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Homology
BLAST of mRNA_Ecto-sp9_F_contig11595.1341.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ26_ECTSI) HSP 1 Score: 523 bits (1347), Expect = 8.510e-182 Identity = 328/377 (87.00%), Postives = 334/377 (88.59%), Query Frame = 1
Query: 1 DTDTEVDEVNDDNIGPLLAAQPDLPTTAAAAATAAVPSPSERTAAACLPHATGAHEQQQLPQQVPSGGRRSAAXXXXXAGPTGXXXXXXXXXXSDANGATLARLVSTWGPVTSQDGWRQAAAAAAASPASMGGVGSGVVGQVRRGFRDGFSSSSSEASAHRGVPQGGAARGDRVGGTRASRRNRNSGGGAAQDGDRGRDHLEDVNEGGGGSNGLLAVGLPSGLSLGLGGGAEASSTGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPTGVETNPPEELLRALVGARVTIALLLLLMCHYIVTHVVGIASFSMGTAIVVVLDQRLWSHSGAQRRVNAVVEMAFVLYRCLLPAPVWLEFYGKDSDYFAGIYLVLKVM 1131
DTDTEVDEVNDDNIGPLLAAQPDLPTTAAA ATAAVPSPSER AAACLPHATGAHEQ XXX GPTG SDANGATLARLVSTWGPVTSQDGWRQAAAAAAASPASMGGVGSGVVGQVRRGFRDGFSSSSSE SAHRGVPQGGAARGDRVGGTRAS NRNSGGG AQDGDRGRDHLEDV+EGGGGSNGLLAVGLPSGLSLGLGGGAEAS TG+S XXXXXXXXXXXXXXXXXXXXXXXXXX VETNPPEELLRALVGAR+TIALLLLLMCHYIVTH++GIA+FSMGTAIVVVLDQRLWSHSGAQRRVNAVVEMAFVLYRCLLPAPVWLEFYGKDSDYFAGIYLVLK M
Sbjct: 34 DTDTEVDEVNDDNIGPLLAAQPDLPTTAAATATAAVPSPSERAAAACLPHATGAHEQXXXXXXXXXXXXXXXXXXXSATGPTGGTGGIPRTPNSDANGATLARLVSTWGPVTSQDGWRQAAAAAAASPASMGGVGSGVVGQVRRGFRDGFSSSSSETSAHRGVPQGGAARGDRVGGTRASTTNRNSGGGGAQDGDRGRDHLEDVSEGGGGSNGLLAVGLPSGLSLGLGGGAEASLTGMSNXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XVETNPPEELLRALVGARITIALLLLLMCHYIVTHLLGIAAFSMGTAIVVVLDQRLWSHSGAQRRVNAVVEMAFVLYRCLLPAPVWLEFYGKDSDYFAGIYLVLKGM 408
BLAST of mRNA_Ecto-sp9_F_contig11595.1341.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8S9_9PHAE) HSP 1 Score: 332 bits (851), Expect = 8.150e-104 Identity = 238/338 (70.41%), Postives = 249/338 (73.67%), Query Frame = 1
Query: 22 EVNDDNIGPLLAAQPDLPTTAAAAATAAVPSPSERTAAACLPHATGAHEQQQLPQQVPSGGRRSAAXXXXXAGPTGXXXXXXXXXXSDANGATLARLVSTWGPVTSQDGWRQAAAAAAASPASMGGVGSGVVGQVRRGFRDGFSSSSSEASAHRGVPQGGAARGDRVGGTRASRRNRNSGGGAAQDGDRGRDHLEDVNEGGGGSNGLLAVGLPSGLSLGLGGGAEASSTGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXSSP-----TGVETNPPEELLRALVGARVTIALLLLLMCHYIVTHVVGIASFSMGTAIVVVLDQRLWSHSGAQRRVNAVV 1020
EVN DN GPLLAAQPDLPTTA XXXXX GPTG S+ANGATLARLVSTWGPVTSQD WRQAA AAA SPASMGG GSGVVGQV+RGFRDGF+S+SSEASAHRGVPQGG ARGDRVGGTRASRRNRNSGGG AQDGDRG DHLE V+EGGGGSNGLL VGLPSGLSLGL GGAEAS TGLS XXXXXXXXXXXXXXXXXX SSP +GVE NPPEELLRALVGAR+TIALL+LLMCHYIVTH+VGIA+FSMGTAIVVVLDQRLWSH+GAQ N V
