mRNA_Ecto-sp9_F_contig1126.1082.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1126.1082.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK7_ECTSI) HSP 1 Score: 689 bits (1779), Expect = 2.670e-235 Identity = 407/476 (85.50%), Postives = 416/476 (87.39%), Query Frame = 1
Query: 1 MLVKAGMMAVISLRATGADDVSGSXXXXXXXXXXXNPPPEKNGRGEMRRPPGLVAPGEGVINNHPPGLVVPRGGDGVGDCRESGYREPLMSPLREAMEVSLGGKRVKMMVSTHPPPTRPEDVGHGGRTDWGCPPKPQQRQTSPPHTGTKNTEAAREAAAREGCGRAVGCLTVAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----NAGHGNRKPLTISVLQHTADAMQKQEVPVRADRLLSLPWTTVAXXXXXXXXXXXGGDAGVDCAPPLQAGEQSATSIRRRVEALQPRKLREEKVLCVFMRYRLEISAENLRGLDRVILASEARRAVVNAEVKAATEAFRRDVAEANRFRLEAEACKAALAEVAVIPPVPVNSIARGVYGDWFHGREFNRFVDKTRERYGDGSDKLFVATDVVSQQHRTRNGGEGGSVWAVGVKELGQGTFGVVTRLDVLTLGKSYAAKEFKDVSE 1413
MLVKAGMMAVIS RA GADDVSGSXXXXXXXXXXXNPPPEKNGRGEMRRPPGLVAPGEGV NNHP VPR GDGVGDCRESGYR PLMSPLREA+EVSLGG+RVKMMVST P TRPEDVGHG TDWGCPPKPQQRQTSPP TGTK+TEAAREAAAREGCGRAVGCLT XXXXXXXXXXXXXXXXXX X NAGHG+RKP TI VLQHTADAMQKQEVPVRADRLLSLP TVA XXX GGDAGVDC PPLQAGEQSATSIRRRV+ALQ RKLREEKVLCVFMRYRLEISA+NLRGLD VILASEARRAVVNAEVKAATE FRRD+AEANRFRLEAEACKAALAEVAVIP VP NSIARGVYGDWFHGREF RFV KTRERYGDGSD+LFVATDVVSQQHR RNGGEGGSVWAVGVKELGQGTFG+VTRLDVLTLGKSYAAKEFKD E
Sbjct: 1 MLVKAGMMAVISPRAMGADDVSGSXXXXXXXXXXXNPPPEKNGRGEMRRPPGLVAPGEGVTNNHPXXXXVPRRGDGVGDCRESGYRGPLMSPLREAVEVSLGGRRVKMMVSTQTPSTRPEDVGHGRGTDWGCPPKPQQRQTSPPQTGTKSTEAAREAAAREGCGRAVGCLTXXXXXXXXXXXXXXXXXXXXXXXGAFCAGGGFSDNXXTGCGNAGHGDRKPPTIPVLQHTADAMQKQEVPVRADRLLSLPRATVAAAAXXXAAS--GGDAGVDCVPPLQAGEQSATSIRRRVDALQSRKLREEKVLCVFMRYRLEISADNLRGLDCVILASEARRAVVNAEVKAATEVFRRDMAEANRFRLEAEACKAALAEVAVIPSVPANSIARGVYGDWFHGREFKRFVAKTRERYGDGSDELFVATDVVSQQHRARNGGEGGSVWAVGVKELGQGTFGIVTRLDVLTLGKSYAAKEFKDQGE 474
BLAST of mRNA_Ecto-sp9_F_contig1126.1082.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHN5_9PHAE) HSP 1 Score: 683 bits (1762), Expect = 1.390e-232 Identity = 407/471 (86.41%), Postives = 423/471 (89.81%), Query Frame = 1
Query: 1 MLVKAGMMAVISLRATGADDVSGSXXXXXXXXXXXNPPPEKNGRGEMRRPPGLVAPGEGVINNHPPGLVVPRGGDGVGDCRESGYREPLMSPLREAMEVSLGGKRVKMMVSTHPPPTRPEDVGHGGRTDWGCPPKPQQRQTSPPHTGTKNTEAAREAAAREGCGRAVGCLTVAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--NAGHGNRKPLTISVLQHTADAMQKQEVPVRADRLLSLPWTTVAXXXXXXXXXXXGGDAGVDCAPPLQAGEQSATSIRRRVEALQPRKLREEKVLCVFMRYRLEISAENLRGLDRVILASEARRAVVNAEVKAATEAFRRDVAEANRFRLEAEACKAALAEVAVIPPVPVNSIARGVYGDWFHGREFNRFVDKTRERYGDGSDKLFVATDVVSQQHRTRNGGEGGSVWAVGVKELGQGTFGVVTRLDVLTLGKSYAAKEFKDV 1407
