mRNA_Ecto-sp9_F_contig10123.163.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10123.163.1
Unique NamemRNA_Ecto-sp9_F_contig10123.163.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10123.163.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV59_ECTSI)

HSP 1 Score: 882 bits (2279), Expect = 1.040e-315
Identity = 476/487 (97.74%), Postives = 478/487 (98.15%), Query Frame = 1 
Query:    4 MKALIAFLGARVEHLASLKHVLPSLLGMADNDKDEWVQVVSGLVRQKLLPRDEDDSTNVGDEAKTSQSDFVLRKTVREVLERAKQNMSERAGNGKQRVVGGSTIGSNGDNRRMLEAPYFGPLEERYVSRKQQPRKQEFANAHFSVKYDFVSEFSEDLASNVGGTLNTSSSPTGGGASVAAAALASRVGQGGLLKTPGSFAPAPTPAAPNLAQARRVSLAAVVDPSAGSDGLRRTSKPLALSRNYVGLQHGSGRTSSGVGGARGTRGGGGAGPGKAGLMMINVDELQAIHAEKQSAREKAKGKPGRKKAKLEGGGEQSTAGMEPGTGASATGTQQVVANATDVGNTDGQLPEGASGEGKKAKPKAPAKPSATADGPMPVPQQGEIEAVAAMMVLGVAGGGEDAETSYLPEALTKLLENANSLRPEGKAKLESFFQKKMPEGSQQERVKYHEEVSPGADGEMMRVTSYIRLDYETWVWDRVHKKKRVKS 1464
            MKALIAFLGAR EHLASL HVLPSLLGMAD+DKDEWVQVVSGLVRQKLLPRDEDDST+VGDEAKTSQSDFVLRKTVREVLERAKQNMSERAGNGKQRVVGGSTIG N D RRM EAPYFGPLEERYVSRKQQPRKQEFANAHFSVKYDFV EFSEDLASNVGGT NTSSSPTGGGASVAAAALASRVGQGGLLKTPGSFAPAPTPAAPNLAQARRVSLAAVVDPSAGSDGLRRTSKPLALSRNYVGLQHGSGRTSSGVGGARGTRGGGGA PGKAGLMMINVDELQAIHAEKQSAREKAKGKPGRKKAKLEGGGEQSTAGMEPGTGASATGTQQVVANATDVGNTDGQLPEGASGEGKKAKPKAPAKPSATADGPMPVPQQGEIEAVAAMMVLGVAGGGEDAETSYLPEALTKLLENANSLRPEGKAKLESFFQKKMPEGSQQERVKYHEEVSPGADGEMMRVTSYIRLDYETWVWDRVHKKKRVKS
Sbjct:    1 MKALIAFLGARKEHLASLNHVLPSLLGMADSDKDEWVQVVSGLVRQKLLPRDEDDSTSVGDEAKTSQSDFVLRKTVREVLERAKQNMSERAGNGKQRVVGGSTIGGNRDTRRMREAPYFGPLEERYVSRKQQPRKQEFANAHFSVKYDFVGEFSEDLASNVGGTSNTSSSPTGGGASVAAAALASRVGQGGLLKTPGSFAPAPTPAAPNLAQARRVSLAAVVDPSAGSDGLRRTSKPLALSRNYVGLQHGSGRTSSGVGGARGTRGGGGASPGKAGLMMINVDELQAIHAEKQSAREKAKGKPGRKKAKLEGGGEQSTAGMEPGTGASATGTQQVVANATDVGNTDGQLPEGASGEGKKAKPKAPAKPSATADGPMPVPQQGEIEAVAAMMVLGVAGGGEDAETSYLPEALTKLLENANSLRPEGKAKLESFFQKKMPEGSQQERVKYHEEVSPGADGEMMRVTSYIRLDYETWVWDRVHKKKRVKS 487
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10123.163.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.040e-31597.74protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV59... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10123contigEcto-sp9_F_contig10123:2165..4798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_007450.1