Sbjct: 15 EVNHDNTGPLLAAQPDLPTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPTGGAGGIPRTPNSEANGATLARLVSTWGPVTSQDEWRQAAVAAA-SPASMGGGGSGVVGQVQRGFRDGFNSNSSEASAHRGVPQGGVARGDRVGGTRASRRNRNSGGGGAQDGDRGGDHLEAVHEGGGGSNGLLTVGLPSGLSLGLNGGAEASLTGLSNNSGGXXXXXXXXXXXXXXXXXXDED-SSPGVPLESGVEGNPPEELLRALVGARITIALLVLLMCHYIVTHLVGIAAFSMGTAIVVVLDQRLWSHAGAQTLRNRFV 350
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 528.9 |
| Seed ortholog evalue | 2e-147 |
| Seed eggNOG ortholog | 2880.D7FJ26 |
| KEGG ko | ko:K22379 |
| GOs | GO:0003674,GO:0005488,GO:0008270,GO:0043167,GO:0043169,GO:0046872,GO:0046914 |
| EggNOG free text desc. | protein polyubiquitination |
| EggNOG OGs | COG5243@1,KOG0802@2759 |
| Ec32 ortholog description | Zinc finger, RING/FYVE/PHD-type |
| Ec32 ortholog | Ec-07_004640.2 |
| EC | 2.3.2.27 |
| COG Functional cat. | O |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko04121 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1134 |
| Cds size | 1134 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622928415.9911027-CDS-Ecto-sp9_F_contig11595:107..242 | 1622928415.9911027-CDS-Ecto-sp9_F_contig11595:107..242 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig11595 108..242 - |
| 1692277863.3690696-CDS-Ecto-sp9_F_contig11595:107..242 | 1692277863.3690696-CDS-Ecto-sp9_F_contig11595:107..242 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig11595 108..242 - |
| 1622928416.0043771-CDS-Ecto-sp9_F_contig11595:2603..2794 | 1622928416.0043771-CDS-Ecto-sp9_F_contig11595:2603..2794 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig11595 2604..2794 - |
| 1692277863.3858163-CDS-Ecto-sp9_F_contig11595:2603..2794 | 1692277863.3858163-CDS-Ecto-sp9_F_contig11595:2603..2794 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig11595 2604..2794 - |
| 1622928416.0148382-CDS-Ecto-sp9_F_contig11595:2961..3769 | 1622928416.0148382-CDS-Ecto-sp9_F_contig11595:2961..3769 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig11595 2962..3769 - |
| 1692277863.3978014-CDS-Ecto-sp9_F_contig11595:2961..3769 | 1692277863.3978014-CDS-Ecto-sp9_F_contig11595:2961..3769 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig11595 2962..3769 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11595.1341.1 >prot_Ecto-sp9_F_contig11595.1341.1 ID=prot_Ecto-sp9_F_contig11595.1341.1|Name=mRNA_Ecto-sp9_F_contig11595.1341.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=378bp