MLVKAG+MAV S RATGADD +GSXXXXXXXXXXX PPPE+NGRGEMRRP GLVAPGE V NNHPPGLVVPRGGDGV DCRE GYR LMSPLREA+ +S GG+RVKMM STHPP TRP+DVGHGGRTDWGCPPKPQ+RQTSPP TGTK+TEAA+EAAAR+GCGRAV LT AAGA XXXXXXXX XXXXXXXXXXXXXXXX NAGHG+RKP TI V QHTADAMQKQEV VRADRLLSLP TT A XXXXX GGDAGVDCAPP+Q GEQSATSIRRRVEALQ R LREEK LC FMRYRL ISAENLRGLDRVILASEARRAVVNAEVKAATEAFRRD+AEANRFRLEAEACKAALAEVAVIPPVP NSIARGVYGDWFHGRE+NRFVDKTRERYGDGSD+LFVATDVVSQQHRTRNGGEGGSVWAVGVK LGQGTFGVVTRLDVLTLGKSYAAKEFKDV
Sbjct: 1 MLVKAGIMAVTSPRATGADDETGSXXXXXXXXXXXKPPPERNGRGEMRRPSGLVAPGERVTNNHPPGLVVPRGGDGVDDCREGGYRGLLMSPLREAVAMSFGGRRVKMMASTHPPSTRPKDVGHGGRTDWGCPPKPQRRQTSPPQTGTKSTEAAKEAAARKGCGRAVSFLTAAAGAAGXXXXXXXXSDCXXXXXXXXXXXXXXXXTGGGNAGHGDRKPPTIPVHQHTADAMQKQEVSVRADRLLSLPRTTEAAAXXXXXAS--GGDAGVDCAPPMQVGEQSATSIRRRVEALQLRNLREEKFLCAFMRYRLNISAENLRGLDRVILASEARRAVVNAEVKAATEAFRRDIAEANRFRLEAEACKAALAEVAVIPPVPANSIARGVYGDWFHGREYNRFVDKTRERYGDGSDELFVATDVVSQQHRTRNGGEGGSVWAVGVKGLGQGTFGVVTRLDVLTLGKSYAAKEFKDV 469
BLAST of mRNA_Ecto-sp9_F_contig1126.1082.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWL9_ECTSI) HSP 1 Score: 649 bits (1674), Expect = 1.130e-219 Identity = 379/488 (77.66%), Postives = 391/488 (80.12%), Query Frame = 1
Query: 1 MLVKAGMMAVISLRATGADDVSGSXXXXXXXXXXXNPPPEKNGRGEMRRPPGLV-APGEGVINNHPPGLVVP---------------RGGDGVGDCRESGYREPLMSPLREAMEVSLGGKRVKMMVSTHPPPTRPEDVGHGGRTDWGCPPKPQQRQTSPPHTGTKNTEAAREAAAREGCGRAVGCLTVAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAGHGNRKPLTISVLQHTADAMQKQEVPVRADRLLSLPWTTVAXXXXXXXXXXXGGDAGVDCAPPLQAGEQSATSIRRRVEALQPRKLREEK-VLCVFMRYRLEISAENLRGLDRVILASEARRAVVNAEVKAATEAFRRDVAEANRFRLEAEACKAALAEVAVIPPVPVNSIARGVYGDWFHGREFNRFVDKTRERYGDGSDKLFVATDVVSQQHRTRNGGEGGSVWAVGVKELGQGTFGVVTRLDVLTLGKSYAAKEFKDVSE 1413
MLVKAGMMAVIS RAT ADD +GSXXXXXXXXXXXNPPPEK+GRGEMRRPPGLV APGEGV RGGDGVGDCRESGYR LMSPLREA+EVSLGG+RVKMMVSTHP TRPEDVGHGGRTDWG PPKPQ+RQ+SPP TGTKNTEAAREAAAREGCGRAVGCLTVAAGA NAGHG+RKP TI VLQHTADAMQKQEVPV+ADRLLSLP TVA GGDAGVDCA QAGEQSATSIRRRVEA Q RKLREE+ VLCV MRYRLEISAENLRGLDRVILASEARRAVVNAEVKAATE FRRD+AEANRFRLEAEACKAALAEVAVIP VP NSIARGVYGDWFHGREF RFV KTRERYGDGSD+LFVATDVVSQQHR RNGGEGGSVWAVGVKELGQGTFG+VTRLDVLTLGKSYAAKEFKD E
Sbjct: 1 MLVKAGMMAVISPRATVADDENGSXXXXXXXXXXXNPPPEKHGRGEMRRPPGLVVAPGEGVTXXXXXXXXXXXXXXXXXXXXXXXXXRGGDGVGDCRESGYRRSLMSPLREAVEVSLGGRRVKMMVSTHPLSTRPEDVGHGGRTDWGSPPKPQRRQSSPPQTGTKNTEAAREAAAREGCGRAVGCLTVAAGATPAGAAGAGGGDSFCAGGGFSDNRGTGCG--NAGHGDRKPPTIPVLQHTADAMQKQEVPVQADRLLSLPRATVAAAATAAS----GGDAGVDCA---QAGEQSATSIRRRVEAPQIRKLREERRVLCVLMRYRLEISAENLRGLDRVILASEARRAVVNAEVKAATEVFRRDMAEANRFRLEAEACKAALAEVAVIPSVPANSIARGVYGDWFHGREFKRFVAKTRERYGDGSDELFVATDVVSQQHRARNGGEGGSVWAVGVKELGQGTFGIVTRLDVLTLGKSYAAKEFKDQGE 479
BLAST of mRNA_Ecto-sp9_F_contig1126.1082.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Q4_9PHAE) HSP 1 Score: 604 bits (1558), Expect = 7.930e-213 Identity = 378/476 (79.41%), Postives = 397/476 (83.40%), Query Frame = 1
