mRNA_Ecto-sp9_F_contig10133.169.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10133.169.1
Unique NamemRNA_Ecto-sp9_F_contig10133.169.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10133.169.1 vs.
Match: Nucleotid_trans (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G0_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 5.110e-14
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = -2 
Query:   21 ASSWSDVLERFLSENPGVDVFGMFGEGALPTAELLVP 131
            ASSWSDVLERFLSENPGVDVFGMFGEGALPTAELLVP
Sbjct:  331 ASSWSDVLERFLSENPGVDVFGMFGEGALPTAELLVP 367
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10133.169.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Nucleotid_trans5.110e-14100.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10133contigEcto-sp9_F_contig10133:859..1242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size386
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928207.4081385-CDS-Ecto-sp9_F_contig10133:858..12421622928207.4081385-CDS-Ecto-sp9_F_contig10133:858..1242Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10133 859..1242 +
1692277795.2041142-CDS-Ecto-sp9_F_contig10133:858..12421692277795.2041142-CDS-Ecto-sp9_F_contig10133:858..1242Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10133 859..1242 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10133.169.1prot_Ecto-sp9_F_contig10133.169.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10133 859..1242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10133.169.1

>prot_Ecto-sp9_F_contig10133.169.1 ID=prot_Ecto-sp9_F_contig10133.169.1|Name=mRNA_Ecto-sp9_F_contig10133.169.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=128bp
EAATGGGGTSSSAVGSAPSPNIPNTSTPGFSDRNRSSTSDHDEAGGGGGG
GDARAGGVTIAAPPALLSADDAIVVARLRGAAAGAASPSAAAIPRRGRSP
RCCATGPIEVAASAPAPPTAAVSRRSS*
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mRNA from alignment at Ecto-sp9_F_contig10133:859..1242+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10133.169.1 ID=mRNA_Ecto-sp9_F_contig10133.169.1|Name=mRNA_Ecto-sp9_F_contig10133.169.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=384bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10133:859..1242+ (Ectocarpus species9 EcSCA_722f female)
GAGGCGGCAACGGGGGGAGGAGGCACGAGCAGCTCGGCAGTCGGCAGCGC
GCCTTCCCCGAACATCCCGAACACGTCAACCCCCGGGTTTTCGGACAGGA
ACCGCTCGAGCACGTCGGACCACGATGAGGCCGGCGGCGGCGGCGGCGGT
GGCGACGCTCGTGCAGGGGGAGTGACTATTGCCGCGCCCCCGGCATTGTT
GTCGGCAGACGACGCTATTGTCGTTGCTCGCCTGCGCGGTGCTGCTGCCG
GTGCTGCTTCGCCCTCGGCAGCAGCAATTCCTCGTCGTGGCCGTTCTCCC
CGCTGCTGTGCCACCGGACCGATCGAGGTTGCTGCCTCAGCCCCAGCTCC
CCCCACCGCCGCCGTATCCCGCCGCTCTTCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10133:859..1242+

>mRNA_Ecto-sp9_F_contig10133.169.1 ID=mRNA_Ecto-sp9_F_contig10133.169.1|Name=mRNA_Ecto-sp9_F_contig10133.169.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=768bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10133:859..1242+ (Ectocarpus species9 EcSCA_722f female)
GAGGCGGCAACGGGGGGAGGAGGCACGAGCAGCTCGGCAGTCGGCAGCGC
GCCTTCCCCGAACATCCCGAACACGTCAACCCCCGGGTTTTCGGACAGGA
ACCGCTCGAGCACGTCGGACCACGATGAGGCCGGCGGCGGCGGCGGCGGT
GGCGACGCTCGTGCAGGGGGAGTGACTATTGCCGCGCCCCCGGCATTGTT
GTCGGCAGACGACGCTATTGTCGTTGCTCGCCTGCGCGGTGCTGCTGCCG
GTGCTGCTTCGCCCTCGGCAGCAGCAATTCCTCGTCGTGGCCGTTCTCCC
CGCTGCTGTGCCACCGGACCGATCGAGGTTGCTGCCTCAGCCCCAGCTCC
CCCCACCGCCGCCGTATCCCGCCGCTCTTCGTAAGAGGCGGCAACGGGGG
GAGGAGGCACGAGCAGCTCGGCAGTCGGCAGCGCGCCTTCCCCGAACATC
CCGAACACGTCAACCCCCGGGTTTTCGGACAGGAACCGCTCGAGCACGTC
GGACCACGATGAGGCCGGCGGCGGCGGCGGCGGTGGCGACGCTCGTGCAG
GGGGAGTGACTATTGCCGCGCCCCCGGCATTGTTGTCGGCAGACGACGCT
ATTGTCGTTGCTCGCCTGCGCGGTGCTGCTGCCGGTGCTGCTTCGCCCTC
GGCAGCAGCAATTCCTCGTCGTGGCCGTTCTCCCCGCTGCTGTGCCACCG
GACCGATCGAGGTTGCTGCCTCAGCCCCAGCTCCCCCCACCGCCGCCGTA
TCCCGCCGCTCTTCGTAA
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