mRNA_Ecto-sp9_F_contig1012.160.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1012.160.1
Unique NamemRNA_Ecto-sp9_F_contig1012.160.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1012.160.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ8_ECTSI)

HSP 1 Score: 353 bits (905), Expect = 4.650e-112
Identity = 274/330 (83.03%), Postives = 274/330 (83.03%), Query Frame = 1 
Query:   88 MEMACPAETNRALGMRPMDVAKLSNFDPSGKATLILACAKAAWARRGVGGGGQACGGGSPQGEAAADFGTTSDQAGESCRPKDGGDEGGG-DADASSTAGWAAAXXXXXXXXXXXXTTLFASPARPRSA-MSVLSTSVLAVSRPGSPTAAAAPPTVAGEGGXXXXXXXXXXXXA-KQRKSGDRTGL-SFWRWGGKPRTGDEGGSXXXXXSAGVEEGCGGWGTGMVRVPSFEPPVKGSGANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPVAAAXXXXXXXXXXXXXXXXXXXXXXXXSSGRKRSVDGEVGGTLGKKGGGGVVNPGKE 1065
            MEMACPAETNRALGMRPMDVAKLSNFDPSGKATLILACAKAAWARRGVG GGQA GGGSPQGEAAADFGTTSDQAGESCRPKDGGDEGGG DADASSTAGWAA XXXXXXX     TTLFASPARPRS  MSVLSTSVLAVSRPGSPTAA           XXXXXXXXXX  A KQR SGDRT L SFWRWGGKPRTGDEGGSXXXXX AGVEEGCGGWGTGMVRVPSFEP VKGSGANXXXXXXXXXXXXXXXXXXXXXXXXXX    TPVAA XXX                     SSGRKRSVDGEVGGTLGKKGGGGVVNPGKE
Sbjct:    1 MEMACPAETNRALGMRPMDVAKLSNFDPSGKATLILACAKAAWARRGVGAGGQARGGGSPQGEAAADFGTTSDQAGESCRPKDGGDEGGGGDADASSTAGWAAXXXXXXXXPASPATTLFASPARPRSGTMSVLSTSVLAVSRPGSPTAAXXXXXXXXXXXXXXXXXXXXXEGAAKQRISGDRTALLSFWRWGGKPRTGDEGGSXXXXXXAGVEEGCGGWGTGMVRVPSFEPSVKGSGANXXXXXXXXXXXXXXXXXXXXXXXXXXPAFETPVAAXXXXSASNSGECLGGGSSSR-----SSGRKRSVDGEVGGTLGKKGGGGVVNPGKE 325
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1012.160.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU0_9PHAE)

HSP 1 Score: 351 bits (901), Expect = 2.310e-108
Identity = 213/226 (94.25%), Postives = 218/226 (96.46%), Query Frame = 1 
Query:    1 SAQYVALLFDSDHNRISWRVACELYAKPFMEMACPAETNRALGMRPMDVAKLSNFDPSGKATLILACAKAAWARRGVGGGGQACGGGSPQGEAAADFGTTSDQAGESCRPKDGGDEGGGDADASSTAGWAAAXXXXXXXXXXXXTTLFASPARPRSAMSVLSTSVLAVSRPGSPTAAAAPPTVAGEGGXXXXXXXXXXXXAKQRKSGDRTGLSFWRWGGKPRTGDE 678
            + +YVALLFDSDHNRI WRVACELYAKPFMEMACPAET RALG+RPMDVAKLSNFDPSGKATLILACAKAAWARRGVG GGQACGGGSPQGEAAADFGTT DQAGESCRPKDGGDEGGGDADASSTAGWAAAXXXXXXXXXXXXTTLFASPARPRSAMSVLSTSVLAVSRPGSPT AAAPP +AGEGGXXXXXXXXXXXXAKQR SGDRTGLSFWRWGGKPR+GDE
