mRNA_Ecto-sp9_F_contig10117.156.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10117.156.1
Unique NamemRNA_Ecto-sp9_F_contig10117.156.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10117.156.1 vs.
Match: Methylated-DNA--protein-cysteine (methyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG20_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 5.390e-89
Identity = 137/143 (95.80%), Postives = 139/143 (97.20%), Query Frame = 1 
Query:  175 MPCAKKDKSKITPFQSRVYETISGIPAGKISTYGGVAKVLNSSARAVGGALRGNPFAPVVPCHRVVMSDLTIGGFSGSFGDCADTRHKRKMLEEEGVRFTNDKVSGNAFVHVFSSPPAGGDKKTPSSGKRKRKAPSTEEEGLK 603
            MPCAK+DKSKITPFQSRVYETISGIPAGKISTYGGVAK LNSSARAVGGALRGNPFAPVVPCHRVVM DLTIGGFSGSFGDCADTR KRKMLEEEGVRFTNDKVSGNAFVHVFSSPPAG DKKTPSSGKRKRKAPST+EEGLK
Sbjct:    1 MPCAKRDKSKITPFQSRVYETISGIPAGKISTYGGVAKALNSSARAVGGALRGNPFAPVVPCHRVVMGDLTIGGFSGSFGDCADTRRKRKMLEEEGVRFTNDKVSGNAFVHVFSSPPAGVDKKTPSSGKRKRKAPSTDEEGLK 143
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10117.156.1 vs.
Match: Reverse (transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN66_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 1.060e-66
Identity = 118/139 (84.89%), Postives = 127/139 (91.37%), Query Frame = 3 
Query:  954 CQSVETTIRQQRLLFAGALVRQPDGRLPKRVMLGELVGGEGPGSGKPEQNRQMCLKDDLKMFEAEHGSTDADLCFFGVPETTWMEAAKVDRGVPWHTGVLQGAKRFMASWHKKEEEASRQRALKRNKKPDNNTDTATTT 1370
            CQSVE+TIRQ+RLLFAGAL RQPDGRLPKR+MLGELVGGEG G GKPEQN QMCLKDDLKMFEAEHGSTDA+ CFFGV ETTW+E AKVDRGV WHTGVLQGA+R +ASWHKKE+EASRQR LKRNKKP NNTD A+TT
Sbjct:  753 CQSVESTIRQRRLLFAGALARQPDGRLPKRLMLGELVGGEGSGRGKPEQNWQMCLKDDLKMFEAEHGSTDAEPCFFGVLETTWVEKAKVDRGVSWHTGVLQGAQRCLASWHKKEQEASRQRELKRNKKPGNNTDAASTT 891
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10117.156.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF72_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 2.810e-56
Identity = 93/125 (74.40%), Postives = 104/125 (83.20%), Query Frame = 3 
Query:  954 CQSVETTIRQQRLLFAGALVRQPDGRLPKRVMLGELVGGEGPGSGKPEQNRQMCLKDDLKMFEAEHGSTDADLCFFGVPETTWMEAAKVDRGVPWHTGVLQGAKRFMASWHKKEEEASRQRALKR 1328
            CQSVE T+RQ+ LLFAGA+ RQPDGRLPKR+M GELVGGE PG G PEQN  +CLKDDLKMFEA HGST     FFG+P+  W EAAKV+ GVPWH GVLQGA+RFMASWHK EE+ASRQRA+KR
Sbjct:   48 CQSVEATVRQRCLLFAGAMARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQRAIKR 172
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10117.156.1 vs.
Match: Reverse (transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 8.920e-54
Identity = 96/137 (70.07%), Postives = 109/137 (79.56%), Query Frame = 3 
Query:  954 CQSVETTIRQQRLLFAGALVRQPDGRLPKRVMLGELVGGEGPGSGKPEQNRQMCLKDDLKMFEAEHGSTDADLCFFGVPETTWMEAAKVDRGVPWHTGVLQGAKRFMASWHKKEEEASRQRALKRNKK-PDNNTDTA 1361
            CQSVE T+RQ+RLLFAGA+ RQPDGRLPKR+M GELVGGE PG G PEQN   CLKDD+KMFEA +GST      FGVP+  W EAAKV+ GVPWH GVLQGA+RFMASWHK +EEA+RQRA+KR    P N+ DTA
Sbjct:  186 CQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEANRQRAIKRGDSGPKNSLDTA 322
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10117.156.1 vs.
