mRNA_Ecto-sp9_F_contig89.17080.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig89.17080.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ57_ECTSI) HSP 1 Score: 1673 bits (4333), Expect = 0.000e+0 Identity = 919/997 (92.18%), Postives = 938/997 (94.08%), Query Frame = 1
Query: 70 MERELEVQMKDSLAESQALREKFQDDLDCMQQDAQRRLAEEKVKWKEHSLCAEREKADAIQQAEFLQEQLIASAHEVWIAKERIFQLESEAQSMRSSPPQVVERADPAAVAEVMRLRDKVAARDEQVRRAQRAAAEAQEAVGRESAINQGFQRDVDNARHRLLTVQGSLAELSEENAGLRRELESERIKTVAGSRRLADAVERQDNALAEVRRDSAQLREQRDRRVCIPALAQDSAMLGIKLHQLRKKQAAGRLLHALGLARHRSLATALRALVVRVTNDIHLKKQTRQQEEHASEVASLEADVQGAETRCRDARRRLDALRDSRETVSRLTVKACWRRHQGMVIVGAAAEEEKPGGDASALVVRWCFWGWARVAQGGCTAVAKKARRVEAEKELTGARELLLAADENARRAEAEHNQHLATAEALTEQIKQRTAELEVARTALGAAKSTAASARGRCIRLGAARVLKVLKRNRRDRLAQTFSCWVDAGRVLPVVPSTEENIASLGPQEGRRVVSETCAGHRQGLGQQQEDAPARSRDGFGPPAADSTTDLCALSITTSGGRGAQGGVHTADIDEDKGFVVASTEDEGGGAYLDALPSVVASNGRSRDNRRDAHTDGVNDTMASNGITPAPLDISSIPSTPVAASHKRPSNQDQGTPRCGSLFVGGYPSLGRRSTTSLSTASSKPAAAKSNISGASNPVPVPGGSGWSANLDLPRLVLSLRAAVGEELYAVGERLLRCVEADHREIHGRSYHPAPITPAEREQFHVCLEDAARGRLRRAVLTFLRVQESHRAAAVEKDCGKVEKTRRGRRVRMNGWTCGAGGGXXXXXGCLRGAGPKSARNAEEGQDEISSLTTGPLSTPAEKARAARVLRDRLVPLLENAADAWGRHRQPWQNTPRAVGRRAATESDTGRFQRRTTVSTRQKNNPHRLRRGNGDETGLSSPRRGRLCCLDSGAGPRKFWETVAGPRLAEASWNVDIKALEQQLWDLAMLVRGPDLR 3060
MERELE QMKDSLAESQALREKFQDDL+CMQQDAQRRL EEK KWKEH L AE EKADAIQQAEFLQEQLI SA+EVWIA+ERIFQLESEAQS+RSSPPQVVERADPAAVAEVMRLRDKVAARDEQ RRAQRAAAEAQEAVGRESAINQGFQRDVDNARHRLLTVQGSLAELSEENAGLRRELE+ERIKTVAGSRRLADAV+RQDNALAEVRRDSAQLREQRDR LAQDSA+LGIKLHQLRKKQAA RLLHAL LARHRSLATALRALVVRVTNDIHLKKQTRQQEEHASEVASLEADVQGAETRCR+ARR LDALRDSRETVSRLTVKACWRRHQGMVI GAAAEEEKPGGDASALVVRWCFWGWARVAQGGCTAVAKKARRVEAEKEL GARELLLAADENAR AEAEHNQHLATAEAL EQIKQRTAELEVARTALGAAKSTA+SARGRCIRLGAARVLKVL+RNRRDRLAQTFSCWVDAGRV PVVPSTEE+IASLGPQEGRRVVSETCAGHRQGL QQQ DA ARSRDGFGPP ADSTTDLCALS TTSGGRGAQGG+HTA IDEDKGFVVASTEDEGGGA+LDALPSV ASN RSRDNRRDAHTDGVNDTMASNG TPAPLD+SSIPSTPV ASHKRPSNQDQ TPRC SLFV GYPS GRRSTTSLSTASSKPAA+KS+ISGASNPV PGGSGW AN DLPRLVLSLRAAVGEELYAVGERLLRCVEAD+RE HGRSYHP PITPAEREQF VCLEDAARGRLRRAVLTFLRVQESHRAAAVEKD G VEKTR+GRRVR+NGWTCG XXXXX CLRGA KSARNAEEGQD ISSLTTGPLST AEKARAARVLRDRLVPLLENAADAWGRHRQPWQNTPRAVGRRAATESD RFQRRTTVSTRQKNNPHRLRRGNGDETGLSSP RGRLCCLDSGAGPRKFWE VAGPRL EASWNVDIKALEQQLWDLAMLVRGPDLR