Sbjct:  238 TTKYVALLFDSDHNRIGWRVACELYAKPFMEMACPAETKRALGIRPMDVAKLSNFDPSGKATLILACAKAAWARRGVGVGGQACGGGSPQGEAAADFGTTGDQAGESCRPKDGGDEGGGDADASSTAGWAAAXXXXXXXXXXXXTTLFASPARPRSAMSVLSTSVLAVSRPGSPTLAAAPPALAGEGGXXXXXXXXXXXXAKQRISGDRTGLSFWRWGGKPRSGDE 463
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1012.160.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.650e-11283.03protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.310e-10894.25protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1012contigEcto-sp9_F_contig1012:87..3037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-05_003000.1
Exons2
Model size2380
Cds size981
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1012.160.1prot_Ecto-sp9_F_contig1012.160.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1012 174..1725 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928206.403241-UTR-Ecto-sp9_F_contig1012:86..1731622928206.403241-UTR-Ecto-sp9_F_contig1012:86..173Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1012 87..173 +
1692277794.7262871-UTR-Ecto-sp9_F_contig1012:86..1731692277794.7262871-UTR-Ecto-sp9_F_contig1012:86..173Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1012 87..173 +
1622928206.4459448-UTR-Ecto-sp9_F_contig1012:1725..30371622928206.4459448-UTR-Ecto-sp9_F_contig1012:1725..3037Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1012 1726..3037 +
1692277794.7525547-UTR-Ecto-sp9_F_contig1012:1725..30371692277794.7525547-UTR-Ecto-sp9_F_contig1012:1725..3037Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1012 1726..3037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928206.4195142-CDS-Ecto-sp9_F_contig1012:173..1991622928206.4195142-CDS-Ecto-sp9_F_contig1012:173..199Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1012 174..199 +
1692277794.7356262-CDS-Ecto-sp9_F_contig1012:173..1991692277794.7356262-CDS-Ecto-sp9_F_contig1012:173..199Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1012 174..199 +
1622928206.4302652-CDS-Ecto-sp9_F_contig1012:770..17251622928206.4302652-CDS-Ecto-sp9_F_contig1012:770..1725Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1012 771..1725 +
