPKTPLVGREKDVYVLSFFGT-QGLKNLKIDLRTQVLTAFP-TAPHND-FIGYFY--TDNSLAARAAAVGKKKPQGVLWGKNAKYLKGKEAVIRAVADLCELHTTIPEKDLPAGLRGALVVHQHLDPNGWHSLLAESKFLLGLEDPLLGPSAVDAVSNGCMFINPVYSKPKLDFYTSQHPYIADTVGEPYVCNTRLQEISSVEKCVQKALGSSLKPFIPKDLTKEQYLIRLRNIF 317
BLAST of mRNA_Ecto-sp9_F_contig890.17084.1 vs.
Match: Alpha-1,6-mannosyl-glycoprotein (6-beta-N-acetylglucosaminyltransferase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YPU8_9EUKA) HSP 1 Score: 226 bits (577), Expect = 1.870e-67 Identity = 127/291 (43.64%), Postives = 177/291 (60.82%), Query Frame = 1
Query: 517 AGEIIIRESLTRTLTEAGVEVEVATSDGDFERRAEAMDIYNGVVVDPWTWAGNGWQLKSQLQDHRGKMFILDYFGSD-EPHANLGVPLTRHLTAFPVTAEHQR-TFLGYRV-DPTRNKTALRKPATKRRQGVIWGKTKDKLFGNRRLILALADMVELHSTVAPEDAFIMHDNIVYHGHLPPDEWNQLLQESKFIIGLGNPLLGPSAVDAVRAGCAYLNPIFLRPEKKIYNSQHPFLAQRVGEPYVCSFE-QHNAYAAVDCARRALEQDLSPMIPQELTKEAHAARVRDIFE 1377
+GE+ IR +L L GVE V SD +FER +++D Y+ + +DPWTWA GW++K L H K++ILD+FG D P N VPL+RHLTA+PV H R TFLGY + D + RK A GVIWGK G + +A +V L ST AP+DA H NI GHL P+ W LL+ KF++GLG+PL+GPSA+DA+ AG +LNP + +P+ Y SQHPF A+ VC+F+ + + V+C +A+ QDL+P +P ELT ++ R++ IF+
Sbjct: 2 SGEMTIRLALCDGLAAVGVECHVVRSDSEFEREGKSLDKYSLIFLDPWTWAARGWKMKPFLHGHEQKLYILDFFGGDGHPGLNPTVPLSRHLTAYPV---HPRNTFLGYFLPDAVSHPQGNRKKA-----GVIWGKDPKYYHGKHVFLTKVASIVPLVST-APQDALPAHPNITSVGHLSPEGWEALLRSHKFLLGLGDPLVGPSAIDAIAAGAMFLNPHYRQPKLDHYRSQHPF-AESSTPDSVCAFDLEGSGEDLVECVEKAVGQDLAPSVPTELTAASYMERLKSIFK 282
BLAST of mRNA_Ecto-sp9_F_contig890.17084.1 vs.
Match: Alpha-1,6-mannosyl-glycoprotein (6-beta-N-acetylglucosaminyltransferase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W0V7_9CRYP) HSP 1 Score: 223 bits (569), Expect = 1.980e-61 Identity = 122/311 (39.23%), Postives = 177/311 (56.91%), Query Frame = 1
Query: 442 KGMRVLIYTMDSIQTTVAKSMKGGPAGEIIIRESLTRTLTEAGVEVEVATSDGDFERRAEAMDIYNGVVVDPWTWAGNGWQLKSQLQDHRGKMFILDYFGSDEPHANLGVPLTRHLTAFPVTAEHQRTFLGYRVDPTRNKTALRKPATKRRQGVIWGKTKDKLFGNRRLILALADMVELHSTVAPEDAFIMHDNIVYHGHLPPDEWNQLLQESKFIIGLGNPLLGPSAVDAVRAGCAYLNPIFLRPEKKIYNSQHPFLAQRVGEPYVCSFEQHNAYAAVDCARRALEQDLSPMIPQELTKEAHAARVRDIF 1374
K +VLI+TMDS+ T V+ S +GGP+GEI++R++L + L GV VA ++ F + Y +++D WTWA G + K L+ H K+F+LD+FG+ A + +R LTA+P + +FLG+ V + LR QGVIWGK ++LALA + +H T+ E H+NI +HG L D+W +LL ESK+ GLGNPL GPSA+DA+ AGC Y +P F P Y SQ+PFL+ RVG P+VC + + CA AL + P+I + T++ H+ R+ IF
Sbjct: 176 KKTKVLIFTMDSLSTRVSASNRGGPSGEIVVRKALAQGLLGFGVSSVVADTESKFTEHMKHAGEYCMIILDLWTWAARGGKAKPFLKPHMKKVFLLDFFGNASTSATV-FGNSRILTAYPTA---RFSFLGWFVKEAPRRKKLR-------QGVIWGKQASYFKDRWPVVLALARLSSIHLTIKREKGMPEHENITWHGTLNSDQWFRLLAESKYFAGLGNPLAGPSAIDAIAAGCVYFDPTFKEPPLPTYTSQNPFLSSRVGAPHVCVVQMGSRSEYERCALAALTGSVQPLIVADYTEKEHSERISKIF 475
BLAST of mRNA_Ecto-sp9_F_contig890.17084.1 vs.