Exons1
Model size2634
Cds size1464
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10123.163.1prot_Ecto-sp9_F_contig10123.163.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10123 2168..3631 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928206.6983685-UTR-Ecto-sp9_F_contig10123:2164..21671622928206.6983685-UTR-Ecto-sp9_F_contig10123:2164..2167Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10123 2165..2167 +
1692277794.8790238-UTR-Ecto-sp9_F_contig10123:2164..21671692277794.8790238-UTR-Ecto-sp9_F_contig10123:2164..2167Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10123 2165..2167 +
1622928206.7221975-UTR-Ecto-sp9_F_contig10123:3631..47981622928206.7221975-UTR-Ecto-sp9_F_contig10123:3631..4798Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10123 3632..4798 +
1692277794.8953795-UTR-Ecto-sp9_F_contig10123:3631..47981692277794.8953795-UTR-Ecto-sp9_F_contig10123:3631..4798Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10123 3632..4798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928206.7112966-CDS-Ecto-sp9_F_contig10123:2167..36311622928206.7112966-CDS-Ecto-sp9_F_contig10123:2167..3631Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10123 2168..3631 +
1692277794.8870988-CDS-Ecto-sp9_F_contig10123:2167..36311692277794.8870988-CDS-Ecto-sp9_F_contig10123:2167..3631Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10123 2168..3631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10123.163.1

>prot_Ecto-sp9_F_contig10123.163.1 ID=prot_Ecto-sp9_F_contig10123.163.1|Name=mRNA_Ecto-sp9_F_contig10123.163.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=488bp
MKALIAFLGARVEHLASLKHVLPSLLGMADNDKDEWVQVVSGLVRQKLLP
RDEDDSTNVGDEAKTSQSDFVLRKTVREVLERAKQNMSERAGNGKQRVVG
GSTIGSNGDNRRMLEAPYFGPLEERYVSRKQQPRKQEFANAHFSVKYDFV
SEFSEDLASNVGGTLNTSSSPTGGGASVAAAALASRVGQGGLLKTPGSFA
PAPTPAAPNLAQARRVSLAAVVDPSAGSDGLRRTSKPLALSRNYVGLQHG
SGRTSSGVGGARGTRGGGGAGPGKAGLMMINVDELQAIHAEKQSAREKAK
GKPGRKKAKLEGGGEQSTAGMEPGTGASATGTQQVVANATDVGNTDGQLP
EGASGEGKKAKPKAPAKPSATADGPMPVPQQGEIEAVAAMMVLGVAGGGE
DAETSYLPEALTKLLENANSLRPEGKAKLESFFQKKMPEGSQQERVKYHE