1692277794.7444117-CDS-Ecto-sp9_F_contig1012:770..17251692277794.7444117-CDS-Ecto-sp9_F_contig1012:770..1725Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1012 771..1725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1012.160.1

>prot_Ecto-sp9_F_contig1012.160.1 ID=prot_Ecto-sp9_F_contig1012.160.1|Name=mRNA_Ecto-sp9_F_contig1012.160.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=327bp
MEMACPAETNRALGMRPMDVAKLSNFDPSGKATLILACAKAAWARRGVGG
GGQACGGGSPQGEAAADFGTTSDQAGESCRPKDGGDEGGGDADASSTAGW
AAAAAAAGAAPASPATTLFASPARPRSAMSVLSTSVLAVSRPGSPTAAAA
PPTVAGEGGAAEGEAAAAEGAAKQRKSGDRTGLSFWRWGGKPRTGDEGGS
GGGGGSAGVEEGCGGWGTGMVRVPSFEPPVKGSGANGGGGGGGGGGGVLR
GGVERGSGVDRAPAFETPVAAAAAAAAAASSASNSGECLGGGSSSRSSGR
KRSVDGEVGGTLGKKGGGGVVNPGKE*
back to top

mRNA from alignment at Ecto-sp9_F_contig1012:87..3037+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1012.160.1 ID=mRNA_Ecto-sp9_F_contig1012.160.1|Name=mRNA_Ecto-sp9_F_contig1012.160.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2951bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1012:87..3037+ (Ectocarpus species9 EcSCA_722f female)
TCCGCACAGTACGTGGCCCTGCTGTTTGATAGCGACCACAACCGAATAAG
CTGGCGCGTGGCCTGCGAGTTGTACGCAAAGCCATTCATGGAGATGGCGT
GCCCGGCAGAAACGTGAGAGACAATCAATCCCTAGGGCTTTGCTCCCGCT
GTCTATGTGACAAAGCGAGCACGCCTTCGTCCTACGATGAACAGTCTGGA
CACCACAAAGAAGCGAAGTCGGAAGAGAGAAGCAGAGAGATTATCCTAGA
CCAGACCCACCCTGCCCGTACTATTCGACTATAATACAGATTGTGCTGTG
GTGTTACAAAATCAGATGCATCGCGAAGGAAACATGATACGTACATGTCC
GCACCAAACTCTCTTTTTGCGTGTTCAGGGGTGGCAACAACTGACACTTT
CCTTGCAAGTTTGAAGTGACCCAGTCAAGGCCAGTGCCCGCCGCCTTGGG
GATAGGGTTAAAACCTCTACTTTTGGCGGTCATTTGCAGCCCACAAGAGT
AACTACGAACCCCCATCCTCGTCGATAGCTAGCGGTGCTTTAGTGTGGGC
GCTATCTGTGGTCTATAGGAGACCCCCAGCCCAGCCACAACCCGAATCGG
GCACCGATATTTTCCTTTCAGACGTTTCCGAAAAATCTGCGTTACAGACG
CGTCCGTATCCACGCCTGTGCAATGCAACCACAGGAACCGAGCGCTGGGC
ATGCGGCCGATGGACGTGGCGAAGCTCTCGAACTTCGACCCCTCGGGGAA
GGCCACCCTTATCTTGGCCTGCGCCAAGGCGGCGTGGGCACGGCGGGGGG
TTGGGGGGGGGGGGCAGGCGTGCGGCGGAGGCTCCCCGCAGGGAGAAGCG
GCGGCGGACTTCGGTACAACAAGCGATCAGGCTGGGGAGTCTTGTCGGCC
GAAGGACGGCGGAGACGAGGGCGGCGGCGACGCCGATGCTTCCTCGACAG
CGGGGTGGGCGGCGGCGGCGGCGGCGGCAGGAGCTGCTCCGGCGTCTCCT
GCTACGACGCTCTTTGCTTCTCCCGCTCGTCCGAGGTCGGCCATGTCGGT
GCTGTCAACCTCGGTGCTGGCGGTGTCTCGACCGGGATCACCAACGGCGG