Match: Methylated-DNA--protein-cysteine (methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ84_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 1.260e-53
Identity = 90/97 (92.78%), Postives = 91/97 (93.81%), Query Frame = 1 
Query:  313 VGGALRGNPFAPVVPCHRVVMSDLTIGGFSGSFGDCADTRHKRKMLEEEGVRFTNDKVSGNAFVHVFSSPPAGGDKKTPSSGKRKRKAPSTEEEGLK 603
            V   L GNPFAPVVPCHRVVMSDLTIGGFSGSFGDCADTR KRKMLE+EGVRFTNDKVSGNAFVHVFSSPPAGGDKKTP SGKRKRKAPSTEEEGLK
Sbjct:   37 VKATLLGNPFAPVVPCHRVVMSDLTIGGFSGSFGDCADTRRKRKMLEDEGVRFTNDKVSGNAFVHVFSSPPAGGDKKTPLSGKRKRKAPSTEEEGLK 133
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10117.156.1 vs.
Match: Reverse (transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 6.260e-53
Identity = 94/125 (75.20%), Postives = 105/125 (84.00%), Query Frame = 3 
Query:  954 CQSVETTIRQQRLLFAGALVRQPDGRLPKRVMLGELVGGEGPGSGKPEQNRQMCLKDDLKMFEAEHGSTDADLCFFGVPETTWMEAAKVDRGVPWHTGVLQGAKRFMASWHKKEEEASRQRALKR 1328
            CQSVE T+RQ+RLLFAGA+ RQPDGRLPKR+M GELVGGE PG G PEQN  +CLKDDLKMFEA HGST     FFG+P+  W EAAKV+ GVPWH GVLQGA+RFMASWHK EE+ASRQRA+KR
Sbjct:  469 CQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQRAIKR 593
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10117.156.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI4_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 1.370e-52
Identity = 98/137 (71.53%), Postives = 111/137 (81.02%), Query Frame = 3 
Query:  954 CQSVETTIRQQRLLFAGALVRQPDGRLPKRVMLGELVGGEGPGSGKPEQNRQMCLKDDLKMFEAEHGSTDADLCFFGVPETTWMEAAKVDRGVPWHTGVLQGAKRFMASWHKKEEEASRQRALKRNKK-PDNNTDTA 1361
            CQSVE T+RQ+R+LFAGA+ RQPDGRLPKR+M GELVGGE PG G PEQN  +CLKDDLKMFEA HGST     FFG+P+  W EAAKV+ GVPWH GVLQGA+RFMASWHK EE+ASRQRA+KR    P N+ DTA
Sbjct:  575 CQSVEATVRQRRVLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQRAIKRGDSGPKNSLDTA 711
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10117.156.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 4.590e-52
Identity = 97/137 (70.80%), Postives = 111/137 (81.02%), Query Frame = 3 
Query:  954 CQSVETTIRQQRLLFAGALVRQPDGRLPKRVMLGELVGGEGPGSGKPEQNRQMCLKDDLKMFEAEHGSTDADLCFFGVPETTWMEAAKVDRGVPWHTGVLQGAKRFMASWHKKEEEASRQRALKR-NKKPDNNTDTA 1361
            CQSVE T+RQ+RLLFAGA+ RQPDGRLPKR+M GELVGGE PG G PEQN   CLKDD+KMFEA +GST      FGVP+  W EAAKV+ GVPWH GVLQGA+RFMASWHK +EEASRQRA+KR + +P N+ DTA
Sbjct:  492 CQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKRGDSRPKNSLDTA 628
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10117.156.1 vs.
Match: Reverse (transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 9.290e-52
Identity = 98/137 (71.53%), Postives = 110/137 (80.29%), Query Frame = 3 
Query:  954 CQSVETTIRQQRLLFAGALVRQPDGRLPKRVMLGELVGGEGPGSGKPEQNRQMCLKDDLKMFEAEHGSTDADLCFFGVPETTWMEAAKVDRGVPWHTGVLQGAKRFMASWHKKEEEASRQRALKRNKK-PDNNTDTA 1361
            CQSVE T+RQ+RLLFAGA+ RQPDGRLPKR+M GELVGGEGPG G PEQN   CLKDD+KMFEA +GST      FGVP+  W EAAKV+ GVPWH GVLQGA+RFMASWHK +EEASRQRA+KR    P N+ DTA
Sbjct:  637 CQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEGPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKRGDSGPKNSLDTA 773
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10117.156.1 vs.
