mRNA_Ecto-sp9_F_contig1013.168.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1013.168.1
Unique NamemRNA_Ecto-sp9_F_contig1013.168.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1013.168.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 1.110e-58
Identity = 88/107 (82.24%), Postives = 91/107 (85.05%), Query Frame = 1
Query:    1 DYDGGDCCECTCGDESGDLDDSSCTDFACIDPNAPCVDD-ITEGMFEGCFNFGDGFCNDYNNNEQCGYDGGDCCECTCVVSTLWFTESSCTEFACIDPTAPCADDDD 318
            DYD GDCC+CTCG ES DL D SC DFAC+DPNAPCVDD +TEGMFE CFNFGDGFCNDYNNNEQCGYDGGDCCECTCVV   W  E  CTEFACIDPTAPC DDDD
Sbjct:   11 DYDAGDCCQCTCGIESDDLPDFSCVDFACVDPNAPCVDDDVTEGMFEDCFNFGDGFCNDYNNNEQCGYDGGDCCECTCVVD--WSAEFGCTEFACIDPTAPCVDDDD 115          
BLAST of mRNA_Ecto-sp9_F_contig1013.168.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 1.050e-54
Identity = 88/107 (82.24%), Postives = 91/107 (85.05%), Query Frame = 1
Query:    1 DYDGGDCCECTCGDESGDLDDSSCTDFACIDPNAPCVDD-ITEGMFEGCFNFGDGFCNDYNNNEQCGYDGGDCCECTCVVSTLWFTESSCTEFACIDPTAPCADDDD 318
            DYD GDCC+CTCG ES DL D SC DFAC+DPNAPCVDD +TEGMFE CFNFGDGFCNDYNNNEQCGYDGGDCCECTCVV   W  E  CTEFACIDPTAPC DDDD
Sbjct:  160 DYDAGDCCQCTCGIESDDLSDFSCVDFACVDPNAPCVDDDVTEGMFEDCFNFGDGFCNDYNNNEQCGYDGGDCCECTCVVD--WSAEFGCTEFACIDPTAPCVDDDD 264          
BLAST of mRNA_Ecto-sp9_F_contig1013.168.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX5_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 2.070e-36
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 1
Query:  130 MFEGCFNFGDGFCNDYNNNEQCGYDGGDCCECTCVVSTLWFTESSCTEFACIDPTAPCADDDD 318
            MFEGCFNFGDGFC+DYNNNEQCGYDGGDCCECTCVVSTLW TESSCTEFACIDP APCADDDD
Sbjct:    1 MFEGCFNFGDGFCDDYNNNEQCGYDGGDCCECTCVVSTLWSTESSCTEFACIDPRAPCADDDD 63          
BLAST of mRNA_Ecto-sp9_F_contig1013.168.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 1.260e-30
Identity = 67/112 (59.82%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    4 YDGGDCCECTCGDESGDLDDSSCTD--FACIDPNAPCVDD--ITEGMFEGCF--NFGDGFCNDYNNNEQCGYDGGDCCECTCVVSTLWFTESSCT-EFACIDPTAPCADDDD 318
            +DGGDCCECTC     D    S TD  FAC+DP APCVDD  IT      CF   FGDG+C+  NNNE CGYDGGDCCECTCV    W  + SC    ACIDP+APC DDDD
Sbjct:    6 FDGGDCCECTCVSVYDDDYSCSSTDSGFACVDPTAPCVDDDDITIEQALNCFPREFGDGWCDQENNNEICGYDGGDCCECTCV--NAWDDDYSCAANSACIDPSAPCVDDDD 115          
BLAST of mRNA_Ecto-sp9_F_contig1013.168.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 2.200e-30
Identity = 66/114 (57.89%), Postives = 75/114 (65.79%), Query Frame = 1
Query:    4 YDGGDCCECTCGDESGDLDDSSCTDFACIDPNAPCVDD--ITEGMFEGC---FNFGDGFCNDYNNNEQCGYDGGDCCECTCVVSTLWFTESS----CTEFACIDPTAPCADDDD 318
            YDGGDCC CTC  ES   DD  C  FACIDP A CVDD  IT  MFE C    + G+G+C++ NN E CGYDGGDCCECTC   + +  +      C EFACIDP+APC DDDD
Sbjct:  147 YDGGDCCSCTC--ESPYDDDWGCMWFACIDPEAACVDDDDITVDMFENCEYPVDIGNGWCDEANNIEACGYDGGDCCECTCEYESPYDWDDDWDYHCMEFACIDPSAPCVDDDD 258          
BLAST of mRNA_Ecto-sp9_F_contig1013.168.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 9.810e-30
Identity = 65/116 (56.03%), Postives = 78/116 (67.24%), Query Frame = 1
Query:    4 YDGGDCCECTCGDESGDLDDSSCTD----FACIDPNAPCVDD--ITEGMFEGCF--NFGDGFCNDYNNNEQCGYDGGDCCECTCVV---STLWFTESSCTEFACIDPTAPCADDDD 318
            YDGGDCCECTC +  GD D+  C+     FACIDP+APCVDD  IT  + + C   + G+G+C++ NNNE CGYD GDCCECTCV       W+  S  + FACIDP APC DDDD
Sbjct:   45 YDGGDCCECTCQNPWGDDDEWFCSKDGYGFACIDPDAPCVDDDDITIEIAQNCVTSDLGNGYCDEDNNNEICGYDFGDCCECTCVSPWDDDDWYCSSDGSGFACIDPAAPCVDDDD 160          
BLAST of mRNA_Ecto-sp9_F_contig1013.168.1 vs.
