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Homology
BLAST of mRNA_Ecto-sp9_F_contig1011.149.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN23_9PHAE) HSP 1 Score: 265 bits (678), Expect = 6.450e-81 Identity = 145/154 (94.16%), Postives = 147/154 (95.45%), Query Frame = 1
Query: 52 MTEVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAMSTENRCPHCFECPCCRCVLVPSPVSLDRSSSSFSSAGPPYCLRCLYCQWTSEDSGLVAPDPAGLAAXXXXXXXXXXXXXXXXXXMVVGALLEAAQQ 513
M EVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDA+STENRCPHCFECPCCRCVLVPSPVSLDRS+SSFSSAG YCLRCLYCQWTSEDSGLVA DPAGLAAXXXXXXXXXXXXXXXXXX GALLEAAQQ
Sbjct: 1 MVEVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAVSTENRCPHCFECPCCRCVLVPSPVSLDRSASSFSSAGTSYCLRCLYCQWTSEDSGLVAQDPAGLAAXXXXXXXXXXXXXXXXXXXXXGALLEAAQQ 154
BLAST of mRNA_Ecto-sp9_F_contig1011.149.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF1_ECTSI) HSP 1 Score: 132 bits (331), Expect = 1.050e-31 Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 1
Query: 52 MTEVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAMSTEN 237
M EVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAMS EN
Sbjct: 1 MAEVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAMSAEN 62
BLAST of mRNA_Ecto-sp9_F_contig1011.149.1 vs.
Match: Dynactin (p62 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T460_9STRA) HSP 1 Score: 103 bits (258), Expect = 7.240e-22 Identity = 54/129 (41.86%), Postives = 79/129 (61.24%), Query Frame = 1
Query: 37 NTASSMTEVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAMSTENRCPHCFECPCCRCVLVPSPVSLDRSSS-SFSSAGPPYCLRCLYCQWTSEDS-GLVAPDPAGL 417
N S +V++ DY G+ PL+ +++S S+CLV+ HP S EEVES +C HC ++F +A S+ +RCP CF+CP C L+ +S+D S+ + AG Y RC YC+W+S DS GL+ P L
Sbjct: 30 NEGVSDVKVVFTDYQGWWAPLTHLFYSNASQCLVSAHPESSIEEVESFYCSHCLNYFADAEAASSYHRCPRCFDCPQCTSALLI--ISVDEESNHEENDAG--YTFRCGYCRWSSADSIGLIESTPEAL 154
BLAST of mRNA_Ecto-sp9_F_contig1011.149.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1ISB2_9EUGL) HSP 1 Score: 53.5 bits (127), Expect = 2.030e-5 Identity = 27/80 (33.75%), Postives = 40/80 (50.00%), Query Frame = 1
Query: 154 SVQEEVESHFCPHCTSFFRTPDAMSTENRCPHCFECPCCRCVLVPSPVSLDRSSSSFSSAGPPYCLRCLYCQWTSEDSGL 393
S+Q+E+E+++CP C FRT + RC C +CP C L S ++D + + LRC +C W S GL
Sbjct: 41 SLQQEIETYYCPQCLQEFRTQTQLDIGGRCLDCCDCPVCGTGLSDSVRTVDGKTM--------HHLRCEHCNWDSLALGL 112
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1011.149.1 vs.
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
| Match Name | E-value | Identity | Description | |
|---|
| Uncharacterized | 6.450e-81 | 94.16 | protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... | [more] |
| Uncharacterized | 1.050e-31 | 96.77 | protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... | [more] |
| Dynactin | 7.240e-22 | 41.86 | p62 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T... | [more] |
| Hypothetical | 2.030e-5 | 33.75 | protein (Fragment) n=1 Tax=Eutreptiella gymnastica... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Metazoa |
| Seed ortholog score | 77.4 |
| Seed ortholog evalue | 9.8e-12 |
| Seed eggNOG ortholog | 8090.ENSORLP00000008930 |
| Preferred name | DCTN4 |
| KEGG ko | ko:K10426 |