DTDTEVDEVNDDNIGPLLAAQPDLPTTAAAAATAAVPSPSERTAAACLPH ATGAHEQQQLPQQVPSGGRRSAASSSSSAGPTGGTGGTPRTPNSDANGAT LARLVSTWGPVTSQDGWRQAAAAAAASPASMGGVGSGVVGQVRRGFRDGF SSSSSEASAHRGVPQGGAARGDRVGGTRASRRNRNSGGGAAQDGDRGRDH LEDVNEGGGGSNGLLAVGLPSGLSLGLGGGAEASSTGLSNNSGGGGGGGG VGEPSSSGSSDSSDEDSSPTGVETNPPEELLRALVGARVTIALLLLLMCH YIVTHVVGIASFSMGTAIVVVLDQRLWSHSGAQRRVNAVVEMAFVLYRCL LPAPVWLEFYGKDSDYFAGIYLVLKVM* back to topmRNA from alignment at Ecto-sp9_F_contig11595:108..3769- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp9_F_contig11595.1341.1 ID=mRNA_Ecto-sp9_F_contig11595.1341.1|Name=mRNA_Ecto-sp9_F_contig11595.1341.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3662bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11595:108..3769- (Ectocarpus species9 EcSCA_722f female) GATACCGACACGGAGGTAGACGAGGTCAACGACGACAACATCGGCCCTCT
CCTGGCAGCCCAACCTGACCTCCCTACAACAGCGGCGGCAGCAGCAACAG
CAGCAGTGCCATCACCGAGCGAAAGGACCGCGGCGGCCTGCTTGCCGCAC
GCGACCGGCGCCCACGAACAGCAGCAGCTTCCGCAGCAGGTTCCAAGTGG
CGGCAGAAGAAGTGCTGCTTCTTCTTCTTCTTCCGCTGGACCAACTGGTG
GCACCGGCGGCACTCCTCGCACCCCGAACTCCGACGCTAACGGTGCTACG
CTCGCGCGACTAGTGTCCACATGGGGGCCGGTGACGTCCCAGGACGGGTG
GCGACAGGCCGCCGCCGCCGCTGCCGCAAGCCCTGCCTCGATGGGTGGTG
TCGGCAGTGGTGTTGTGGGCCAAGTCCGGCGTGGGTTTCGGGATGGATTT
AGTAGCAGTAGTAGTGAAGCTTCTGCTCATCGTGGCGTCCCGCAAGGCGG
AGCAGCAAGAGGAGATCGCGTTGGCGGCACACGAGCCAGCAGAAGGAATA
GGAACTCCGGAGGGGGGGCTGCGCAAGACGGGGACAGGGGCAGGGATCAT
CTCGAGGACGTAAATGAGGGCGGGGGCGGCAGCAATGGTTTATTGGCGGT
GGGCTTGCCTTCGGGCTTGAGTTTGGGCTTGGGTGGAGGGGCTGAAGCGA
GCTCAACCGGGCTGAGCAACAACAGCGGCGGCGGCGGCGGCGGCGGCGGC
GTGGGAGAGCCGAGTAGCTCGGGCTCTTCGGACAGCAGCGATGAGGATTC
TTCTCCCAGTGGTGAGAGAATCTTGTCGTATCATAGCCTGACCACTCACG
CCTGCACCTTTCTTTCCATGCCTGTCCCTGGGTCTCGTTATGGGATGGCG
GTGCCTAGTGACAATTCCAACGTTTCTTGTGCTGGTGGCTCCCTGCGCTT
TGCTCTGCTCTATTTTTGCTGGAAGCAGGGGTGGAGACTAACCCGCCTGA
GGAACTGTTGAGAGCTCTCGTCGGCGCTCGCGTCACGATCGCCCTGTTAC
TGCTGCTCATGTGTCACTACATCGTGACGCACGTCGTGGGCATCGCTTCT
TTCAGCATGGGCACAGCTATCGTTGTGGTGTTGGACCAACGACTCTGGTC
CCACTCTGGCGCACAGGTGCGCGTACTAGTCCTGATGGTCCGTCTCGGGT
TCTATTTAGAACAAAAGTTTACCCTCTCTCTTGTCCTTACCCCGTAGTCA
GAGAAACGTTTCTGAACCGGTTTGAAACTCTCGAAATTTCCGCCGACACT
GCTGTTGGCACTGCTTTCCTCTCCTCGTGCGCAGGGCGAGTTTCCCGGCT
GTAGGCTGGTACTTGTTCCGCGTTTCGATGATTAAGATGTAGACAAACAA
CAATTGCGGGCCTAAAATATATCTAACCCCCGGACGTGACGCTGCCCCCC
CCCCCCCCACCCCCTGCTCATCCGTACAGACCCTAAGGAATAGGTTTGTG
CTTTTGGGCGTGGCAGTGACAGCAGTGGTCGTTGTTGCCCTGTCGGCGAC
GGTCCTCAGCAACTTTCCAGAAGGAGGTACGGAAGCCGATTCGCCATCTC
CCTTGTTCTGTGCATTAACAATTACTATCTAGGTCTATTAGGTTAAGTGC