EVSPGADGEMMRVTSYIRLDYETWVWDRVHKKKRVKS*
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mRNA from alignment at Ecto-sp9_F_contig10123:2165..4798+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10123.163.1 ID=mRNA_Ecto-sp9_F_contig10123.163.1|Name=mRNA_Ecto-sp9_F_contig10123.163.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2634bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10123:2165..4798+ (Ectocarpus species9 EcSCA_722f female)
CAGATGAAAGCCCTCATTGCCTTCCTGGGGGCCCGAGTGGAGCATCTTGC
GTCCCTTAAGCATGTTCTACCGTCGCTTTTGGGGATGGCGGATAACGATA
AAGACGAGTGGGTCCAGGTAGTGTCCGGGCTTGTACGCCAAAAACTCTTA
CCGAGGGACGAGGATGATTCGACCAACGTCGGCGATGAGGCAAAGACTTC
ACAGAGTGATTTCGTCTTGCGCAAGACGGTCAGGGAAGTCCTCGAGCGGG
CAAAGCAGAATATGTCGGAGCGGGCAGGCAACGGGAAACAGCGGGTCGTG
GGTGGCAGTACCATCGGCAGCAACGGCGATAATCGGCGCATGCTCGAGGC
ACCTTACTTCGGTCCGTTGGAGGAGAGGTACGTCAGCCGTAAACAGCAGC
CTCGAAAGCAGGAGTTCGCCAATGCGCACTTCAGCGTCAAGTACGATTTT
GTCAGCGAATTCTCCGAAGACCTCGCTTCCAACGTTGGTGGTACCTTGAA
CACATCTTCTTCTCCAACGGGAGGGGGTGCGTCTGTCGCTGCGGCGGCGC
TCGCGTCAAGAGTTGGCCAGGGAGGGTTGTTGAAGACCCCGGGCTCTTTC
GCTCCCGCCCCCACTCCGGCGGCACCGAACCTTGCGCAAGCTCGAAGGGT
TTCGCTTGCTGCTGTGGTGGATCCATCCGCGGGCTCCGACGGCCTCCGCA
GGACTAGCAAGCCGTTGGCATTGTCGCGGAACTACGTGGGGCTCCAGCAT
GGTTCCGGGCGGACAAGTTCAGGTGTTGGGGGCGCCCGCGGAACGCGGGG
AGGGGGCGGGGCGGGCCCCGGCAAAGCAGGGTTGATGATGATCAATGTGG
ACGAACTGCAGGCAATTCACGCTGAGAAACAGTCTGCGAGGGAGAAGGCA
AAAGGCAAACCGGGTAGGAAGAAGGCCAAACTTGAAGGGGGGGGGGAACA
AAGTACGGCCGGCATGGAGCCTGGTACCGGGGCGTCAGCAACTGGAACCC
AACAGGTTGTTGCTAACGCCACGGACGTTGGCAACACGGATGGGCAGTTA
CCGGAGGGAGCAAGCGGCGAGGGGAAGAAGGCAAAGCCGAAGGCACCAGC
CAAGCCTTCGGCAACGGCAGATGGTCCGATGCCCGTACCGCAGCAGGGCG
AGATCGAGGCAGTCGCAGCCATGATGGTTCTTGGTGTCGCTGGGGGAGGT
GAAGATGCGGAGACCTCTTACCTGCCCGAAGCATTGACGAAGCTCTTGGA
AAACGCCAATTCGCTGCGACCGGAGGGTAAGGCCAAGCTGGAGAGTTTTT
TCCAGAAGAAAATGCCAGAAGGGTCGCAGCAGGAGAGGGTCAAGTACCAC
GAGGAGGTTAGCCCTGGGGCGGACGGGGAAATGATGCGAGTGACAAGCTA
CATTCGCCTGGATTATGAGACCTGGGTGTGGGACAGGGTTCACAAGAAGA
AGCGTGTCAAATCGTGACGTAGTGAGTAGAGTGGGGAGTTGCACAGATGG
GCCCCATGTACATATAACGGTGAACCTGTTCGTAGAGTCTCAATTTCGAC
TTGGCATGATTTATTGGGTGGTCGCGGATATCTGATTGCGGCGCCAGGAG
AAAGAGGTCGGCAAAACACACTCAGCCATCACTTAGGTGTGTCCTTTCAG
CTGTCGGCCATCCATGTGATACACTTCGAAGTATTTTTTGTTCTGATGTG