| KEGG Pathway | ko04962,ko05016,map04962,map05016 |
| GOs | GO:0000775,GO:0000776,GO:0000922,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005868,GO:0005869,GO:0005875,GO:0006810,GO:0006888,GO:0006928,GO:0007017,GO:0007018,GO:0007097,GO:0008150,GO:0009987,GO:0015629,GO:0015630,GO:0016192,GO:0019882,GO:0019884,GO:0019886,GO:0030286,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0047485,GO:0048002,GO:0048193,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0098687,GO:1902494 |
| EggNOG free text desc. | dynactin |
| EggNOG OGs | 38D0C@33154,3BDEF@33208,3D0S6@33213,47Z7Z@7711,48YGE@7742,49QQP@7898,KOG3896@1,KOG3896@2759 |
| COG Functional cat. | N |
| Best tax level | Actinopterygii |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko03036,ko04812 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 706 |
| Cds size | 705 |
| Stop | 0 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928205.4217327-CDS-Ecto-sp9_F_contig1011:14858..15324 | 1622928205.4217327-CDS-Ecto-sp9_F_contig1011:14858..15324 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig1011 14859..15324 - |
| 1692277794.3109555-CDS-Ecto-sp9_F_contig1011:14858..15324 | 1692277794.3109555-CDS-Ecto-sp9_F_contig1011:14858..15324 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig1011 14859..15324 - |
| 1622928205.4383538-CDS-Ecto-sp9_F_contig1011:16548..16787 | 1622928205.4383538-CDS-Ecto-sp9_F_contig1011:16548..16787 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig1011 16549..16787 - |
| 1692277794.323058-CDS-Ecto-sp9_F_contig1011:16548..16787 | 1692277794.323058-CDS-Ecto-sp9_F_contig1011:16548..16787 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig1011 16549..16787 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1011.149.1 >prot_Ecto-sp9_F_contig1011.149.1 ID=prot_Ecto-sp9_F_contig1011.149.1|Name=mRNA_Ecto-sp9_F_contig1011.149.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=235bp
MLFVLLCDLPCRNTASSMTEVLYGDYNGYLRPLSLMYFSLDSRCLVADHP
RSVQEEVESHFCPHCTSFFRTPDAMSTENRCPHCFECPCCRCVLVPSPVS
LDRSSSSFSSAGPPYCLRCLYCQWTSEDSGLVAPDPAGLAAAAAAREKKG
GGSNRTSTAMVVGALLEAAQQREARAAQRAGSGAGGGGGGRGRGRDRGRG
ARLRAGSTNSGGGRGREVDSSLFSAAASTTGPWKA back to topmRNA from alignment at Ecto-sp9_F_contig1011:14859..16787- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp9_F_contig1011.149.1 ID=mRNA_Ecto-sp9_F_contig1011.149.1|Name=mRNA_Ecto-sp9_F_contig1011.149.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1929bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1011:14859..16787- (Ectocarpus species9 EcSCA_722f female)
ATGCTCTTTGTTCTCTTGTGCGACCTGCCTTGTCGCAATACAGCAAGCAG
TATGACAGAAGTTCTATACGGCGACTACAATGGCTACCTCCGGCCGCTGA
GCCTGATGTACTTCTCGCTCGACAGTCGCTGCCTGGTGGCCGACCATCCA
CGCAGCGTCCAGGAGGAAGTGGAATCCCACTTCTGCCCACACTGCACCTC
GTTCTTCAGAACGCCCGATGCGATGTCAACGGAAAACAGGTGGGGGTGCC
CGTCCGACGTTGTTGTTGTGCGTGGAGGTAGCACTGTAGTGGCAGGAACC
ATTCTTTGGGCCCGATTTTATGCTGAGTAGTGCGGGCTGAGCTTTCTCCT
GTTCCGCACTCCTGGATGTGTGCACATTTTTGAATTTTCGTCGTGTTTTG
TTCTTTGCCCCGCCTAATGTGATCAACGCGCATCGTCGTACATAGACTGA
TACACATGTACACCCCCGGGCAGCAATTGAACGCTCCACGTACGTTTGAC
CATATTTAATTTGTTGAGTACTCCCCTAATCGTTTCACATGATCATTCGC
TCACAGGTATCCGTAACTTGTATTTACCTTGTGACGCAAGATACCACACC
CCCTCGACTTGCTTGGACTGAATTTCAAAGCTCCCTTACTTCCACGACGA