Match: LNR (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 2.760e-29
Identity = 61/108 (56.48%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    4 YDGGDCCECTCGDESGDLDDSSCTDFACIDPNAPCV--DDITEGMFEGC---FNFGDGFCNDYNNNEQCGYDGGDCCECTCVVSTLWFTESSCTE---FACIDPTAPC 303
            YDGGDCCECTC    GD DD  C  F+CIDPNAPCV  DDIT  MF+ C      GDG+C+  NN E CGYDGGDCC CTC   ++W  + +C E   F C DP+A C
Sbjct:   10 YDGGDCCECTC---EGDDDDYKCMQFSCIDPNAPCVNDDDITVDMFDNCGYVSGIGDGWCDSNNNKEACGYDGGDCCSCTC--ESVWDDDYTCGEDAFFDCKDPSAAC 112          
BLAST of mRNA_Ecto-sp9_F_contig1013.168.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 5.010e-29
Identity = 66/116 (56.90%), Postives = 77/116 (66.38%), Query Frame = 1
Query:    4 YDGGDCCECTC---GDESGDLDDSSCTD---FACIDPNAPCV--DDITEGMFEGC----FNFGDGFCNDYNNNEQCGYDGGDCCECTCVVSTLWFTESSCTEFACIDPTAPCADDD 315
            YDGGDCC CTC    D+SGD D S C++   FACIDP+APCV  DDIT  M + C     NFGDG+C+D NNN++CGYD GDCC CTCV  T    E     F C+DP+A C DDD
Sbjct:  266 YDGGDCCSCTCQVPDDDSGD-DGSLCSESTVFACIDPDAPCVNDDDITVDMMDTCGGHPINFGDGWCDDDNNNKECGYDSGDCCSCTCVDGTY---ECGIVGFDCVDPSAECVDDD 377          
BLAST of mRNA_Ecto-sp9_F_contig1013.168.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 2.860e-28
Identity = 65/114 (57.02%), Postives = 76/114 (66.67%), Query Frame = 1
Query:    4 YDGGDCCECTCGDESGDLDDSSCTD----FACIDPNAPCVDD--ITEGMFEGC--FNFGDGFCNDYNNNEQCGYDGGDCCECTCVVSTLWFTESSCTEF-ACIDPTAPCADDDD 318
            YDGGDCCECTC +  GD DD  C+     FACIDP+A CVDD  IT  + + C  +  GDG+C+  NNNE CGYDGGDCCECTCV       + +C  + ACIDP APC DDDD
Sbjct:   21 YDGGDCCECTCVNPWGDDDDWVCSKDGSGFACIDPDASCVDDDDITVEIAQNCDTWGLGDGWCDQDNNNEICGYDGGDCCECTCVSPWDDDDDWACRNYNACIDPDAPCVDDDD 134          
BLAST of mRNA_Ecto-sp9_F_contig1013.168.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 7.090e-28
Identity = 64/111 (57.66%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    4 YDGGDCCECTCGDESGDLDDS-SCTDFACIDPNAPCV--DDITEGMFEGC---FNFGDGFCNDYNNNEQCGYDGGDCCECTCVVSTLWFTESSCTEFACIDPTAPCADDDD 318
            YDGGDCC CTC     D+DD      FACIDP A CV  DDIT  MF  C    N GDG+C+  NNNE CGYDGGDCCECTC        +  C EF+CIDP+APC +DDD
Sbjct:  373 YDGGDCCACTC---QNDVDDDWXXXXFACIDPEAACVNDDDITVDMFVNCEYPVNVGDGWCDQGNNNEACGYDGGDCCECTCENERD--EDYRCMEFSCIDPSAPCVNDDD 478          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1013.168.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.110e-5882.24protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.050e-5482.24protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.070e-3695.24protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.260e-3059.82protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.200e-3057.89protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.810e-3056.03protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
LNR2.760e-2956.48domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized5.010e-2956.90protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.860e-2857.02protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.090e-2857.66protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1013contigEcto-sp9_F_contig1013:26445..27169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue6.2e-14
Seed eggNOG ortholog2880.D8LSC0