Match: Alpha-1,6-mannosyl-glycoprotein (6-beta-N-acetylglucosaminyltransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPM8_9STRA) HSP 1 Score: 189 bits (480), Expect = 2.020e-54 Identity = 91/164 (55.49%), Postives = 119/164 (72.56%), Query Frame = 1
Query: 886 KRRQGVIWGKTKDKLFGNRRLILALADMVELHSTVAPEDAFIMHDNIVYHGHLPPDEWNQLLQESKFIIGLGNPLLGPSAVDAVRAGCAYLNPIFLRPEKKIYNSQHPFLAQRVGEPYVCSFEQHNAYAAVDCARRALEQDLSPMIPQELTKEAHAARVRDIFE 1377
K+RQGVIWGK G L+ ALAD VELH+TV+ + + H +IVYHGHL P+ W LL ES+F+IGLGNPL+GPSAVDAV AGC Y+NP + P K++Y+SQHP+LA++VGEPYVC+ ++ A C +AL DL PMIP+ELT+ +++RV IFE
Sbjct: 14 KKRQGVIWGKDPKHFMGKEALLKALADEVELHATVSGKP--VKHPSIVYHGHLTPEGWQSLLAESRFMIGLGNPLVGPSAVDAVVAGCMYINPKYSAPVKEVYHSQHPYLAEQVGEPYVCTANLNDVAAVKACVHQALSADLPPMIPRELTEAEYSSRVEAIFE 175
BLAST of mRNA_Ecto-sp9_F_contig890.17084.1 vs.
Match: Alpha-1,6-mannosyl-glycoprotein (6-beta-N-acetylglucosaminyltransferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YA05_9STRA) HSP 1 Score: 186 bits (472), Expect = 2.830e-51 Identity = 115/327 (35.17%), Postives = 178/327 (54.43%), Query Frame = 1
Query: 451 RVLIYTMDSIQTTVAKSMKGG-PAGEIIIRESLTRTLTEAGVEVEVATSDGDFERRAEAMDIYNGVVVDPWTWAGNGWQLKSQLQDHRGKMFILDYFG-SDEPHANLGVPLTRHLTAFPVTAEHQRTFLGYRVDPTRNKTALRKPATKRRQGVIWGKTKDKLFGNRRLIL-ALADMVELHSTVAPEDAFIMHDNIVYHGHLPPDEWNQLLQESKFIIGLGNPLLGPSAVDAVRAGCAYLNPIFLRPEK-----------KIYNSQHPFLAQRVGEPYVCSFEQHNAYAAVDCARRALEQD-LSPMIPQELTKEAHAARVRDIFEPLI 1386
+VL++T DS++ S +G PAGEI +R SL L + G V+ AT++ +F AE Y+ ++DPWTWAG+ Q + LQ ++ILDYFG + P + V + LTAFP+ A++ TF+GY V+ + K+ QGV GK + R L A+AD V++ +T++P + + H NI + GH P+E++QLL S+F+I G+ L PSA+DAV GC Y+N ++ +P Y S+HP+L +RVG PYVC+ + + C A+ L P +P T A+ R+ +FE ++
Sbjct: 22 KVLLFTTDSMK---GYSTRGNVPAGEIRMRWSLAIALGDLGAVVDTATTEEEFRWLAEQHAAYSAYILDPWTWAGSSRQPREFLQGREDSVYILDYFGRASFPSDGVQVDMKHVLTAFPLPAKN--TFIGYGVEQPLARD-------KKTQGVFLGKLHEYSPRYRMETLKAIADKVKIVTTISPGETLLSHPNIEFLGHKTPEEFDQLLATSRFLITFGDTLNEPSAMDAVANGCVYINTVYNKPRSINADLTRGDYGVAYRSEHPYLGERVGPPYVCTAREGELDDYMHCVDEAMRVGPLDPFVPHPFTDSAYRQRISTVFENVL 336
BLAST of mRNA_Ecto-sp9_F_contig890.17084.1 vs.
