prot_Ecto-sp9_F_contig11595.1341.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig11595.1341.1
Unique Name	prot_Ecto-sp9_F_contig11595.1341.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	378

Homology

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BLAST of mRNA_Ecto-sp9_F_contig11595.1341.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ26_ECTSI)

HSP 1 Score: 523 bits (1347), Expect = 8.510e-182
Identity = 328/377 (87.00%), Postives = 334/377 (88.59%), Query Frame = 0

Query:    1 DTDTEVDEVNDDNIGPLLAAQPDLPTTAAAAATAAVPSPSERTAAACLPHATGAHEQQQLPQQVPSGGRRSAAXXXXXAGPTGXXXXXXXXXXSDANGATLARLVSTWGPVTSQDGWRQAAAAAAASPASMGGVGSGVVGQVRRGFRDGFSSSSSEASAHRGVPQGGAARGDRVGGTRASRRNRNSGGGAAQDGDRGRDHLEDVNEGGGGSNGLLAVGLPSGLSLGLGGGAEASSTGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPTGVETNPPEELLRALVGARVTIALLLLLMCHYIVTHVVGIASFSMGTAIVVVLDQRLWSHSGAQRRVNAVVEMAFVLYRCLLPAPVWLEFYGKDSDYFAGIYLVLKVM 377
            DTDTEVDEVNDDNIGPLLAAQPDLPTTAAA ATAAVPSPSER AAACLPHATGAHEQ                XXX   GPTG          SDANGATLARLVSTWGPVTSQDGWRQAAAAAAASPASMGGVGSGVVGQVRRGFRDGFSSSSSE SAHRGVPQGGAARGDRVGGTRAS  NRNSGGG AQDGDRGRDHLEDV+EGGGGSNGLLAVGLPSGLSLGLGGGAEAS TG+S XXXXXXXXXXXXXXXXXXXXXXXXXX     VETNPPEELLRALVGAR+TIALLLLLMCHYIVTH++GIA+FSMGTAIVVVLDQRLWSHSGAQRRVNAVVEMAFVLYRCLLPAPVWLEFYGKDSDYFAGIYLVLK M
Sbjct:   34 DTDTEVDEVNDDNIGPLLAAQPDLPTTAAATATAAVPSPSERAAAACLPHATGAHEQXXXXXXXXXXXXXXXXXXXSATGPTGGTGGIPRTPNSDANGATLARLVSTWGPVTSQDGWRQAAAAAAASPASMGGVGSGVVGQVRRGFRDGFSSSSSETSAHRGVPQGGAARGDRVGGTRASTTNRNSGGGGAQDGDRGRDHLEDVSEGGGGSNGLLAVGLPSGLSLGLGGGAEASLTGMSNXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XVETNPPEELLRALVGARITIALLLLLMCHYIVTHLLGIAAFSMGTAIVVVLDQRLWSHSGAQRRVNAVVEMAFVLYRCLLPAPVWLEFYGKDSDYFAGIYLVLKGM 408

[Close]

BLAST of mRNA_Ecto-sp9_F_contig11595.1341.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8S9_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 8.150e-104
Identity = 238/338 (70.41%), Postives = 249/338 (73.67%), Query Frame = 0

Query:    8 EVNDDNIGPLLAAQPDLPTTAAAAATAAVPSPSERTAAACLPHATGAHEQQQLPQQVPSGGRRSAAXXXXXAGPTGXXXXXXXXXXSDANGATLARLVSTWGPVTSQDGWRQAAAAAAASPASMGGVGSGVVGQVRRGFRDGFSSSSSEASAHRGVPQGGAARGDRVGGTRASRRNRNSGGGAAQDGDRGRDHLEDVNEGGGGSNGLLAVGLPSGLSLGLGGGAEASSTGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXSSP-----TGVETNPPEELLRALVGARVTIALLLLLMCHYIVTHVVGIASFSMGTAIVVVLDQRLWSHSGAQRRVNAVV 340
            EVN DN GPLLAAQPDLPTTA                                             XXXXX GPTG          S+ANGATLARLVSTWGPVTSQD WRQAA AAA SPASMGG GSGVVGQV+RGFRDGF+S+SSEASAHRGVPQGG ARGDRVGGTRASRRNRNSGGG AQDGDRG DHLE V+EGGGGSNGLL VGLPSGLSLGL GGAEAS TGLS     XXXXXXXXXXXXXXXXXX    SSP     +GVE NPPEELLRALVGAR+TIALL+LLMCHYIVTH+VGIA+FSMGTAIVVVLDQRLWSH+GAQ   N  V
Sbjct:   15 EVNHDNTGPLLAAQPDLPTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPTGGAGGIPRTPNSEANGATLARLVSTWGPVTSQDEWRQAAVAAA-SPASMGGGGSGVVGQVQRGFRDGFNSNSSEASAHRGVPQGGVARGDRVGGTRASRRNRNSGGGGAQDGDRGGDHLEAVHEGGGGSNGLLTVGLPSGLSLGLNGGAEASLTGLSNNSGGXXXXXXXXXXXXXXXXXXDED-SSPGVPLESGVEGNPPEELLRALVGARITIALLVLLMCHYIVTHLVGIAAFSMGTAIVVVLDQRLWSHAGAQTLRNRFV 350

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig11595.1341.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig11595.1341.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
RING-type	8.510e-182	87.00	domain-containing protein n=1 Tax=Ectocarpus silic...	[more]
RING-type	8.150e-104	70.41	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 358..377
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 304..308
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..284
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 328..338
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 309..327
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 285..303
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 339..357
None	No IPR available	TMHMM	TMhelix		coord: 300..322
None	No IPR available	TMHMM	TMhelix		coord: 335..357

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig11595	contig	Ecto-sp9_F_contig11595:108..3769 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig11595.1341.1	mRNA_Ecto-sp9_F_contig11595.1341.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig11595 108..3769 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig11595.1341.1 ID=prot_Ecto-sp9_F_contig11595.1341.1|Name=mRNA_Ecto-sp9_F_contig11595.1341.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=378bp
DTDTEVDEVNDDNIGPLLAAQPDLPTTAAAAATAAVPSPSERTAAACLPH
ATGAHEQQQLPQQVPSGGRRSAASSSSSAGPTGGTGGTPRTPNSDANGAT
LARLVSTWGPVTSQDGWRQAAAAAAASPASMGGVGSGVVGQVRRGFRDGF
SSSSSEASAHRGVPQGGAARGDRVGGTRASRRNRNSGGGAAQDGDRGRDH
LEDVNEGGGGSNGLLAVGLPSGLSLGLGGGAEASSTGLSNNSGGGGGGGG
VGEPSSSGSSDSSDEDSSPTGVETNPPEELLRALVGARVTIALLLLLMCH
YIVTHVVGIASFSMGTAIVVVLDQRLWSHSGAQRRVNAVVEMAFVLYRCL
LPAPVWLEFYGKDSDYFAGIYLVLKVM*