Match: Reverse (transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC4_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 1.750e-51
Identity = 95/137 (69.34%), Postives = 108/137 (78.83%), Query Frame = 3 
Query:  954 CQSVETTIRQQRLLFAGALVRQPDGRLPKRVMLGELVGGEGPGSGKPEQNRQMCLKDDLKMFEAEHGSTDADLCFFGVPETTWMEAAKVDRGVPWHTGVLQGAKRFMASWHKKEEEASRQRALKRNKK-PDNNTDTA 1361
            CQSVE T+RQ+RLLFAGA+ RQPDGRLPKR+M GELVGGE PG G PEQN   CLKDD+KMFEA +GST      FGVP+  W EAAKV+ GVPWH GVLQGA+RF ASWHK +E+ASRQRA+KR    P N+ DTA
Sbjct:  308 CQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFTASWHKGKEKASRQRAIKRGDSGPKNSLDTA 444
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10117.156.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Methylated-DNA--protein-cysteine5.390e-8995.80methyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
Reverse1.060e-6684.89transcriptase domain-containing protein n=1 Tax=Ec... [more]
Uncharacterized2.810e-5674.40protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Reverse8.920e-5470.07transcriptase domain-containing protein n=2 Tax=Ec... [more]
Methylated-DNA--protein-cysteine1.260e-5392.78methyltransferase n=1 Tax=Ectocarpus siliculosus T... [more]
Reverse6.260e-5375.20transcriptase domain-containing protein n=1 Tax=Ec... [more]
Uncharacterized1.370e-5271.53protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.590e-5270.80protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Reverse9.290e-5271.53transcriptase domain-containing protein n=4 Tax=Ec... [more]
Reverse1.750e-5169.34transcriptase domain-containing protein n=5 Tax=Ec... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10117contigEcto-sp9_F_contig10117:1042..4804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue1.8e-24
Seed eggNOG ortholog4792.ETI45315
KEGG koko:K00567
EggNOG free text desc.6-O-methylguanine DNA methyltransferase, DNA binding domain
EggNOG OGs2S8GR@2759,3QGPD@4776,COG0350@1
EC2.1.1.63
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionputative methylated-DNA--protein-cysteine methyltransferase
Ec32 orthologEc-02_005130.1
Exons6
Model size1371
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10117.156.1prot_Ecto-sp9_F_contig10117.156.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10117 1662..4039 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928206.043637-UTR-Ecto-sp9_F_contig10117:1041..11631622928206.043637-UTR-Ecto-sp9_F_contig10117:1041..1163Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10117 1042..1163 +
1692277794.5648131-UTR-Ecto-sp9_F_contig10117:1041..11631692277794.5648131-UTR-Ecto-sp9_F_contig10117:1041..1163Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10117 1042..1163 +
1622928206.05551-UTR-Ecto-sp9_F_contig10117:1609..16611622928206.05551-UTR-Ecto-sp9_F_contig10117:1609..1661Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10117 1610..1661 +