CAGCGGCGCCGCCAACGGTCGCGGGGGAAGGAGGGGCGGCCGAGGGGGAG
GCAGCAGCAGCAGAAGGGGCAGCGAAGCAGAGAAAAAGCGGCGATCGAAC
GGGGTTGTCGTTCTGGCGCTGGGGGGGCAAGCCCCGCACCGGCGATGAGG
GTGGTAGCGGCGGAGGGGGGGGGAGCGCCGGCGTGGAGGAAGGGTGTGGA
GGGTGGGGTACTGGGATGGTTCGGGTGCCGTCCTTCGAACCGCCGGTCAA
AGGAAGCGGCGCAAACGGCGGCGGCGGCGGCGGCGGAGGCGGCGGCGGCG
TGCTGAGGGGAGGTGTGGAGAGAGGTAGTGGGGTGGACCGGGCGCCCGCA
TTCGAAACGCCGGTCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCTAG
CGCAAGTAACTCCGGTGAATGCTTAGGAGGCGGCAGTAGCAGCCGCAGCA
GCGGCAGAAAAAGGAGCGTGGACGGAGAGGTCGGCGGCACACTCGGCAAG
AAAGGCGGCGGCGGTGTCGTGAACCCCGGCAAGGAGTAGGAGGCAGCCGA
AGGGGCGGGGTGGCGTGGGGAGTCAAGGGGCACGCGGGTATGGAAATTTA
TTTGGCCCTGTTCCCCAGGCAACCCATTTGCGACAGACAGACAAGAAAGG
TCGGGGGCTTCGTAGACGAGTAACACCCCCCGCGATGCAACAGCAAAAAA
ACGGAAATGATCGGTCTGGGGGTAATTGTAAATTAGTTTTTAACCCACAG
ACCCAGGGTAGCTCCGGCAAGGCCTGTAGCCTGCCTCGGTTTCTTTCTCC
CCAGGAGTCTCACGGTGACGCGGCACACCGTTCGTAGCAAGCACGTTGAT
TTTTTTAGTGCAAGTGTATTGCCGGTTTTTGTCTTGCTCTGAAGCCCGCC
TCGGTTTTTACCCAAGAGTTAAGGTGAGGTGGCACACCGTTCGTAACACG
CACGTTAATTTGAGTGCAAGTGTAGTGACGGGTTTGGTCTTGCTCTGAAG
CCCGCCTCGGTTTTTGCCCAAGAGGTTAAGGTGAGGTGGCACACCGTTTG
TAACAAGCACGTTGGTTTGAGTGCAAGTGTAGTGACGGGTTTGGTCTTGC
TCTGAAGCCCGCCTCGGTTTTTGCCCAAGAGGTTAAGGTGAGGTGGCACA
CCGTTTGTAACAAGCACGTTGGTTTGAGTGCAAGTGTAGTGACGGGTTTG
GTCTTGCTCTGAAGCCCGCCTCGGTTTTTGCCTAATAAGAGGTTAGTGCG
AGGCGGCAGACCACAAAACAGAGTTTTTTTTTAGTTTGTCAGGCTGGCGG
TGTAGTGTTGATACGGATGCAACCCTGTCTGGGGGCACCGACGTCCACGC
TTCTCACCCATCTCGTGGTCCTTGTGTAGAAAAGTACACTGTAGTGCGTC
GCAGAAAGGATCTGGGCAAGGCGCATGACATCAAAATCCCATTTTGGTGG
GGCGTAGAGCCGTGCGGTTTGTTGACATTCGTAGCTTGCTGACCACACCA
CACGACGACGGCGTCGTGCGTCGGAAATCGCGGCAAGCCGTGCATGCTGC
TTTCGTGACAAGCAGGAAAGGTGGTGTGTCACGCCCGCGTCGACGAGGGA
CACACTCACTCATTCTGCAAGCGGACTCGACTGCTTTGGTCGAAACAACG
ATGCTGTGATTGTTGGCTGGGAATTTAGCAGACGCTGGGGTCCCTGACAA
ACCTGGAAGCGTGTGCGGCTTCCGGTTCGAACACCAATACTTTTTTTTGT
GTGGACGAGGTGCGATTTTTGGGAGCATAGGCAGGTGACCACTGCGAACG
ACGGCGTTAACAGATGCGGCCACCCCGAGAAGCAAAGAACAAGAAATTCT
G
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1012:87..3037+

>mRNA_Ecto-sp9_F_contig1012.160.1 ID=mRNA_Ecto-sp9_F_contig1012.160.1|Name=mRNA_Ecto-sp9_F_contig1012.160.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1962bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1012:87..3037+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGATGGCGTGCCCGGCAGAAACATGGAGATGGCGTGCCCGGCAGAA