Sbjct: 1 MERELEAQMKDSLAESQALREKFQDDLECMQQDAQRRLVEEKAKWKEHILRAEGEKADAIQQAEFLQEQLITSANEVWIARERIFQLESEAQSIRSSPPQVVERADPAAVAEVMRLRDKVAARDEQARRAQRAAAEAQEAVGRESAINQGFQRDVDNARHRLLTVQGSLAELSEENAGLRRELENERIKTVAGSRRLADAVDRQDNALAEVRRDSAQLREQRDR------LAQDSAILGIKLHQLRKKQAARRLLHALYLARHRSLATALRALVVRVTNDIHLKKQTRQQEEHASEVASLEADVQGAETRCRNARRGLDALRDSRETVSRLTVKACWRRHQGMVIAGAAAEEEKPGGDASALVVRWCFWGWARVAQGGCTAVAKKARRVEAEKELAGARELLLAADENARCAEAEHNQHLATAEALAEQIKQRTAELEVARTALGAAKSTASSARGRCIRLGAARVLKVLERNRRDRLAQTFSCWVDAGRVFPVVPSTEEDIASLGPQEGRRVVSETCAGHRQGLAQQQGDALARSRDGFGPPTADSTTDLCALSTTTSGGRGAQGGMHTAGIDEDKGFVVASTEDEGGGAHLDALPSVAASNDRSRDNRRDAHTDGVNDTMASNGNTPAPLDVSSIPSTPVTASHKRPSNQDQRTPRCSSLFVDGYPSPGRRSTTSLSTASSKPAASKSSISGASNPVSGPGGSGWPANPDLPRLVLSLRAAVGEELYAVGERLLRCVEADYRETHGRSYHPVPITPAEREQFRVCLEDAARGRLRRAVLTFLRVQESHRAAAVEKDRGNVEKTRQGRRVRVNGWTCGGXXXXXXXXXCLRGARRKSARNAEEGQDGISSLTTGPLSTTAEKARAARVLRDRLVPLLENAADAWGRHRQPWQNTPRAVGRRAATESDKSRFQRRTTVSTRQKNNPHRLRRGNGDETGLSSPGRGRLCCLDSGAGPRKFWEAVAGPRLVEASWNVDIKALEQQLWDLAMLVRGPDLR 991
BLAST of mRNA_Ecto-sp9_F_contig89.17080.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L397_9PHAE) HSP 1 Score: 1623 bits (4204), Expect = 0.000e+0 Identity = 888/989 (89.79%), Postives = 901/989 (91.10%), Query Frame = 1
Query: 319 IFQLESEAQSMRSSPPQVVERADPAAVAEVMRLRDKVAARDEQVRRAQRAAAEAQEAVGRESAINQGFQRDVDNARHRLLTVQGSLAELSEENAGLRRELESERIKTVAGSRRLADAVERQDNALAEVRRDSAQLREQRDRRVCIPALAQDSAMLGIKLHQLRKKQAAGRLLHALGLARHRSLATALRALVVRVTNDIHLKKQTRQQEEHASEVASLEADVQGAETRCRDARRRLDALRDSRETVSRLTVKACWRRHQGMVIVGAAAEEEKPGGDASALVVRWCFWGWARVAQGGCTAVAKKARRVEAEKELTGARELLLAADENARRAEAEHNQHLATAEALTEQIKQRTAELEVARTALGAAKSTAASARGRCIRLGAARVLKVLKRNRRDRLAQTFSCWVDAGRVLPVVPSTEENIASLGPQEGRRVVSETCAGHRQGLGQQQEDAPARSRDGFGPPAADSTTDLCALSITTSGGRGAQGGVHTADIDEDKGFVVASTEDEGGGAYLDALPSVVASNGRSRDNRRDAHTDGVNDTMASNGITPAPLDISSIPSTPVAASHKRPSNQDQGTPRCGSLFVGGYPSLGRRSTTSLSTASSKPAAAKSNISGASNPVPVPGGSGWSANLDLPRLVLSLRAAVGEELYAVGERLLRCVEADHREIHGRSYHPAPITPAEREQFHVCLEDAARGRLRRAVLTFLRVQESHRAAAVEKDCGKVEKTRRGRRVRMNGWTCGAGGGXXXXXGCLRGAGPKSARNAEEGQDEISSLTTGPLSTPAEKARAARVLRDRLVPLLENAADAWGRHRQPWQNTPRAVGRRAATESDTGRFQRRTTVSTRQKNNPHRLRRGNGDETGLSSPRRGRLCCLDSGAGPRKFWETVAGPRLAEASWNVDIKALEQQLWDLAMLVRGPDLRGHRERHQGFALNRCELLRRTLDVRVFEVLLLYTRTRLIWDGIDNDYDNDHDGNEGGG-DFYNNSSTRLDVDAGVE 3282