1692277794.5756326-UTR-Ecto-sp9_F_contig10117:1609..16611692277794.5756326-UTR-Ecto-sp9_F_contig10117:1609..1661Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10117 1610..1661 +
1622928206.1539156-UTR-Ecto-sp9_F_contig10117:4039..48041622928206.1539156-UTR-Ecto-sp9_F_contig10117:4039..4804Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10117 4040..4804 +
1692277794.6264973-UTR-Ecto-sp9_F_contig10117:4039..48041692277794.6264973-UTR-Ecto-sp9_F_contig10117:4039..4804Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10117 4040..4804 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928206.0772085-CDS-Ecto-sp9_F_contig10117:1661..17291622928206.0772085-CDS-Ecto-sp9_F_contig10117:1661..1729Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10117 1662..1729 +
1692277794.5881546-CDS-Ecto-sp9_F_contig10117:1661..17291692277794.5881546-CDS-Ecto-sp9_F_contig10117:1661..1729Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10117 1662..1729 +
1622928206.1030188-CDS-Ecto-sp9_F_contig10117:2070..21581622928206.1030188-CDS-Ecto-sp9_F_contig10117:2070..2158Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10117 2071..2158 +
1692277794.5975695-CDS-Ecto-sp9_F_contig10117:2070..21581692277794.5975695-CDS-Ecto-sp9_F_contig10117:2070..2158Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10117 2071..2158 +
1622928206.116049-CDS-Ecto-sp9_F_contig10117:2959..30301622928206.116049-CDS-Ecto-sp9_F_contig10117:2959..3030Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10117 2960..3030 +
1692277794.6048036-CDS-Ecto-sp9_F_contig10117:2959..30301692277794.6048036-CDS-Ecto-sp9_F_contig10117:2959..3030Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10117 2960..3030 +
1622928206.1293924-CDS-Ecto-sp9_F_contig10117:3417..34991622928206.1293924-CDS-Ecto-sp9_F_contig10117:3417..3499Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10117 3418..3499 +
1692277794.6120105-CDS-Ecto-sp9_F_contig10117:3417..34991692277794.6120105-CDS-Ecto-sp9_F_contig10117:3417..3499Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10117 3418..3499 +
1622928206.1427934-CDS-Ecto-sp9_F_contig10117:3916..40391622928206.1427934-CDS-Ecto-sp9_F_contig10117:3916..4039Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10117 3917..4039 +
1692277794.6193984-CDS-Ecto-sp9_F_contig10117:3916..40391692277794.6193984-CDS-Ecto-sp9_F_contig10117:3916..4039Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10117 3917..4039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10117.156.1

>prot_Ecto-sp9_F_contig10117.156.1 ID=prot_Ecto-sp9_F_contig10117.156.1|Name=mRNA_Ecto-sp9_F_contig10117.156.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=144bp
MPCAKKDKSKITPFQSRVYETISGIPAGKISTYGGVAKVLNSSARAVGGA