ACGAACCGAGCGCTGGGCATGCGGCCGATGGACGTGGCGAAGCTCTCGAA
CTTCGACCCCTCGGGGAAGGCCACCCTTATCTTGGCCTGCGCCAAGGCGG
CGTGGGCACGGCGGGGGGTTGGGGGGGGGGGGCAGGCGTGCGGCGGAGGC
TCCCCGCAGGGAGAAGCGGCGGCGGACTTCGGTACAACAAGCGATCAGGC
TGGGGAGTCTTGTCGGCCGAAGGACGGCGGAGACGAGGGCGGCGGCGACG
CCGATGCTTCCTCGACAGCGGGGTGGGCGGCGGCGGCGGCGGCGGCAGGA
GCTGCTCCGGCGTCTCCTGCTACGACGCTCTTTGCTTCTCCCGCTCGTCC
GAGGTCGGCCATGTCGGTGCTGTCAACCTCGGTGCTGGCGGTGTCTCGAC
CGGGATCACCAACGGCGGCAGCGGCGCCGCCAACGGTCGCGGGGGAAGGA
GGGGCGGCCGAGGGGGAGGCAGCAGCAGCAGAAGGGGCAGCGAAGCAGAG
AAAAAGCGGCGATCGAACGGGGTTGTCGTTCTGGCGCTGGGGGGGCAAGC
CCCGCACCGGCGATGAGGGTGGTAGCGGCGGAGGGGGGGGGAGCGCCGGC
GTGGAGGAAGGGTGTGGAGGGTGGGGTACTGGGATGGTTCGGGTGCCGTC
CTTCGAACCGCCGGTCAAAGGAAGCGGCGCAAACGGCGGCGGCGGCGGCG
GCGGAGGCGGCGGCGGCGTGCTGAGGGGAGGTGTGGAGAGAGGTAGTGGG
GTGGACCGGGCGCCCGCATTCGAAACGCCGGTCGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCATCTAGCGCAAGTAACTCCGGTGAATGCTTAGGAGGCG
GCAGTAGCAGCCGCAGCAGCGGCAGAAAAAGGAGCGTGGACGGAGAGGTC
GGCGGCACACTCGGCAAGAAAGGCGGCGGCGGTGTCGTGAACCCCGGCAA
GGAGTAGGAACCGAGCGCTGGGCATGCGGCCGATGGACGTGGCGAAGCTC
TCGAACTTCGACCCCTCGGGGAAGGCCACCCTTATCTTGGCCTGCGCCAA
GGCGGCGTGGGCACGGCGGGGGGTTGGGGGGGGGGGGCAGGCGTGCGGCG
GAGGCTCCCCGCAGGGAGAAGCGGCGGCGGACTTCGGTACAACAAGCGAT
CAGGCTGGGGAGTCTTGTCGGCCGAAGGACGGCGGAGACGAGGGCGGCGG
CGACGCCGATGCTTCCTCGACAGCGGGGTGGGCGGCGGCGGCGGCGGCGG
CAGGAGCTGCTCCGGCGTCTCCTGCTACGACGCTCTTTGCTTCTCCCGCT
CGTCCGAGGTCGGCCATGTCGGTGCTGTCAACCTCGGTGCTGGCGGTGTC
TCGACCGGGATCACCAACGGCGGCAGCGGCGCCGCCAACGGTCGCGGGGG
AAGGAGGGGCGGCCGAGGGGGAGGCAGCAGCAGCAGAAGGGGCAGCGAAG
CAGAGAAAAAGCGGCGATCGAACGGGGTTGTCGTTCTGGCGCTGGGGGGG
CAAGCCCCGCACCGGCGATGAGGGTGGTAGCGGCGGAGGGGGGGGGAGCG
CCGGCGTGGAGGAAGGGTGTGGAGGGTGGGGTACTGGGATGGTTCGGGTG
CCGTCCTTCGAACCGCCGGTCAAAGGAAGCGGCGCAAACGGCGGCGGCGG
CGGCGGCGGAGGCGGCGGCGGCGTGCTGAGGGGAGGTGTGGAGAGAGGTA
GTGGGGTGGACCGGGCGCCCGCATTCGAAACGCCGGTCGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCATCTAGCGCAAGTAACTCCGGTGAATGCTTAGG
AGGCGGCAGTAGCAGCCGCAGCAGCGGCAGAAAAAGGAGCGTGGACGGAG
AGGTCGGCGGCACACTCGGCAAGAAAGGCGGCGGCGGTGTCGTGAACCCC
GGCAAGGAGTAG
back to top