Match: Alpha-1,6-mannosyl-glycoprotein (6-beta-N-acetylglucosaminyltransferase n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KE09_GUITH) HSP 1 Score: 170 bits (430), Expect = 1.720e-43 Identity = 121/352 (34.38%), Postives = 181/352 (51.42%), Query Frame = 1
Query: 451 RVLIYTMDSIQTTVAKSMKGGPAGEIIIRESLTRTLTEAGVEVEVATSDGDF-----ERRAEAMDIYNGVVVDPWTW-----AGNGWQLKSQLQDHRGKMFILDYFGSDE---PHANLGVPLTRHLTAFPVTAEHQRTFLGY---------RVDPTR------NKTALRKPATKRRQ--GVIWGKTKDKLFGNRRLILALADMVELHSTVAPEDAFIMHDNIVYH--GHLPPDEWNQLLQESKFIIGLGNPLLGPSAVDAVRAGCAYLNPIFLR-----PE--KKIYNSQHPFLAQRVGEPYVCSFE-----QHNAYAAVDCARRALEQDLSPMIPQELTKEAHAARVRDIF 1374
RVLI+TMDS++TT+ GGPAGEI +R SL LT G +++VA D F + + Y ++DPWTW +G ++ + L +FILD+FG+ + +L P + L+AFP +FLG+ ++ ++ N+TA +T +Q GV+WGK + L + +I A+ + EL S + P+ + H G+ +E+ ++L SKF++GLG+PL GPSA+DA+ G YLNP F PE K Y SQHP++A+ G YVCSF + + C RAL L P IP+ T+E + +RVR IF
Sbjct: 172 RVLIFTMDSLKTTLEAVKSGGPAGEIFVRTSLETVLTSLGFKIDVADHDMSFAAYSNQALGAKCNYYRFFIMDPWTWIERAPSGMLYRARPILAGRERDVFILDFFGNKQLSLAGVSLNFPTEQRLSAFPTN--FGGSFLGFFYSNQTLSKAMEASKKRVVVMNETAGNASSTDGQQLRGVVWGKKPEYLEKGQGIISAVLEKCELVSFL-PQMGNLQAKFPRLHNLGYKTKEEFREILASSKFLLGLGDPLSGPSALDAMMVGAMYLNPSFPNKNSDYPEELKSFYTSQHPYMAEH-GGAYVCSFNMISRSEPDQAQLYQCVERALRSKLEPQIPRHFTREEYESRVRSIF 519
BLAST of mRNA_Ecto-sp9_F_contig890.17084.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF21_ECTSI) HSP 1 Score: 149 bits (375), Expect = 3.510e-40 Identity = 75/96 (78.12%), Postives = 78/96 (81.25%), Query Frame = 1
Query: 448 MRVLIYTMDSIQTTVAKSMKGGPAGEIIIRESLTRTLTEAGVEVEVATSDGDFERRAEAMDIYNGVVVDPWTWAGNGWQLKSQLQDHRGKMFILDY 735
MRVLIYTMDSIQTTVAKSMKGGPAGEIIIRESLTRTLTEAGVEVEVATSDGDFERRAEAM +YN VVVDPWTWAG G ++ G Y
Sbjct: 1 MRVLIYTMDSIQTTVAKSMKGGPAGEIIIRESLTRTLTEAGVEVEVATSDGDFERRAEAMGVYNAVVVDPWTWAGKGKAKTVEIMRDTGYQLATGY 96
BLAST of mRNA_Ecto-sp9_F_contig890.17084.1 vs.
