mRNA_Ecto-sp9_F_contig11218.1052.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11218.1052.1
Unique NamemRNA_Ecto-sp9_F_contig11218.1052.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11218.1052.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KA41_9PHAE)

HSP 1 Score: 297 bits (761), Expect = 1.270e-97
Identity = 182/221 (82.35%), Postives = 187/221 (84.62%), Query Frame = 1 
Query:    1 MIFFKPKEVAVVACTLLLAVGFTFRPASAFSAAVRPTALRSARHPAAFFSAHSSRPAAARPCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVAPGRAKKKVVKSVGVALAWYLASSAVAVAATAATGGAVRPRPQPRMRYTGLPILLMAYALSRGDLKKRTRLEGVVPRDPESVKLLADDAEDLAMSWGKPAGLMAYTSVDFIVFSFFSRYV 663
            MIFFK KEVAVVA TLLLAVGFTFRPASAFSAAVRPTALRSA HPAAFFSAHSS PAAARPCR                 XXXXXXXXXXXX      AVVAPGRAKK V+KS GVALAWYLASSAVA+AATAATGGA R RPQPRMRYTGLPILLMAYALSRGDLK+RTRLEGVVPRDPES+KLLADDAEDLAMSWGKPAGLMAYTSVD IVF F SR+V
Sbjct:    1 MIFFKRKEVAVVASTLLLAVGFTFRPASAFSAAVRPTALRSATHPAAFFSAHSSSPAAARPCRRRTAAECCNVLPMSNMVXXXXXXXXXXXXSSEEGKAVVAPGRAKK-VIKSAGVALAWYLASSAVALAATAATGGAARARPQPRMRYTGLPILLMAYALSRGDLKERTRLEGVVPRDPESIKLLADDAEDLAMSWGKPAGLMAYTSVDCIVFFFLSRWV 220
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11218.1052.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.270e-9782.35protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11218contigEcto-sp9_F_contig11218:254..2506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_003190.1
Exons3
Model size663
Cds size663
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11218.1052.1prot_Ecto-sp9_F_contig11218.1052.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11218 254..2506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928363.672956-CDS-Ecto-sp9_F_contig11218:253..4041622928363.672956-CDS-Ecto-sp9_F_contig11218:253..404Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11218 254..404 -
1692277847.3654091-CDS-Ecto-sp9_F_contig11218:253..4041692277847.3654091-CDS-Ecto-sp9_F_contig11218:253..404Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11218 254..404 -
1622928363.6859798-CDS-Ecto-sp9_F_contig11218:686..8741622928363.6859798-CDS-Ecto-sp9_F_contig11218:686..874Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11218 687..874 -
1692277847.3784935-CDS-Ecto-sp9_F_contig11218:686..8741692277847.3784935-CDS-Ecto-sp9_F_contig11218:686..874Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11218 687..874 -
1622928363.6982164-CDS-Ecto-sp9_F_contig11218:2182..25061622928363.6982164-CDS-Ecto-sp9_F_contig11218:2182..2506Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11218 2183..2506 -