TGACTGATTTGCTGCTCCACACAGGTTATTCGTCGTAGCTTCTGTATCCC
TCAGTTGCAACGAATGGGCATGTGTTGCCATGTCCTCTTCAATGCCGTGA
GTTGTGCAGCACGTCGAGCGTGAAGGGAGGTCCTGTGTCTACTCAGTGGA
GATTGAGGCATGCCCACAACATACACGGGTGTTAGAAGGGCGCACCAAAT
CACCCGCCTCTCCCCGGTCGATCGTGCCAGACGGACGCGAGATTTTTTTT
GTGGACTGACCGCACCCACCCGCCACCAATAAGTGTGAATAAATACAATG
TTTGGAAACCGGAACGGTATTGGACGAAAAATCGTTGTAAGGAGGCACAG
CTATCATCCTGTTTGAACCCACCCTTGAACACAGCGACGCGTGGTGGTGT
AGACAGAGAGAGTATATATAATGTACAAACTGCTTGTTTCCTTTCGTGCT
TTTTGCGTGCAGGCGGTGTGTCCGCTGTGAAGATCAATAATAATGTGTGA
CCGGATTTTTTACGCTATGGTCTGCCCTGTCGTATCCTAGATATACTACA
GCAGTAGTGGTACGGCTGGGAGCGATGCTACGACAATGAGCGTAGAATGG
GCGTCACGTCTATTTTATTTTTGTCTGCGTAAACCCTTTCGGAAAGTGAC
AAAAGCGCAGTGCAGGTATGCACAATATAAGAGGGTAGAATGAAGTACTG
GCAAGAAAAGGTAGGTACTCGGAACGTGGCGATTTTTGCGACAAAGGTTT
TCACAGGCTTTCTCTGTGCGCGGGAAGAAATTCAAGGCACGGCTTGTAGT
AAAATCTAAAATCAAATCAGACTGACTGGCGCTCGGGCCAAATCAAGAAT
GAGAGCTGTTGGTGCAATTGTTGTTGTTGTTGTTGTTGTTGTCTTCACAT
TCAAAACCGTTCCGATCTCTCTCTACCCAGTACC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10123:2165..4798+

>mRNA_Ecto-sp9_F_contig10123.163.1 ID=mRNA_Ecto-sp9_F_contig10123.163.1|Name=mRNA_Ecto-sp9_F_contig10123.163.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2928bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10123:2165..4798+ (Ectocarpus species9 EcSCA_722f female)
ATGAAAGCCCTCATTGCCTTCCTGGGGGCCCGAGTGGAGCATCTTGCGTC
CCTTAAGCATGTTCTACCGTCGCTTTTGGGGATGGCGGATAACGATAAAG
ACGAGTGGGTCCAGGTAGTGTCCGGGCTTGTACGCCAAAAACTCTTACCG
AGGGACGAGGATGATTCGACCAACGTCGGCGATGAGGCAAAGACTTCACA
GAGTGATTTCGTCTTGCGCAAGACGGTCAGGGAAGTCCTCGAGCGGGCAA
AGCAGAATATGTCGGAGCGGGCAGGCAACGGGAAACAGCGGGTCGTGGGT
GGCAGTACCATCGGCAGCAACGGCGATAATCGGCGCATGCTCGAGGCACC
TTACTTCGGTCCGTTGGAGGAGAGGTACGTCAGCCGTAAACAGCAGCCTC
GAAAGCAGGAGTTCGCCAATGCGCACTTCAGCGTCAAGTACGATTTTGTC
AGCGAATTCTCCGAAGACCTCGCTTCCAACGTTGGTGGTACCTTGAACAC
ATCTTCTTCTCCAACGGGAGGGGGTGCGTCTGTCGCTGCGGCGGCGCTCG
CGTCAAGAGTTGGCCAGGGAGGGTTGTTGAAGACCCCGGGCTCTTTCGCT
CCCGCCCCCACTCCGGCGGCACCGAACCTTGCGCAAGCTCGAAGGGTTTC
GCTTGCTGCTGTGGTGGATCCATCCGCGGGCTCCGACGGCCTCCGCAGGA
CTAGCAAGCCGTTGGCATTGTCGCGGAACTACGTGGGGCTCCAGCATGGT
TCCGGGCGGACAAGTTCAGGTGTTGGGGGCGCCCGCGGAACGCGGGGAGG
GGGCGGGGCGGGCCCCGGCAAAGCAGGGTTGATGATGATCAATGTGGACG