LRGNPFAPVVPCHRVVMSDLTIGGFSGSFGDCADTRHKRKMLEEEGVRFT
NDKVSGNAFVHVFSSPPAGGDKKTPSSGKRKRKAPSTEEEGLK*
back to top

mRNA from alignment at Ecto-sp9_F_contig10117:1042..4804+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10117.156.1 ID=mRNA_Ecto-sp9_F_contig10117.156.1|Name=mRNA_Ecto-sp9_F_contig10117.156.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3763bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10117:1042..4804+ (Ectocarpus species9 EcSCA_722f female)
GAGAAAAGAGGCAGGGCGGCAAGGCACACCCACAGAACAGAGAGCACACC
ACATACCAGACCACAGAGGAGTGTGCTCTCTCCCCGTTCCCAAAACGTGA
TATCGTCAAGGCTACGCTGCTGGTGAGCGAAAAACAGCTGGGTCGCCACC
TACGGCGGTGGCTCTAGAGAAACCAACTTCAAATCCGCGCGCGCTTTTGT
TGCAAATTTGCAAGTTTGTCATGCAGACACCCATAACCAGAGGAGCTGCC
GTCTGTCTTCTTTCCCTCTCGGCCTCGCGGCGTCGTTCTGCGCTAAGGTT
TGGCCAACGTTTACTACTGCGCAGTGCTCTACTATAGCCAAAACTGAGCA
AATTGAGCAGAAAACAGGGAATGTTATATAACGTGCATTGCCTGCATGGC
CCTGTGAATGCGGACGGACGTCGTCTGATCCAGTTGGAAAGGCCGATGTT
GCAGGGCACTGAGCAGAGATTGGAATATAATATTTCGTTATGGTGAAGAC
AACAGCAGCAACAACAACGACGTGCAGAATGAAGCGCTGCTCTCCGCGAC
CCCCCTGCTCTGCTGCAGTTGCCGCTGTTTCCGAGGAGCGACGACTGCAC
TCGTGCATTGCTATAGCACCATGCCGTGCGCCAAGAAGGACAAGAGCAAG
ATTACACCTTTCCAATCGCGGGTATACGAAACAATCAGGTGCAGCAATTC
TTTCCTCGAGAGAGGGCAGCTATTTCAACACCTGTGCGAGCCAGAGAGCT
CCAGCATGCTTGAGATAGAGCAGAGCACGACGTATGGTATCATGTCTACG
GGCACAAGTCAAGCTTTCAGCCCGACCGCCGTGCGGGACAACTGCCGTTG
ACCGTTGTGTATACACCGTCCTGATGCCACAGAAGGAAGGAAGCAAGCCT
GTAGAACCATCTACATAGTGACGCGTTTGGAGAAAACTTCTATTATCCAC
AGGGTAGGGCGTGTTTACTGCTGAAGACCCCCTATACTGACACGCCTTCT
CTTGTGCTTGATGATTCGATCAATCCCAGTGGTATCCCCGCAGGCAAGAT
CTCAACATACGGAGGAGTGGCAAAAGTTCTCAACTCCAGTGCCCGTGCTG
TAGGTGGGGCTCTCAGGGTGAGCCCTTTCACCCCCCCCTGTTTTCCATAG
CCTTCGCGCGAGGCCAAACGGAACTCTGTTGGTGGAGTTGCGTGTTCGTT
CATGTCTAGCTCTACGGGACACAGCAGTCATTGTTTCGCCCTACGTAGCC
TCCTAGGGAGTTCAACTTGCGGGAGGTCAACGCACTTCTCGCATAAACCC
AAACGTATTGAAACCCACCAAGAAAGTACCTTTCCGCCTCGGCCTTCATA
CCGCCATGCAAGGATTAGGAAGTTGACCACGTTTTATTGGAGAGGGCGGG
GGGGGCGGAGTAAAACCTCGTGCTTAGACCTCGCTTTTACCATGTGAATG
CCTTGACGAGGACAGAGCACGACGGTCCACTACTGCTGTTGGCCTCTTTG
TGCACAATGTATCGGCGGAGAAACAGGGTTAGCTCAATATCGCTGAGCGC
ATGAAATCTCGCCTGTGTCTTCTTGTTTTTGTCGATTTGTTCCATCGTCA
TTTTGCGTTTCGCTCATCTCTGCATACATTTGGCGATGGAATTGGCTAGC
TGTCATCCGCTTGAACTTGGGACACCTTCCCCTTCGTCGAATCGCATAAA
AACGAGCAGCGGTGTCTGTAGATTGATGTGTGGTCCATGCTCCTTCCATT
TTGCTTCGTTGTGGCCCACGACCCTCTCTTTGAGTGTTGGTGATCCGTTC
GGAACCAACCTAACCCTTTGTTCGCTTCCCTGACTAGCTAGCCTCTTGGC
GGCGCGTGCTTTGTTCACGCCACTGCTGCGACGTTTGCCTGCAATTCGCG
GACGTCTACCCTGCGCAGGGCAATCCGTTCGCCCCCGTGGTTCCCTGCCA
TCGCGTTGTCATGAGTGACCTCACCATCGGAGGTTTCAGGTGTGAAAAAG
CGCCCCGCGCTTCGTCGTCGTTGTCGTTATCGTTGTTGTCGTCGTTGTCA
TCGTCGTTGTCGTTGGCAAAACAGCGATGTAATCGGGGATATCAAGCCCG
CGAGAAGGAGAATTGGTCCTATGACGCCGTTTCGTTCGGGACTGTGAATC
GGGGCGATCGTCCAACTGGATAGCCCGATTAATATCCGAAGCTGAGGCGT
ACATTTGGAGGTAGTTGTGTCGAGAATTTTCCGCATGCCCGCTGATATTC