1692277847.3864033-CDS-Ecto-sp9_F_contig11218:2182..25061692277847.3864033-CDS-Ecto-sp9_F_contig11218:2182..2506Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11218 2183..2506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11218.1052.1

>prot_Ecto-sp9_F_contig11218.1052.1 ID=prot_Ecto-sp9_F_contig11218.1052.1|Name=mRNA_Ecto-sp9_F_contig11218.1052.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=221bp
MIFFKPKEVAVVACTLLLAVGFTFRPASAFSAAVRPTALRSARHPAAFFS
AHSSRPAAARPCRRRTVAACCDVLPVNNMVMSAAAAGGRNDSSAEEDKAV
VAPGRAKKKVVKSVGVALAWYLASSAVAVAATAATGGAVRPRPQPRMRYT
GLPILLMAYALSRGDLKKRTRLEGVVPRDPESVKLLADDAEDLAMSWGKP
AGLMAYTSVDFIVFSFFSRYV
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mRNA from alignment at Ecto-sp9_F_contig11218:254..2506-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11218.1052.1 ID=mRNA_Ecto-sp9_F_contig11218.1052.1|Name=mRNA_Ecto-sp9_F_contig11218.1052.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2253bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11218:254..2506- (Ectocarpus species9 EcSCA_722f female)
ATGATTTTTTTCAAACCCAAAGAAGTTGCAGTTGTTGCCTGCACGCTGCT
CCTTGCTGTCGGCTTCACCTTCCGCCCAGCGAGCGCCTTCTCAGCAGCAG
TCCGCCCGACGGCGCTCCGCTCCGCGAGGCACCCGGCGGCTTTCTTCTCC
GCGCACTCCTCCCGTCCTGCCGCCGCCCGGCCATGCAGGCGCCGCACGGT
AGCAGCATGCTGTGATGTTCTGCCGGTGAACAACATGGTCATGTCAGCAG
CAGCAGCAGGCGGCCGGAATGATAGTTCAGCTGAGGAAGACAAGGCTGTT
GTTGCTCCAGGCAGGGCGAAGAAGGTGATGTGTTTGGGTGTGTTTTGGGC
AGTCTCTGTGTGCAATCGTGGTGTGCAATCTTTTGTGTGCAAAGAAAGGG
TGGAAGTTTACGTGTTCGTAGTAGCAAATGAGCGACTTTTTGATCTGCTC
AGGCTGCGGTACAACTTGCTTACAGCAGTACATTCAAACGAGCAGCTGCT
GCTGCTATCGATTGCGCCACCTGCACATTTAGATAGAAGCAGCATCAAGA
GATGAAGGAGCGCTTTCGTATCGATTCCCGCAACCGCCGGCGGACGGACA
TGTAGACTGCTGCTGTTGTAGCGCAAAATTGCTCCGAAAACCGAAAGCCC
TACCGGCGGTGTGATGTACAGCAACTACATACTTGTAGTACGTCTGGAGT
CTCCGCACGGGCTGTTGACGTAAGATGTCACACCCCCTGGATCCATTTTC
ACAGCTCTACAATATTTCTACTCCACGGCAAAGAGGGCGCATAACTCTAA
CCATTCCTCTTCGGACAGATCTCGACGAGACGGTTCCGGCGCCCGCCCGC
CCTTTTCGGCACCGCCACTCTTTTTTGGAGAAATCGAAACAGGCAATCCA
GGGGATTCGGTGCATGTCTCGTGTCATCATCTACGGTAACCACGTTGTTC
GCTTATCTCGCCGCTTGCGCCTCGGTGCTGTTATTGCGGGCATCGTGCCA
CGGCGGTGTGGCGACGCCGCGGAAATTCTGTGTCCTTTGTACGTAGTCGT
GGTTTACTGACTGCTGTAAGTGCCGCGTTCCGCTGTTGTTGTACCTTGAA
GGGCCGCCTGGGTGCCATAGATGGTCGAGCGAACCCGGCCGCCTGCCGTG
TGCATGATGCATGGCCGTCGCAACGGATCCTCGCCGGTGCAAACATGAAC
GCGCTTGTGGTCAAGACTCTCACCCAAGAATATCATGGAGTTGTAGCGTA
GGTGTATTGTTGCACGGAAGAACGTGCTAAATAACAATACCGGTATGCAA
CCCGCCAATAAATTAATACCATTGGGCGCGGTATGTGCCTTCGCTGGCGC
TTACGTGCCTCCTGTTTCTACCGCGGCAAGTGCGATGTTAATATTTGCTC
CTAGTTACGGATCTCATCTTGCTCTTTCCAGTCTCATCAATAGCATGCGA