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928207.3538337-CDS-Ecto-sp9_F_contig1013:26444..266401622928207.3538337-CDS-Ecto-sp9_F_contig1013:26444..26640Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1013 26445..26640 +
1692277795.1818423-CDS-Ecto-sp9_F_contig1013:26444..266401692277795.1818423-CDS-Ecto-sp9_F_contig1013:26444..26640Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1013 26445..26640 +
1622928207.3658562-CDS-Ecto-sp9_F_contig1013:27047..271691622928207.3658562-CDS-Ecto-sp9_F_contig1013:27047..27169Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1013 27048..27169 +
1692277795.1931767-CDS-Ecto-sp9_F_contig1013:27047..271691692277795.1931767-CDS-Ecto-sp9_F_contig1013:27047..27169Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1013 27048..27169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1013.168.1prot_Ecto-sp9_F_contig1013.168.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1013 26445..27169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1013.168.1

>prot_Ecto-sp9_F_contig1013.168.1 ID=prot_Ecto-sp9_F_contig1013.168.1|Name=mRNA_Ecto-sp9_F_contig1013.168.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=106bp
DYDGGDCCECTCGDESGDLDDSSCTDFACIDPNAPCVDDITEGMFEGCFN
FGDGFCNDYNNNEQCGYDGGDCCECTCVVSTLWFTESSCTEFACIDPTAP
CADDDD
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mRNA from alignment at Ecto-sp9_F_contig1013:26445..27169+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1013.168.1 ID=mRNA_Ecto-sp9_F_contig1013.168.1|Name=mRNA_Ecto-sp9_F_contig1013.168.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=725bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1013:26445..27169+ (Ectocarpus species9 EcSCA_722f female)
GATTATGATGGCGGCGACTGCTGCGAGTGCACGTGTGGGGATGAGTCTGG TGACCTTGATGACTCTTCCTGCACGGATTTCGCCTGCATTGACCCGAACG CACCGTGTGTTGACGACATCACCGAGGGCATGTTCGAGGGCTGCTTTAAC TTCGGCGATGGATTCTGCAACGACTACAACAACAATGAACAATGCGGTGC GCCAGAAAATGATTAGCCACGTTCAAATATTTCTATCCCTGAAGTCGATT GAACGCGGGAAGGACAAGGCGAGGGGTAGTTCTCGGCGCTACAAGTCCGA GGCATCGGGTTGTACTTCATGGGATCTTTATCCCTGTGGATCTAGGGCAG TGTACCCTATAAATCCCGAATGACAGGCCAACCTTGTTCTGACGCCTTTC CTTTTGTCAGGTTACTGCGTTAGGAACACAAGCAGCACAATCACCGCGCA TTTGATTCATATTGCTCAACCTTCTATGTACTTCTAGCACGCGAAGTGCA CTTCTCGCCCATTCAACGGACACAAAGTGCGTGGCTACAGACGTGATGCC CGAAGATTGACTGCCCTTCGTTTCTGATTGTTTTTTCCTTACCTGCTCCT CAGGCTATGACGGTGGCGACTGCTGCGAGTGTACCTGTGTGGTTAGCACT TTGTGGTTCACTGAGTCCAGCTGCACTGAGTTCGCCTGCATTGACCCAAC GGCTCCATGCGCTGACGACGACGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1013:26445..27169+

>mRNA_Ecto-sp9_F_contig1013.168.1 ID=mRNA_Ecto-sp9_F_contig1013.168.1|Name=mRNA_Ecto-sp9_F_contig1013.168.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1013:26445..27169+ (Ectocarpus species9 EcSCA_722f female)
GATTATGATGGCGGCGACTGCTGCGAGTGCACGTGTGGGGATGAGTCTGG
TGACCTTGATGACTCTTCCTGCACGGATTTCGCCTGCATTGACCCGAACG
CACCGTGTGTTGACGACATCACCGAGGGCATGTTCGAGGGCTGCTTTAAC
TTCGGCGATGGATTCTGCAACGACTACAACAACAATGAACAATGCGGATT
ATGATGGCGGCGACTGCTGCGAGTGCACGTGTGGGGATGAGTCTGGTGAC
CTTGATGACTCTTCCTGCACGGATTTCGCCTGCATTGACCCGAACGCACC
GTGTGTTGACGACATCACCGAGGGCATGTTCGAGGGCTGCTTTAACTTCG
GCGATGGATTCTGCAACGACTACAACAACAATGAACAATGCGGCTATGAC
GGTGGCGACTGCTGCGAGTGTACCTGTGTGGTTAGCACTTTGTGGTTCAC
TGAGTCCAGCTGCACTGAGTTCGCCTGCATTGACCCAACGGCTCCATGCG
CTGACGACGACGACGCTATGACGGTGGCGACTGCTGCGAGTGTACCTGTG
TGGTTAGCACTTTGTGGTTCACTGAGTCCAGCTGCACTGAGTTCGCCTGC
ATTGACCCAACGGCTCCATGCGCTGACGACGACGAC
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