+FQLESEAQSMRSSPPQVVERADPAAVAEVMRLRDKVAARDEQ RRAQRAAAEAQEAVGRESAINQGFQRDVDNARHRLLTVQGSLAELSEENAGLRRELESERIKTV+GSRRLADAVERQDNALAEVRRDSAQLREQRDRR DSAMLGIKLHQLRKKQAAGRLLHAL LARHRSLATALRALVVRVTNDIHLKK GAETRCRDARRRLDALRD+RETVSRLTVKACWRRHQGMVI GAAAEEEKPGGDASALVVRWCFWGWARVAQGGCT VAKKARRVEAEKELTGARELLLAADENARRAEAEHNQHLAT AL EQIKQRTAELEVARTAL AAKSTA+SARGRCIRLGAARVLKVL RNRRDRLAQTFSCWVDAGRV PVVPS EE IASLGPQ+GRR VSETCAGHRQGL QQQ DAPA SRDGFGPP ADSTT LCALS TTSGGRGAQGG HTAD+ EDKGFVVASTEDEGGGAYLDALPSV ASN SRDN RDAHT+GVN TMASNG TPAPLDISSIPSTPVAASHKRPSNQ QGTPRC SLFVGGYPS GRRSTTSLSTASSKPAAAKSNISGASNPVPVPGGSGWSAN DLPRLVLSLRAAVGEELYAVGERLLRCVEADHREIHG+ YHP PITPAEREQFHVCLEDAARGRLRRAVLTFLRVQESHRAAAVEKD G VEKTR+GRRVRMNGWTCG GG XXXX GCLRGA PKSARNAEEGQDEISSLTTGPLSTP+EKARAARVLRDRLVPLLENAADAWGRHRQPWQN PRAVGRRAATESDT RFQRRTTVSTRQ+NNPHRLRRGNGDETGLSSPRRGRLCCLDSGAGPRKFWETVAGPRL EASWNVDIKALEQQLWDLAMLVRGPDLRGH ERHQG ALNRCELLRRTLDVRVFEVLLLY RTRLIWDGIDND DFYNN S RLDVDAG++
Sbjct: 1 MFQLESEAQSMRSSPPQVVERADPAAVAEVMRLRDKVAARDEQARRAQRAAAEAQEAVGRESAINQGFQRDVDNARHRLLTVQGSLAELSEENAGLRRELESERIKTVSGSRRLADAVERQDNALAEVRRDSAQLREQRDRR--------DSAMLGIKLHQLRKKQAAGRLLHALDLARHRSLATALRALVVRVTNDIHLKK--------------------GAETRCRDARRRLDALRDTRETVSRLTVKACWRRHQGMVIAGAAAEEEKPGGDASALVVRWCFWGWARVAQGGCTVVAKKARRVEAEKELTGARELLLAADENARRAEAEHNQHLATVGALAEQIKQRTAELEVARTALDAAKSTASSARGRCIRLGAARVLKVLARNRRDRLAQTFSCWVDAGRVFPVVPSNEEVIASLGPQQGRRAVSETCAGHRQGLAQQQGDAPAESRDGFGPPKADSTTHLCALSTTTSGGRGAQGGAHTADMGEDKGFVVASTEDEGGGAYLDALPSVAASNDPSRDNSRDAHTNGVNGTMASNGNTPAPLDISSIPSTPVAASHKRPSNQHQGTPRCSSLFVGGYPSPGRRSTTSLSTASSKPAAAKSNISGASNPVPVPGGSGWSANPDLPRLVLSLRAAVGEELYAVGERLLRCVEADHREIHGKLYHPVPITPAEREQFHVCLEDAARGRLRRAVLTFLRVQESHRAAAVEKDRGNVEKTRQGRRVRMNGWTCGGGGXXXXXGGCLRGARPKSARNAEEGQDEISSLTTGPLSTPSEKARAARVLRDRLVPLLENAADAWGRHRQPWQNMPRAVGRRAATESDTSRFQRRTTVSTRQQNNPHRLRRGNGDETGLSSPRRGRLCCLDSGAGPRKFWETVAGPRLVEASWNVDIKALEQQLWDLAMLVRGPDLRGHCERHQGLALNRCELLRRTLDVRVFEVLLLYMRTRLIWDGIDNDXXXXXXXXXXXXXDFYNNDSARLDVDAGLK 961
BLAST of mRNA_Ecto-sp9_F_contig89.17080.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC54_9STRA) HSP 1 Score: 126 bits (316), Expect = 1.650e-25 Identity = 113/334 (33.83%), Postives = 173/334 (51.80%), Query Frame = 1
Query: 52 STKLRRMERELEVQMKDSLAE---SQALRE----KFQDDLDCMQQDAQRRLAEEKVKWKEHSLCAEREKADAIQQAEFLQEQLIASAHEVWIAKERIFQLESEAQSMRSSPPQVVERADPAAVAEVMRLRDKVAARDEQVRRAQRAAAEAQEAVGRESAINQGFQRDVDNARHRLLTVQGSLAELSEENAGLRRELESERIKTVAGSRRLADAVERQDNALAEVRRDSAQLREQRDRRVCIPALAQDSAMLGIKLHQLRKKQAAGRLLHALGLARHRSLATALRALVVRVTNDIHLKKQTRQQEEHASEVASLEADVQGAETRCRDARRRLDAL 1032