CAACCCGTGCGCGTTTTCTGTGGCTCGCCCGAAAAAATTGATTGGGAAGA
GGAAGACTCGACACGCGGCCGTTCATTTTGCGTTTGCAGCTGGTGAGGTA
AAACTAAACAGTGCGCTTGACCACTGCCTTTTGATGCGTGGGCGAAGGGT
GCGTGCCGGTATGTACCACACGAGACCCTGAACGTGCATTTCCTTGCCCG
ATTTCAACCGGCCCCCCTTTTCCCCGCAACCTTCGACCTCTCTGTCTCTG
GCCGACCCCACGCCACCCGACCCGACGTCACGAAAACCACAAACTATCGG
CCGGTAACGGCGACGACGAACTCCTCCACACGACCAAAGAGGGGCTGCTT
CGAAGGCTGCTCTTGGTGGCTCCGAAGCCGCCGGCCCTGGGCACCGTCTC
CGCCGTGATCCGCACCACGATCGTGGTGGACATCTGGGCCCGCCTCCTGA
GCGTGACGGTCAAGGCCGTCCTGGCCGTCGTCTCCGTGCCCGATCGCGAC
AGCAGCGGTAACGGTAGCAGCAGCGGCAGCAGCGGCAGCAGCAGCAGTGG
TACTATCAGCAGTGGCGGTGGCGGCGGTGGCGGGAGGGTCAGCCGGCACG
GCACTGGGCTGTTCGCCAGGGTGCGGTCCGCGGCCTCGTACCGCTTCCGC
CGCCGCTTCGGCATCCGGGCAGGCGGCAGGGCGGAAGGGAGCGGGGGGGG
AGGGCACAGCAGAGAGTCCCCGCACCCGCGGGCGGCGGCGCGGAGCTCAT
CGTTTGACGCCAACGAAAGCAGTGGTGGCGGCGGCAGCGGTATCAGCAGC
AGCGGCAGTGATGCCGGCGGCGGCGGAGGAGGAGGCCGGCTATCGAGCGG
CGCGCGGCGTGCGTGGAGGAGCTGGTTGTGCTGCTCGGAGAGGTTCTGCG
GCGGGCCGTACCGGTTCGAGGGGAGGGGGCGGTACAACGTCGTTGGCGGG
CAGAACGACGGGCGGCATTCGGCATCAGGGGGCGCCGGGGTCGAGGCGGG
GGGGGGCGACGGGGGGGGGGCCGGGACGGTGGCCTTCCTCAGCCGGGCCG
CTAGACTGGTGAGGCACGGGGCTGAATTCGGCGTGACGGGGAGGACGAGA
AAGGCTTCTTCGCGCGGCGAAGTTCTGCCGGTTGGCACCAGAATGCTGCT
TCCGATAAACTTTTCAGATGAACCACGCAGAGCGCGTGATTTGTCGAAAT
ATAATCTAAGTACAACATACTTACGCGTCTAATTCGGCTGCTGGGGCATC
ACAGAGTTGGGGTGGTACAGCTGTGCTGTTTGAAGCCAAGTCTGCCTGCG
GCAAAGAGCATGGTGTTTTTGCGGGCATGAGCGCGGGTCCCGTTTTCCGG
TTCTTCATCCAGTTGAGCACACGCCCAAAGTTGCATGCATTGTCCCGCTC
GTTGAACGTTGCCCGTAGGCAGATAGACTTCGCTTGCCTGGGAAAAGGGA
TCTCCTGTAGGTGCGAATGCTTTCGACGAAGGTCTCTCCGCGTGTCACTG
GCCGTAGAGAATGGCGACTCGACGCGAGACTACCCTGTGGAGCCCCACTG
GTCCTCTCTCTTTGTTCCACCCCCACCTCCTCTCAGAGAAGCGAGTCTTG
TATCTAAGCTTGCTCATCACGGTAGCCGCTCCCTTCTTCCCGAGAGCATT
CGTTCTCCAATAGTCGGGTGTCGAAGTCAAACAACGTGCACCCCCCCCTC
CTCGTCATGCCCCGACTCGATGTGTCCCCCACTGGGCTTTGGAGAGACAG
ATTGTCCTGTCATGAAATACGCCCCGTGTATTGGACACTGGAGGCGAGCC
ACGATGAAGGGTACCACCGCGCGGTCAACGCTTGCTGACGCCCAACCTCA
TGCTTTTACCTCACGCGCTTTTCGCAGCGGAGGGTGAACGCGGTCGTGGA
GATGGCGTTCGTGCTCTACCGGTGCCTTTTGCCGGCACCTGTCTGGCTGG
AGTTTTACGGCAAGGACAGCGACTACTTCGCGGGGATTTATCTCGTCCTC