Query: 1 MLVKAGMMAVISLRATGADDVSGSXXXXXXXXXXXNPPPEKNGRGEMRRPPGLVAPGEGVINNHPPGLVVPRGGDGVGDCRESGYREPLMSPLREAMEVSLGGKRVKMMVSTHPPPTRPEDVGHGGRTDWGCPPKPQQRQTSPPHTGTKNTEAAREAAAREGCGRAVGCLTVAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAGHGNRKPLTISVLQHTADAMQKQEVPVRADRLLSLPWTTVAXXXXXXXXXXXG----GDAGVDCAPPLQAGEQSATSIRRRVEALQPRKLREEKVLCVFMRYRLEISAENLRGLDRVILASEARRAVVNAEVKAATEAFRRDVAEANRFRLEAEACKAALAEVAVIPPVPVNSIARGVYGDWFHGREFNRFVDKTRERYGDGSDKLFVATDVVSQQHRTRNGGEGGSVWAVGVKELGQGTFGVVTRLDVLTLGKSYAAKEFKDVSEP 1416
M+VKA MMA+IS ATG D+ SG NPPPEKNGRGEMRRPPGLVAPGE + NNHP GLVVPRGGDG GDCRESG R PLMSPLREA+ +S GG+RVKMMV THPP TRPEDVGHGGRTDWGCPP+ QQRQT+ P TGTK+TEAARE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NRKP TI +L+ +AM Q VP RADRLLSLP T AXXXXXXXXXXX GD GVDCAPPLQAGEQSAT+IRR+VE Q RKLREEK LCVFMRYRL ISAENLRGLDRVILASEARRAVVNAEVKAATEAFRRD+AEANRFRLEAEACKAALAEVAVIPPVP NSIARGVYGDWFHGRE+NRFVDKTRERYGDGSD+LFVATDVVSQQHRTRNGGEGGSVWAVGVKELGQGTFGVVTRLDVLTLGKSYAAKEFKDVS+P
Sbjct: 1 MMVKAAMMALISPGATGTDERSGGRCSGSGSGFG-NPPPEKNGRGEMRRPPGLVAPGERLTNNHPCGLVVPRGGDGGGDCRESGCRGPLMSPLREAVAMSFGGRRVKMMVFTHPPSTRPEDVGHGGRTDWGCPPELQQRQTNLPQTGTKSTEAAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRKPPTIPLLRQE-EAMHMQHVPARADRLLSLPRATAAXXXXXXXXXXXTVAARGDTGVDCAPPLQAGEQSATAIRRKVETPQLRKLREEKFLCVFMRYRLIISAENLRGLDRVILASEARRAVVNAEVKAATEAFRRDIAEANRFRLEAEACKAALAEVAVIPPVPANSIARGVYGDWFHGREYNRFVDKTRERYGDGSDELFVATDVVSQQHRTRNGGEGGSVWAVGVKELGQGTFGVVTRLDVLTLGKSYAAKEFKDVSKP 474 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1126.1082.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1126.1082.1 >prot_Ecto-sp9_F_contig1126.1082.1 ID=prot_Ecto-sp9_F_contig1126.1082.1|Name=mRNA_Ecto-sp9_F_contig1126.1082.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=473bp MLVKAGMMAVISLRATGADDVSGSGGGSGSGSGFGNPPPEKNGRGEMRRPback to top mRNA from alignment at Ecto-sp9_F_contig1126:545..3684- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1126.1082.1 ID=mRNA_Ecto-sp9_F_contig1126.1082.1|Name=mRNA_Ecto-sp9_F_contig1126.1082.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3140bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1126:545..3684- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1126:545..3684- >mRNA_Ecto-sp9_F_contig1126.1082.1 ID=mRNA_Ecto-sp9_F_contig1126.1082.1|Name=mRNA_Ecto-sp9_F_contig1126.1082.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2838bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1126:545..3684- (Ectocarpus species9 EcSCA_722f female)back to top |