+ +L R+E L Q+++ L E SQA E K Q + + RR ++ K E R +A ++AE LQ+QL+ + ++ ++++R LES ++ PPQ VER DP A ++ +LRDK++ + +R QR A ++ EA+GRE A QRD+D ARH+LLT+QGSLAE + EN L RELE+ER++ VA RR A++ E ALA R + LR QRD A + +A +L +L + +AA R+L A A AL + ++ + + +E + + AE RC RRR + L
Sbjct: 5 AAQLLRLEHALAEQVQEDLEEAAISQAHHEEVVSKLQAEAEAAVSREHRRHRSKETKLHEALKRVARSRAALQREAEALQDQLVLVSAQLRLSRQRSLDLESAMGELKLRPPQQVERPDPDAAFQIAQLRDKLSGTETALRECQREARDSAEALGRERAAGLALQRDLDAARHKLLTLQGSLAEGARENGALMRELEAERVRAVAQQRRAAESEEALAAALAAARAAADGLRSQRD------AFCEAAATSAARLRRLSRAEAARRVLQACARRTAAVRAAALHRWSLNAALSAAADQRRVMEAQRRAEAEAQVDAAESAERRCLALRRRCEEL 332
BLAST of mRNA_Ecto-sp9_F_contig89.17080.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEX3_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 1.380e-13 Identity = 101/365 (27.67%), Postives = 146/365 (40.00%), Query Frame = 1
Query: 2206 LPRLVLSLRAAVGEELYAVGERLLRCVEADHRE---IHG-----RSYHPAPITPAEREQFHVCLEDAARGRLRRAVLTFLRVQESHRAAAVEK-DCGKVEKTR-RGRRVRMNGWTCGAGGGXXXXXGCLRGAGPKSARNAEEGQDEISSLTTGPLSTPAEKARAARVLRDRLVPLLENAADAWGRHRQPWQNTPRAVGRRAATESDTGRFQRRTTVSTR-------QKNNPH-------------------RLRRGNGDETGLSSPRRGRLCCL---DSGAGPRKFWETVAGPRLAEA---SWNVDIKALEQQLWDLAMLVRGPDLRGHRERHQGFALNRCELLRRTLDVRVFEVLLLYTRTRLI 3174
LP +V LR + +E+Y VGE L R VEAD RE + G R P P+ + E FH L ++A+G LR +L +LR ES R + + ++ R R R R+ PKS A S P E VL R+ +L+ W HR+ + + T + TT T Q ++P R RRG T L++ R R L D+GAGP++FW+ + P+ + + LE +W L +LVR D R +G L R E R+ LD+R++E+LLLY R L+
Sbjct: 187 LPEMVGILRKRLADEVYKVGEALFRVVEADFREPAVLTGLKKTFRKRRPKPVDVTQLEHFHKRLTESAKGSLRWLLLIYLRTYESLRELFERRAELSATDEERDRWRLSRLEP--------------------PKSPGTATS---PFKSYRAAPFDD-VEPPEVLSVLEKRITGVLDEIRRVWNSHRRAAATSMQGAAETMGTPGFDSWMEGTTTADTADQDGADGQPDDPSSFTYVPGDRAGYLHTCRHIRTRRGCAHCTQLANQERRRRLALGFIDTGAGPKEFWQNI-NPKKNDTFRGKGTPSAEKLEAHMWRLVLLVRCQD------RKKGLRLARHESQRKLLDMRIYELLLLYMRQELV 520
BLAST of mRNA_Ecto-sp9_F_contig89.17080.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDJ3_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 1.300e-9 Identity = 99/365 (27.12%), Postives = 142/365 (38.90%), Query Frame = 1