Match: Hypothetical (protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U380_9EUKA) HSP 1 Score: 138 bits (347), Expect = 6.240e-35 Identity = 81/185 (43.78%), Postives = 109/185 (58.92%), Query Frame = 1
Query: 457 LIYTMDSIQTTVAKSMKGGPAGEIIIRESLTRTLTEAGVEVEVATSDGDFERRAEAMDIYNGVVVDPWTWAGNGWQLKSQLQDHRGKMFILDYFGSD-EPHANLGVPLTRHLTAFPVTAEHQR-TFLGYRVDPTRNKTALRKPATKRRQGVIWGKTKDKLFGNRRLILALADMVELHSTVAPEDA 1005
L++TMDSIQ+ + +S +GG +GE+ IR +L L GV+ VA SD +FER +++D Y + +DPWTWA GW++K L H K++ILD+FG D P N VPL RHLTA+PV H R TFLGY + RK A GVIWGK G + + +A + L ST AP+ A
Sbjct: 11 LVFTMDSIQSRIDESKRGGASGEMTIRLALCDGLAAVGVKCYVARSDSEFEREGKSLDKYVLIFLDPWTWAARGWKMKPFLLGHEQKLYILDFFGGDGHPALNPTVPLQRHLTAYPV---HPRNTFLGYFLPDAAPVRGKRKKA-----GVIWGKDPKYYQGKQSFLTKVASVAPLVST-APQSA 186
BLAST of mRNA_Ecto-sp9_F_contig890.17084.1 vs.
Match: Alpha-1,6-mannosyl-glycoprotein (6-beta-N-acetylglucosaminyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVM7_HETAK) HSP 1 Score: 131 bits (330), Expect = 5.910e-33 Identity = 58/117 (49.57%), Postives = 81/117 (69.23%), Query Frame = 1
Query: 1024 IVYHGHLPPDEWNQLLQESKFIIGLGNPLLGPSAVDAVRAGCAYLNPIFLRPEKKIYNSQHPFLAQRVGEPYVCSFEQHNAYAAVDCARRALEQDLSPMIPQELTKEAHAARVRDIF 1374
+V H HL P+ W+ LL ESKF++GL +PLLGPSAVDAV GC ++NP++ +P+ Y SQHP++A VGEPYVC+ + C ++AL L P IP++LTKE + R+R+IF
Sbjct: 28 LVVHQHLDPNGWHSLLAESKFLLGLEDPLLGPSAVDAVSNGCMFINPVYSKPKLDFYTSQHPYIADTVGEPYVCNTRLQEISSVEKCVQKALGSSLKPFIPKDLTKEQYLIRLRNIF 144 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig890.17084.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig890.17084.1 >prot_Ecto-sp9_F_contig890.17084.1 ID=prot_Ecto-sp9_F_contig890.17084.1|Name=mRNA_Ecto-sp9_F_contig890.17084.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=468bp MARPYGQPARGAMNVISSLLLYLTAGRLLFVLRPGWNPSRNQQPKIDQVGback to top mRNA from alignment at Ecto-sp9_F_contig890:20429..27386+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig890.17084.1 ID=mRNA_Ecto-sp9_F_contig890.17084.1|Name=mRNA_Ecto-sp9_F_contig890.17084.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=6958bp|location=Sequence derived from alignment at Ecto-sp9_F_contig890:20429..27386+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig890:20429..27386+ >mRNA_Ecto-sp9_F_contig890.17084.1 ID=mRNA_Ecto-sp9_F_contig890.17084.1|Name=mRNA_Ecto-sp9_F_contig890.17084.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2808bp|location=Sequence derived from alignment at Ecto-sp9_F_contig890:20429..27386+ (Ectocarpus species9 EcSCA_722f female)back to top |