mRNA_Ecto-sp9_F_contig10133.170.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10133.170.1
Unique NamemRNA_Ecto-sp9_F_contig10133.170.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10133.170.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10133contigEcto-sp9_F_contig10133:4113..4427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size316
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928207.4448512-CDS-Ecto-sp9_F_contig10133:4112..44271622928207.4448512-CDS-Ecto-sp9_F_contig10133:4112..4427Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10133 4113..4427 +
1692277795.2202327-CDS-Ecto-sp9_F_contig10133:4112..44271692277795.2202327-CDS-Ecto-sp9_F_contig10133:4112..4427Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10133 4113..4427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10133.170.1prot_Ecto-sp9_F_contig10133.170.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10133 4113..4427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10133.170.1

>prot_Ecto-sp9_F_contig10133.170.1 ID=prot_Ecto-sp9_F_contig10133.170.1|Name=mRNA_Ecto-sp9_F_contig10133.170.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=105bp
VLLRGENPPAACAPFGCCGLDRPLLPLLPLLYLLLLLLLPLLLLLLRELP
LRLLAAWWWGPFGSLSPMSPPPPPTWPVVSTSSRCFRRTPAASGEADPSP
GKRVI
back to top

mRNA from alignment at Ecto-sp9_F_contig10133:4113..4427+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10133.170.1 ID=mRNA_Ecto-sp9_F_contig10133.170.1|Name=mRNA_Ecto-sp9_F_contig10133.170.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=315bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10133:4113..4427+ (Ectocarpus species9 EcSCA_722f female)
GTGCTGCTGCGCGGAGAGAACCCTCCCGCTGCTTGTGCTCCCTTTGGTTG
CTGCGGCCTTGATCGGCCGCTACTACCATTACTACCGCTACTATATCTGC
TACTATTATTGCTGCTACCGTTGTTGTTGTTGCTGTTGCGAGAACTTCCT
CTCCGGCTTCTCGCTGCTTGGTGGTGGGGGCCATTCGGGTCGTTGTCGCC
GATGTCGCCGCCGCCGCCACCGACCTGGCCTGTGGTGTCGACTTCAAGCC
GTTGCTTTCGGAGGACCCCCGCTGCCAGCGGCGAAGCCGACCCTTCCCCC
GGAAAAAGGGTCATC
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10133:4113..4427+

>mRNA_Ecto-sp9_F_contig10133.170.1 ID=mRNA_Ecto-sp9_F_contig10133.170.1|Name=mRNA_Ecto-sp9_F_contig10133.170.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10133:4113..4427+ (Ectocarpus species9 EcSCA_722f female)
GTGCTGCTGCGCGGAGAGAACCCTCCCGCTGCTTGTGCTCCCTTTGGTTG
CTGCGGCCTTGATCGGCCGCTACTACCATTACTACCGCTACTATATCTGC
TACTATTATTGCTGCTACCGTTGTTGTTGTTGCTGTTGCGAGAACTTCCT
CTCCGGCTTCTCGCTGCTTGGTGGTGGGGGCCATTCGGGTCGTTGTCGCC
GATGTCGCCGCCGCCGCCACCGACCTGGCCTGTGGTGTCGACTTCAAGCC
GTTGCTTTCGGAGGACCCCCGCTGCCAGCGGCGAAGCCGACCCTTCCCCC
GGAAAAAGGGTCATCGTGCTGCTGCGCGGAGAGAACCCTCCCGCTGCTTG
TGCTCCCTTTGGTTGCTGCGGCCTTGATCGGCCGCTACTACCATTACTAC
CGCTACTATATCTGCTACTATTATTGCTGCTACCGTTGTTGTTGTTGCTG
TTGCGAGAACTTCCTCTCCGGCTTCTCGCTGCTTGGTGGTGGGGGCCATT
CGGGTCGTTGTCGCCGATGTCGCCGCCGCCGCCACCGACCTGGCCTGTGG
TGTCGACTTCAAGCCGTTGCTTTCGGAGGACCCCCGCTGCCAGCGGCGAA
GCCGACCCTTCCCCCGGAAAAAGGGTCATC
back to top