AACTGCAGGCAATTCACGCTGAGAAACAGTCTGCGAGGGAGAAGGCAAAA
GGCAAACCGGGTAGGAAGAAGGCCAAACTTGAAGGGGGGGGGGAACAAAG
TACGGCCGGCATGGAGCCTGGTACCGGGGCGTCAGCAACTGGAACCCAAC
AGGTTGTTGCTAACGCCACGGACGTTGGCAACACGGATGGGCAGTTACCG
GAGGGAGCAAGCGGCGAGGGGAAGAAGGCAAAGCCGAAGGCACCAGCCAA
GCCTTCGGCAACGGCAGATGGTCCGATGCCCGTACCGCAGCAGGGCGAGA
TCGAGGCAGTCGCAGCCATGATGGTTCTTGGTGTCGCTGGGGGAGGTGAA
GATGCGGAGACCTCTTACCTGCCCGAAGCATTGACGAAGCTCTTGGAAAA
CGCCAATTCGCTGCGACCGGAGGGTAAGGCCAAGCTGGAGAGTTTTTTCC
AGAAGAAAATGCCAGAAGGGTCGCAGCAGGAGAGGGTCAAGTACCACGAG
GAGGTTAGCCCTGGGGCGGACGGGGAAATGATGCGAGTGACAAGCTACAT
TCGCCTGGATTATGAGACCTGGGTGTGGGACAGGGTTCACAAGAAGAAGC
GTGTCAAATCGTGAATGAAAGCCCTCATTGCCTTCCTGGGGGCCCGAGTG
GAGCATCTTGCGTCCCTTAAGCATGTTCTACCGTCGCTTTTGGGGATGGC
GGATAACGATAAAGACGAGTGGGTCCAGGTAGTGTCCGGGCTTGTACGCC
AAAAACTCTTACCGAGGGACGAGGATGATTCGACCAACGTCGGCGATGAG
GCAAAGACTTCACAGAGTGATTTCGTCTTGCGCAAGACGGTCAGGGAAGT
CCTCGAGCGGGCAAAGCAGAATATGTCGGAGCGGGCAGGCAACGGGAAAC
AGCGGGTCGTGGGTGGCAGTACCATCGGCAGCAACGGCGATAATCGGCGC
ATGCTCGAGGCACCTTACTTCGGTCCGTTGGAGGAGAGGTACGTCAGCCG
TAAACAGCAGCCTCGAAAGCAGGAGTTCGCCAATGCGCACTTCAGCGTCA
AGTACGATTTTGTCAGCGAATTCTCCGAAGACCTCGCTTCCAACGTTGGT
GGTACCTTGAACACATCTTCTTCTCCAACGGGAGGGGGTGCGTCTGTCGC
TGCGGCGGCGCTCGCGTCAAGAGTTGGCCAGGGAGGGTTGTTGAAGACCC
CGGGCTCTTTCGCTCCCGCCCCCACTCCGGCGGCACCGAACCTTGCGCAA
GCTCGAAGGGTTTCGCTTGCTGCTGTGGTGGATCCATCCGCGGGCTCCGA
CGGCCTCCGCAGGACTAGCAAGCCGTTGGCATTGTCGCGGAACTACGTGG
GGCTCCAGCATGGTTCCGGGCGGACAAGTTCAGGTGTTGGGGGCGCCCGC
GGAACGCGGGGAGGGGGCGGGGCGGGCCCCGGCAAAGCAGGGTTGATGAT
GATCAATGTGGACGAACTGCAGGCAATTCACGCTGAGAAACAGTCTGCGA
GGGAGAAGGCAAAAGGCAAACCGGGTAGGAAGAAGGCCAAACTTGAAGGG
GGGGGGGAACAAAGTACGGCCGGCATGGAGCCTGGTACCGGGGCGTCAGC
AACTGGAACCCAACAGGTTGTTGCTAACGCCACGGACGTTGGCAACACGG
ATGGGCAGTTACCGGAGGGAGCAAGCGGCGAGGGGAAGAAGGCAAAGCCG
AAGGCACCAGCCAAGCCTTCGGCAACGGCAGATGGTCCGATGCCCGTACC
GCAGCAGGGCGAGATCGAGGCAGTCGCAGCCATGATGGTTCTTGGTGTCG
CTGGGGGAGGTGAAGATGCGGAGACCTCTTACCTGCCCGAAGCATTGACG
AAGCTCTTGGAAAACGCCAATTCGCTGCGACCGGAGGGTAAGGCCAAGCT
GGAGAGTTTTTTCCAGAAGAAAATGCCAGAAGGGTCGCAGCAGGAGAGGG
TCAAGTACCACGAGGAGGTTAGCCCTGGGGCGGACGGGGAAATGATGCGA
GTGACAAGCTACATTCGCCTGGATTATGAGACCTGGGTGTGGGACAGGGT
TCACAAGAAGAAGCGTGTCAAATCGTGA
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