Query: 2203 DLPRLVLSLRAAVGEELYAVGERLLRCVEADHREI--------HGRSYHPAPITPAE--REQFHVCLEDAARGRLRRAVLTFLRVQESHRAAAVEKDCGKVEKTRRGRRVRMNGWTCGAGGGXXXXXGCLRGAGPKSARNAEEGQDEISSLTTGP--LSTPAEKARAA-RVLRDRLVPLLENAADAWGRHR-----QPWQNTPRAVGRRAA-----------------TESDTGRFQRRTTVSTRQKNNPHRLRRGNGDETGLSSPRRGRLC-----CLDSGAGPRKFWETVAGPRLAEASWNVDIKALEQQLWDLAMLVRGPDLRGHRERHQGFALNRCELLRRTLDVRVFEVLLLYTRTRLIW 3177
+L ++ LR E LY E L++ V+AD RE+ G AP+ RE FH+ L+D +LR L +LR E VE+ GG G R + + +AE + I L G L A +AR A ++L +RL P+LE+A W R Q PRA + A +ES + Q R V N TG++ R LD+GAGPR+FW + P + + LEQ +W L +LVR D R +G L R E +RR LD R+ E +L+ + L++
Sbjct: 664 ELSDVMSRLRLRFAEALYDAIETLMKAVDADWRELPSPMQGAARGARGRRAPLEMRRQTREGFHMLLQDLLGSKLRYWALIYLRTHEM-----------LVER----------------GGSAQGTDGTRRSSASSTEASAE--RQRIDDLVDGASDLHKKAARAREALKLLEERLDPVLEDAKLVWHNRRCSIADLDHQTAPRARSKSAGRARXXXXXXXXXXXXXXSESRKWKQQMRCPVCI-----------SNPKATGIADHRASEAANASGNFLDTGAGPREFWMAITPPLKIR---SFSLAELEQMMWRLVLLVRCQD------REKGLKLFRAEAMRRLLDSRLAEYVLVMLQKSLVY 979
BLAST of mRNA_Ecto-sp9_F_contig89.17080.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVN0_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 6.550e-8 Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 1
Query: 94 MKDSLAESQALREKFQDDLDCMQQDAQRRLAEEKV 198
MKDSLAESQALREKFQ DL+CMQQDAQRRL EEKV
Sbjct: 4 MKDSLAESQALREKFQHDLECMQQDAQRRLVEEKV 38 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig89.17080.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig89.17080.1 >prot_Ecto-sp9_F_contig89.17080.1 ID=prot_Ecto-sp9_F_contig89.17080.1|Name=mRNA_Ecto-sp9_F_contig89.17080.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=1097bp MSLTADCVSAVGNYASPSTKLRRMERELEVQMKDSLAESQALREKFQDDLback to top mRNA from alignment at Ecto-sp9_F_contig89:48417..55215+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig89.17080.1 ID=mRNA_Ecto-sp9_F_contig89.17080.1|Name=mRNA_Ecto-sp9_F_contig89.17080.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=6799bp|location=Sequence derived from alignment at Ecto-sp9_F_contig89:48417..55215+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig89:48417..55215+ >mRNA_Ecto-sp9_F_contig89.17080.1 ID=mRNA_Ecto-sp9_F_contig89.17080.1|Name=mRNA_Ecto-sp9_F_contig89.17080.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=6582bp|location=Sequence derived from alignment at Ecto-sp9_F_contig89:48417..55215+ (Ectocarpus species9 EcSCA_722f female)back to top |