prot_Ecto-sp9_F_contig1011.149.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig1011.149.1
Unique Nameprot_Ecto-sp9_F_contig1011.149.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length235
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1011.149.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN23_9PHAE)

HSP 1 Score: 265 bits (678), Expect = 6.450e-81
Identity = 145/154 (94.16%), Postives = 147/154 (95.45%), Query Frame = 0 
Query:   18 MTEVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAMSTENRCPHCFECPCCRCVLVPSPVSLDRSSSSFSSAGPPYCLRCLYCQWTSEDSGLVAPDPAGLAAXXXXXXXXXXXXXXXXXXMVVGALLEAAQQ 171
            M EVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDA+STENRCPHCFECPCCRCVLVPSPVSLDRS+SSFSSAG  YCLRCLYCQWTSEDSGLVA DPAGLAAXXXXXXXXXXXXXXXXXX   GALLEAAQQ
Sbjct:    1 MVEVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAVSTENRCPHCFECPCCRCVLVPSPVSLDRSASSFSSAGTSYCLRCLYCQWTSEDSGLVAQDPAGLAAXXXXXXXXXXXXXXXXXXXXXGALLEAAQQ 154
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BLAST of mRNA_Ecto-sp9_F_contig1011.149.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF1_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 1.050e-31
Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 0 
Query:   18 MTEVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAMSTEN 79
            M EVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAMS EN
Sbjct:    1 MAEVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAMSAEN 62
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BLAST of mRNA_Ecto-sp9_F_contig1011.149.1 vs.
Match: Dynactin (p62 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T460_9STRA)

HSP 1 Score: 103 bits (258), Expect = 7.240e-22
Identity = 54/129 (41.86%), Postives = 79/129 (61.24%), Query Frame = 0 
Query:   13 NTASSMTEVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAMSTENRCPHCFECPCCRCVLVPSPVSLDRSSS-SFSSAGPPYCLRCLYCQWTSEDS-GLVAPDPAGL 139
            N   S  +V++ DY G+  PL+ +++S  S+CLV+ HP S  EEVES +C HC ++F   +A S+ +RCP CF+CP C   L+   +S+D  S+   + AG  Y  RC YC+W+S DS GL+   P  L
Sbjct:   30 NEGVSDVKVVFTDYQGWWAPLTHLFYSNASQCLVSAHPESSIEEVESFYCSHCLNYFADAEAASSYHRCPRCFDCPQCTSALLI--ISVDEESNHEENDAG--YTFRCGYCRWSSADSIGLIESTPEAL 154
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BLAST of mRNA_Ecto-sp9_F_contig1011.149.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1ISB2_9EUGL)

HSP 1 Score: 53.5 bits (127), Expect = 2.030e-5
Identity = 27/80 (33.75%), Postives = 40/80 (50.00%), Query Frame = 0 
Query:   52 SVQEEVESHFCPHCTSFFRTPDAMSTENRCPHCFECPCCRCVLVPSPVSLDRSSSSFSSAGPPYCLRCLYCQWTSEDSGL 131
            S+Q+E+E+++CP C   FRT   +    RC  C +CP C   L  S  ++D  +         + LRC +C W S   GL
Sbjct:   41 SLQQEIETYYCPQCLQEFRTQTQLDIGGRCLDCCDCPVCGTGLSDSVRTVDGKTM--------HHLRCEHCNWDSLALGL 112
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1011.149.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized6.450e-8194.16protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.050e-3196.77protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Dynactin7.240e-2241.86p62 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T... [more]
Hypothetical2.030e-533.75protein (Fragment) n=1 Tax=Eutreptiella gymnastica... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008603Dynactin subunit 4PFAMPF05502Dynactin_p62coord: 44..159
e-value: 2.7E-15
score: 56.1
IPR008603Dynactin subunit 4PANTHERPTHR13034DYNACTIN P62 SUBUNITcoord: 23..172

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1011contigEcto-sp9_F_contig1011:14859..16787 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1011.149.1mRNA_Ecto-sp9_F_contig1011.149.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig1011 14859..16787 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig1011.149.1 ID=prot_Ecto-sp9_F_contig1011.149.1|Name=mRNA_Ecto-sp9_F_contig1011.149.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=235bp
MLFVLLCDLPCRNTASSMTEVLYGDYNGYLRPLSLMYFSLDSRCLVADHP
RSVQEEVESHFCPHCTSFFRTPDAMSTENRCPHCFECPCCRCVLVPSPVS
LDRSSSSFSSAGPPYCLRCLYCQWTSEDSGLVAPDPAGLAAAAAAREKKG
GGSNRTSTAMVVGALLEAAQQREARAAQRAGSGAGGGGGGRGRGRDRGRG
ARLRAGSTNSGGGRGREVDSSLFSAAASTTGPWKA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008603DCTN4