CACGCGGCAGCGTGTGTGCTTCCCAAGAGAAGCATTGCTCATGATCCGCG
TGTGTGTGTGTGTTTCAACACCGACCTGTGTTCACCCCAAGAAACTCTTG
GAGGATCAGTGCCCGCCCCCCCCCCAAGACATGCACACCCCATTTTGGAC
GCTCGCTGCTCCCAAACATCCCGTCGCAAAAGAAGGTGGTTAAGTCCGTC
GGGGTCGCCCTGGCCTGGTACCTTGCGTCCTCCGCCGTCGCCGTGGCCGC
CACCGCCGCCACCGGTGGCGCCGTGAGACCCCGGCCGCAGCCTAGGATGA
GATACACGGGCCTGCCTATCCTGCTGATGGCCTACGCGTTGAGCAGGGGG
GACTTGAAGAAGAGGACCAGGTGCGTGCTCTTTTTTTTTTGTTCGTGTTG
TAGTAGCGAGTTTGTAAGCGTACGTGTTGGTAGCCAGCCTCGCCTAACCG
GATGTTCGATCGTGGGTCTTGCACGGGCTTTTCGTTTCTTCTCTGATTTT
TTTTTGTTTCTGGCTCTCTCTGTCGTTGCCTTGTTTTCTCACTCAGCCGT
GTACTATTACCAGACTGTCGTTTTTTCATTGGCCAGCGGTCGGTGCTAAC
TATAGACACACACCCGCCCACAACAACAAATATCTGCGTTGAAAAAAAAC
AGACTCGAAGGCGTTGTCCCCCGGGACCCGGAGTCTGTCAAGCTGCTGGC
GGACGATGCCGAGGACCTGGCCATGTCCTGGGGGAAGCCGGCTGGCCTGA
TGGCCTACACCTCCGTGGACTTTATTGTGTTCTCCTTCTTCTCCAGGTAT
GTT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11218:254..2506-

>mRNA_Ecto-sp9_F_contig11218.1052.1 ID=mRNA_Ecto-sp9_F_contig11218.1052.1|Name=mRNA_Ecto-sp9_F_contig11218.1052.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1326bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11218:254..2506- (Ectocarpus species9 EcSCA_722f female)
ATGATTTTTTTCAAACCCAAAGAAGTTGCAGTTGTTGCCTGCACGCTGCT
CCTTGCTGTCGGCTTCACCTTCCGCCCAGCGAGCGCCTTCTCAGCAGCAG
TCCGCCCGACGGCGCTCCGCTCCGCGAGGCACCCGGCGGCTTTCTTCTCC
GCGCACTCCTCCCGTCCTGCCGCCGCCCGGCCATGCAGGCGCCGCACGGT
AGCAGCATGCTGTGATGTTCTGCCGGTGAACAACATGGTCATGTCAGCAG
CAGCAGCAGGCGGCCGGAATGATAGTTCAGCTGAGGAAGACAAGGCTGTT
GTTGCTCCAGGCAGGGCGAAGAAGATGATTTTTTTCAAACCCAAAGAAGT
TGCAGTTGTTGCCTGCACGCTGCTCCTTGCTGTCGGCTTCACCTTCCGCC
CAGCGAGCGCCTTCTCAGCAGCAGTCCGCCCGACGGCGCTCCGCTCCGCG
AGGCACCCGGCGGCTTTCTTCTCCGCGCACTCCTCCCGTCCTGCCGCCGC
CCGGCCATGCAGGCGCCGCACGGTAGCAGCATGCTGTGATGTTCTGCCGG
TGAACAACATGGTCATGTCAGCAGCAGCAGCAGGCGGCCGGAATGATAGT
TCAGCTGAGGAAGACAAGGCTGTTGTTGCTCCAGGCAGGGCGAAGAAGAA
GGTGGTTAAGTCCGTCGGGGTCGCCCTGGCCTGGTACCTTGCGTCCTCCG
CCGTCGCCGTGGCCGCCACCGCCGCCACCGGTGGCGCCGTGAGACCCCGG
CCGCAGCCTAGGATGAGATACACGGGCCTGCCTATCCTGCTGATGGCCTA
CGCGTTGAGCAGGGGGGACTTGAAGAAGAGGACCAGAAGGTGGTTAAGTC
CGTCGGGGTCGCCCTGGCCTGGTACCTTGCGTCCTCCGCCGTCGCCGTGG
CCGCCACCGCCGCCACCGGTGGCGCCGTGAGACCCCGGCCGCAGCCTAGG
ATGAGATACACGGGCCTGCCTATCCTGCTGATGGCCTACGCGTTGAGCAG
GGGGGACTTGAAGAAGAGGACCAGACTCGAAGGCGTTGTCCCCCGGGACC
CGGAGTCTGTCAAGCTGCTGGCGGACGATGCCGAGGACCTGGCCATGTCC
TGGGGGAAGCCGGCTGGCCTGATGGCCTACACCTCCGTGGACTTTATTGT
GTTCTCCTTCTTCTCCAGGTATGTTACTCGAAGGCGTTGTCCCCCGGGAC
CCGGAGTCTGTCAAGCTGCTGGCGGACGATGCCGAGGACCTGGCCATGTC
CTGGGGGAAGCCGGCTGGCCTGATGGCCTACACCTCCGTGGACTTTATTG
TGTTCTCCTTCTTCTCCAGGTATGTT
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