TTGTCACTGTGTTAATCGGCACTGCTACCGAAATTGCGACCGTATTCCAG
CTCACGCGAGTTTGCCGTCCCATTTTACGAACAAAGCCCGGGGGGAATTC
AATGTTCTAATACCGTCTGTGTCCAGTGGGAGCTTTGGAGACTGTGCCGA
CACGCGCCACAAGAGGAAAATGCTGGAAGAGGAGGGTGTGCGTTTCACCA
ATGACAAGGTGATAAACATATCCGCGAAGTTTAGTGTCCGAATTTCAACA
CTCCGTCCAGAGGAATAGTCCCGAAAGGGCCGTGTGCTTACTCACACCTA
TGCTGCTGTTTTTTCGCAGCCCAACTCGGCGGAAGAAACAACATGAAACG
AGAGTATGACACACGTTCGATGTTTCCTTCCATTTAGAAGGACAGCGTTG
ATAGGCGCGGGTCTTGCTGAGACCTAGTGCTAAAGTGGGGAAACACTTGG
AAAGGTCAGGGAGAAACCGAACAGAAACAAGCGACAAGCATGAGCAGTAT
CTAGCTGCCCACCACGCTGAGAGAGTACCCTCTCATGATGACGGATATTG
TGCTGCCCCCCCCCCGCCCCCCCCCTACGCCGATGCGCGCTCCTCCTTCA
CGGTACGCGTGCTGCCACGATCAAGGTGTCCGGCAACGCATTTGTGCACG
TGTTCTCGAGCCCCCCAGCAGGAGGCGACAAGAAGACACCATCGAGCGGA
AAGAGGAAACGAAAGGCGCCATCGACAGAGGAAGAGGGATTAAAATAGAA
CCATCCTTTTTGTCTGTCTTTTCAACTACAACTATTAGCTGCTCCGCCGG
GCAACAGATTTTGTATTTTGAAAAAAAAGATAATTAGCTTCTTTTCTCGG
CATCACCTAGAGTAGATGAGACATCACAGCAGTGTCGAAGGTGCCCACCC
ACGCCGTCTACCCCGCGCCACTATGTAACTGTGTGCACCACAGGCCAGAA
GTTTCGTTGCGACACGTTGAGGTATAGCACGAATGTAGTTCGTCATGTAG
CTCTTTTAAAGTGATGCGCAATCCCCGGTGGATTTCAGCCGTGTGCAGGG
CACCTACCGGCAGCTTTCCTACGCCCAGACCCTGAAGAGGGTAGGTGCCA
GAGCGTGGAAACCACTATCCGGCAACAGCGCCTGCTGTTCGCGGGAGCGC
TGGTAAGGCAGCCAGACGGACGACTCCCGAAACGGGTGATGCTTGGCGAA
TTAGTGGGGGGGGAGGGTCCGGGCAGTGGGAAACCGGAGCAAAACAGGCA
GATGTGCCTGAAGGACGACCTCAAGATGTTCGAAGCAGAGCACGGATCTA
CGGACGCCGACCTATGCTTCTTCGGAGTCCCGGAAACAACTTGGATGGAA
GCAGCGAAGGTGGACCGGGGGGTACCGTGGCATACAGGGGTACTGCAGGG
AGCTAAGAGGTTCATGGCCTCCTGGCACAAGAAGGAAGAGGAGGCTAGCC
GACAACGAGCGCTCAAACGAAACAAGAAGCCCGACAACAACACGGACACG
GCAACAACCACGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10117:1042..4804+

>mRNA_Ecto-sp9_F_contig10117.156.1 ID=mRNA_Ecto-sp9_F_contig10117.156.1|Name=mRNA_Ecto-sp9_F_contig10117.156.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=864bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10117:1042..4804+ (Ectocarpus species9 EcSCA_722f female)
ATGCCGTGCGCCAAGAAGGACAAGAGCAAGATTACACCTTTCCAATCGCG
GGTATACGAAACAATCAGATGCCGTGCGCCAAGAAGGACAAGAGCAAGAT
TACACCTTTCCAATCGCGGGTATACGAAACAATCAGTGGTATCCCCGCAG
GCAAGATCTCAACATACGGAGGAGTGGCAAAAGTTCTCAACTCCAGTGCC
CGTGCTGTAGGTGGGGCTCTCAGGTGGTATCCCCGCAGGCAAGATCTCAA
CATACGGAGGAGTGGCAAAAGTTCTCAACTCCAGTGCCCGTGCTGTAGGT
GGGGCTCTCAGGGGCAATCCGTTCGCCCCCGTGGTTCCCTGCCATCGCGT
TGTCATGAGTGACCTCACCATCGGAGGTTTCAGGGCAATCCGTTCGCCCC
CGTGGTTCCCTGCCATCGCGTTGTCATGAGTGACCTCACCATCGGAGGTT
TCAGTGGGAGCTTTGGAGACTGTGCCGACACGCGCCACAAGAGGAAAATG
CTGGAAGAGGAGGGTGTGCGTTTCACCAATGACAAGTGGGAGCTTTGGAG
ACTGTGCCGACACGCGCCACAAGAGGAAAATGCTGGAAGAGGAGGGTGTG
CGTTTCACCAATGACAAGGTGTCCGGCAACGCATTTGTGCACGTGTTCTC
GAGCCCCCCAGCAGGAGGCGACAAGAAGACACCATCGAGCGGAAAGAGGA
AACGAAAGGCGCCATCGACAGAGGAAGAGGGATTAAAATAGGTGTCCGGC
AACGCATTTGTGCACGTGTTCTCGAGCCCCCCAGCAGGAGGCGACAAGAA
GACACCATCGAGCGGAAAGAGGAAACGAAAGGCGCCATCGACAGAGGAAG
AGGGATTAAAATAG
back to top