AAGGTGATGTGA back to topCoding sequence (CDS) from alignment at Ecto-sp9_F_contig11595:108..3769- >mRNA_Ecto-sp9_F_contig11595.1341.1 ID=mRNA_Ecto-sp9_F_contig11595.1341.1|Name=mRNA_Ecto-sp9_F_contig11595.1341.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2268bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11595:108..3769- (Ectocarpus species9 EcSCA_722f female) GATACCGACACGGAGGTAGACGAGGTCAACGACGACAACATCGGCCCTCT CCTGGCAGCCCAACCTGACCTCCCTACAACAGCGGCGGCAGCAGCAACAG CAGCAGTGCCATCACCGAGCGAAAGGACCGCGGCGGCCTGCTTGCCGCAC GCGACCGGCGCCCACGAACAGCAGCAGCTTCCGCAGCAGGTTCCAAGTGG CGGCAGAAGAAGTGCTGCTTCTTCTTCTTCTTCCGCTGGACCAACTGGTG GCACCGGCGGCACTCCTCGCACCCCGAACTCCGACGCTAACGGTGCTACG CTCGCGCGACTAGTGTCCACATGGGGGCCGGTGACGTCCCAGGACGGGTG GCGACAGGCCGCCGCCGCCGCTGCCGCAAGCCCTGCCTCGATGGGTGGTG TCGGCAGTGGTGTTGTGGGCCAAGTCCGGCGTGGGTTTCGGGATGGATTT AGTAGCAGTAGTAGTGAAGCTTCTGCTCATCGTGGCGTCCCGCAAGGCGG AGCAGCAAGAGGAGATCGCGTTGGCGGCACACGAGCCAGCAGAAGGAATA GGAACTCCGGAGGGGGGGCTGCGCAAGACGGGGACAGGGGCAGGGATCAT CTCGAGGACGTAAATGAGGGCGGGGGCGGCAGCAATGGTTTATTGGCGGT GGGCTTGCCTTCGGGCTTGAGTTTGGGCTTGGGTGGAGGGGCTGAAGCGA GCTCAACCGGGCTGAGCAACAACAGCGGCGGCGGCGGCGGCGGCGGCGGC GTGGGAGAGCCGAGTAGCTCGGGCTCTTCGGACAGCAGCGATGAGGATTC TTCTCCCAGATACCGACACGGAGGTAGACGAGGTCAACGACGACAACATC GGCCCTCTCCTGGCAGCCCAACCTGACCTCCCTACAACAGCGGCGGCAGC AGCAACAGCAGCAGTGCCATCACCGAGCGAAAGGACCGCGGCGGCCTGCT TGCCGCACGCGACCGGCGCCCACGAACAGCAGCAGCTTCCGCAGCAGGTT CCAAGTGGCGGCAGAAGAAGTGCTGCTTCTTCTTCTTCTTCCGCTGGACC AACTGGTGGCACCGGCGGCACTCCTCGCACCCCGAACTCCGACGCTAACG GTGCTACGCTCGCGCGACTAGTGTCCACATGGGGGCCGGTGACGTCCCAG GACGGGTGGCGACAGGCCGCCGCCGCCGCTGCCGCAAGCCCTGCCTCGAT GGGTGGTGTCGGCAGTGGTGTTGTGGGCCAAGTCCGGCGTGGGTTTCGGG ATGGATTTAGTAGCAGTAGTAGTGAAGCTTCTGCTCATCGTGGCGTCCCG CAAGGCGGAGCAGCAAGAGGAGATCGCGTTGGCGGCACACGAGCCAGCAG AAGGAATAGGAACTCCGGAGGGGGGGCTGCGCAAGACGGGGACAGGGGCA GGGATCATCTCGAGGACGTAAATGAGGGCGGGGGCGGCAGCAATGGTTTA TTGGCGGTGGGCTTGCCTTCGGGCTTGAGTTTGGGCTTGGGTGGAGGGGC TGAAGCGAGCTCAACCGGGCTGAGCAACAACAGCGGCGGCGGCGGCGGCG GCGGCGGCGTGGGAGAGCCGAGTAGCTCGGGCTCTTCGGACAGCAGCGAT GAGGATTCTTCTCCCACAGGGGTGGAGACTAACCCGCCTGAGGAACTGTT GAGAGCTCTCGTCGGCGCTCGCGTCACGATCGCCCTGTTACTGCTGCTCA TGTGTCACTACATCGTGACGCACGTCGTGGGCATCGCTTCTTTCAGCATG GGCACAGCTATCGTTGTGGTGTTGGACCAACGACTCTGGTCCCACTCTGG CGCACAGCAGGGGTGGAGACTAACCCGCCTGAGGAACTGTTGAGAGCTCT CGTCGGCGCTCGCGTCACGATCGCCCTGTTACTGCTGCTCATGTGTCACT ACATCGTGACGCACGTCGTGGGCATCGCTTCTTTCAGCATGGGCACAGCT ATCGTTGTGGTGTTGGACCAACGACTCTGGTCCCACTCTGGCGCACAGCG GAGGGTGAACGCGGTCGTGGAGATGGCGTTCGTGCTCTACCGGTGCCTTT TGCCGGCACCTGTCTGGCTGGAGTTTTACGGCAAGGACAGCGACTACTTC GCGGGGATTTATCTCGTCCTCAAGGTGATGTGACGGAGGGTGAACGCGGT CGTGGAGATGGCGTTCGTGCTCTACCGGTGCCTTTTGCCGGCACCTGTCT GGCTGGAGTTTTACGGCAAGGACAGCGACTACTTCGCGGGGATTTATCTC GTCCTCAAGGTGATGTGA back to top
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