AGAGGAGGCACAAATCGTGTGACACATTTACGGAAAGCTCTCGGCGAGAC
GGTTCCAACGCCGCCATTTTCGTCACCGCCGTGGTTTCTACTTTGGAGTA
ATCGAGCTTTGAAAATTGATCCCCGGGGGTGTGGTATCTTGTGTCACCGG
TCACCCGGTCATACATACCACAGCAGTTGCTGCACGAACAGAACAACGAA
CGGCAACGTACGGACTAAATTCGTCCGCGGCGCAAAGCTTACAACTCGAT
AGGGCTTCAGCGGTACTCTCTATCTCCGTCTTCGAACTTCCAGGCCCACT
GTTACATGTCTAGACTATCCAAGAACAAGCGCTTCATTTTGTGCAGTAAT
GCTAATATCCGAAGGAGGAGCAAGCGCTGTTGAGATCAAGTCGGAACGAG
GGGCCAACCATCCATATACTGCTGTGTAGAGTTTCTCGCATGTACAGCAG
GACAATAAAAGCTGTGTGCGGTTTTCAGCATTCTAGGAACCACAAACAAG
CCTCTGTATCTAGATACAATCGAGACAGGCATGCCTGCTGTGCGCGTCGT
ACACATGACTAAAACATTTTGGTCATCCCACTACAGAACACACCAGCCGC
AACGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCC
CCCTCCCCCCCCCCGCCCGCCCGCCCGCGCGCCCCCCCCCCCCGCCCCCG
CCCGCCCCCCCCCCCCCNNNNNNNNNNGTAAACAACACAAAAACATTTTG
GCCCCCCCCCCACCACACCCCCCCCCCCCAACGCCCCCCCCCCCCCCCCC
CGCCTTTGCACAGATGCCCGCATTGCTTCGAGTGCCCGTGCTGCCGCTGC
GTCCTGGTCCCATCGCCGGTGAGCCTCGACCGCTCTTCCTCCTCCTTCTC
CTCTGCTGGCCCGCCGTACTGCTTGCGGTGCCTCTACTGCCAGTGGACCA
GCGAGGACTCGGGCCTCGTCGCACCGGACCCAGCGGGCCTTGCCGCCGCC
GCCGCCGCTCGAGAGAAGAAGGGTGGCGGTAGCAACAGGACCAGCACGGC
GATGGTAGTCGGCGCTCTGCTCGAGGCGGCCCAGCAAAGGGAAGCGAGGG
CCGCCCAGCGAGCGGGGTCAGGGGCGGGTGGAGGGGGCGGGGGCCGGGGC
CGGGGCCGGGATCGGGGGCGGGGTGCCAGGCTTCGCGCCGGGAGCACGAA
CAGCGGTGGCGGCCGCGGCCGCGAAGTGGATTCGTCGCTGTTCTCTGCGG
CGGCGAGTACGACCGGGCCCTGGAAGGCA back to topCoding sequence (CDS) from alignment at Ecto-sp9_F_contig1011:14859..16787- >mRNA_Ecto-sp9_F_contig1011.149.1 ID=mRNA_Ecto-sp9_F_contig1011.149.1|Name=mRNA_Ecto-sp9_F_contig1011.149.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1410bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1011:14859..16787- (Ectocarpus species9 EcSCA_722f female)
ATGCTCTTTGTTCTCTTGTGCGACCTGCCTTGTCGCAATACAGCAAGCAG
TATGACAGAAGTTCTATACGGCGACTACAATGGCTACCTCCGGCCGCTGA
GCCTGATGTACTTCTCGCTCGACAGTCGCTGCCTGGTGGCCGACCATCCA
CGCAGCGTCCAGGAGGAAGTGGAATCCCACTTCTGCCCACACTGCACCTC
GTTCTTCAGAACGCCCGATGCGATGTCAACGGAAAACAGATGCTCTTTGT
TCTCTTGTGCGACCTGCCTTGTCGCAATACAGCAAGCAGTATGACAGAAG
TTCTATACGGCGACTACAATGGCTACCTCCGGCCGCTGAGCCTGATGTAC
TTCTCGCTCGACAGTCGCTGCCTGGTGGCCGACCATCCACGCAGCGTCCA
GGAGGAAGTGGAATCCCACTTCTGCCCACACTGCACCTCGTTCTTCAGAA
CGCCCGATGCGATGTCAACGGAAAACAGATGCCCGCATTGCTTCGAGTGC
CCGTGCTGCCGCTGCGTCCTGGTCCCATCGCCGGTGAGCCTCGACCGCTC
TTCCTCCTCCTTCTCCTCTGCTGGCCCGCCGTACTGCTTGCGGTGCCTCT
ACTGCCAGTGGACCAGCGAGGACTCGGGCCTCGTCGCACCGGACCCAGCG
GGCCTTGCCGCCGCCGCCGCCGCTCGAGAGAAGAAGGGTGGCGGTAGCAA
CAGGACCAGCACGGCGATGGTAGTCGGCGCTCTGCTCGAGGCGGCCCAGC
AAAGGGAAGCGAGGGCCGCCCAGCGAGCGGGGTCAGGGGCGGGTGGAGGG
GGCGGGGGCCGGGGCCGGGGCCGGGATCGGGGGCGGGGTGCCAGGCTTCG
CGCCGGGAGCACGAACAGCGGTGGCGGCCGCGGCCGCGAAGTGGATTCGT
CGCTGTTCTCTGCGGCGGCGAGTACGACCGGGCCCTGGAAGGCAATGCCC
GCATTGCTTCGAGTGCCCGTGCTGCCGCTGCGTCCTGGTCCCATCGCCGG
TGAGCCTCGACCGCTCTTCCTCCTCCTTCTCCTCTGCTGGCCCGCCGTAC
TGCTTGCGGTGCCTCTACTGCCAGTGGACCAGCGAGGACTCGGGCCTCGT
CGCACCGGACCCAGCGGGCCTTGCCGCCGCCGCCGCCGCTCGAGAGAAGA
AGGGTGGCGGTAGCAACAGGACCAGCACGGCGATGGTAGTCGGCGCTCTG
CTCGAGGCGGCCCAGCAAAGGGAAGCGAGGGCCGCCCAGCGAGCGGGGTC
AGGGGCGGGTGGAGGGGGCGGGGGCCGGGGCCGGGGCCGGGATCGGGGGC
GGGGTGCCAGGCTTCGCGCCGGGAGCACGAACAGCGGTGGCGGCCGCGGC
CGCGAAGTGGATTCGTCGCTGTTCTCTGCGGCGGCGAGTACGACCGGGCC
CTGGAAGGCA back to top
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