mRNA_Ecto-sp9_F_contig1121.1043.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1121.1043.1
Unique NamemRNA_Ecto-sp9_F_contig1121.1043.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1121.1043.1 vs.
Match: BIG2, (ArfGEF protein of the BIG/GBF family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA1_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 7.810e-49
Identity = 98/124 (79.03%), Postives = 99/124 (79.84%), Query Frame = 1 
Query:    1 MESKSEDVVDAALGQLHKLIAGGLVRRNTMTTLKDGSSANLGEILVGVVMETGSRDKTVRRGGRAQAVRCLLSCVTSAEIEVHGEELRKVVLFVHETFLVIDSTANRARYNKAQARATLDHILQ 372
            M SKSEDVV+AALGQLHKLIAGGLVRRNTMTTLKDGSSANLGEILVGVVMETGSRDKTV                       HGEELRKV LFVHETFLVIDSTANRARYNKAQARATLDHILQ
Sbjct:   92 MGSKSEDVVEAALGQLHKLIAGGLVRRNTMTTLKDGSSANLGEILVGVVMETGSRDKTV-----------------------HGEELRKVALFVHETFLVIDSTANRARYNKAQARATLDHILQ 192
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1121.1043.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
BIG2,7.810e-4979.03ArfGEF protein of the BIG/GBF family n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1121contigEcto-sp9_F_contig1121:4944..6698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.6
Seed ortholog evalue3.7e-42
Seed eggNOG ortholog2880.D8LFA1
KEGG koko:K18442
KEGG Pathwayko04144,map04144
EggNOG free text desc.regulation of ARF protein signal transduction
EggNOG OGsCOG5307@1,KOG0929@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size372
Cds size372
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1121.1043.1prot_Ecto-sp9_F_contig1121.1043.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1121 4944..6698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928362.9449208-CDS-Ecto-sp9_F_contig1121:4943..50721622928362.9449208-CDS-Ecto-sp9_F_contig1121:4943..5072Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1121 4944..5072 -
1692277846.9393477-CDS-Ecto-sp9_F_contig1121:4943..50721692277846.9393477-CDS-Ecto-sp9_F_contig1121:4943..5072Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1121 4944..5072 -
1622928362.9597795-CDS-Ecto-sp9_F_contig1121:6008..61901622928362.9597795-CDS-Ecto-sp9_F_contig1121:6008..6190Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1121 6009..6190 -
1692277846.9490442-CDS-Ecto-sp9_F_contig1121:6008..61901692277846.9490442-CDS-Ecto-sp9_F_contig1121:6008..6190Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1121 6009..6190 -
1622928362.9688733-CDS-Ecto-sp9_F_contig1121:6637..66981622928362.9688733-CDS-Ecto-sp9_F_contig1121:6637..6698Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1121 6638..6698 -
1692277846.9568694-CDS-Ecto-sp9_F_contig1121:6637..66981692277846.9568694-CDS-Ecto-sp9_F_contig1121:6637..6698Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1121 6638..6698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1121.1043.1

>prot_Ecto-sp9_F_contig1121.1043.1 ID=prot_Ecto-sp9_F_contig1121.1043.1|Name=mRNA_Ecto-sp9_F_contig1121.1043.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=124bp
MESKSEDVVDAALGQLHKLIAGGLVRRNTMTTLKDGSSANLGEILVGVVM
ETGSRDKTVRRGGRAQAVRCLLSCVTSAEIEVHGEELRKVVLFVHETFLV
IDSTANRARYNKAQARATLDHILQ
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mRNA from alignment at Ecto-sp9_F_contig1121:4944..6698-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1121.1043.1 ID=mRNA_Ecto-sp9_F_contig1121.1043.1|Name=mRNA_Ecto-sp9_F_contig1121.1043.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1755bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1121:4944..6698- (Ectocarpus species9 EcSCA_722f female)
ATGGAGTCCAAGTCCGAGGACGTCGTTGACGCGGCCCTGGGCCAGCTGCA
CAAGCTAATCGGTGAGCCTGCGATAAGTTGTTTAGCACAAGCTTCGCATG
GCTCCAGTGCATTCGTAACAAGCCTTACTTCAGCGAAAACGGAGTTGGCG
GACCGTTGGGTGCTGGGCATGGGTACTTTTCTAGGCTTCGTGGTACGTGC
TGCTTTGGCAGCGTCGCCTCTGATCGTGATATTATGTTCGCAGTTACTAT
TGTGACACACCGGGGATACTTTAGGGCCCGCGCGTATAGAGTCGCGTCCT
ATGTAGGACGCCGGTTTCCTCACCTCGCCTCTGGTTTGGAACTGCTATCC
TCGTGGTTGGGTGCAACACGTTACCCACGCACCGCCTCGGAATCAATCTA
GATAACTTCGGTTGTTCGTGTACCGCGCGTGCTCTCTCTTTGTCGCCCTC
GCTTTTTGTTTGGGGGGGGGGGTGCTATCTTGCGTCATGTTATCGCCGAC
AAAATCAGCCGGTGGCCTCGTGAGGAGGAACACCATGACCACCCTCAAGG
ACGGGAGCTCCGCCAACCTCGGCGAGATCTTGGTGGGGGTCGTGATGGAG
ACAGGGTCGCGGGATAAGACCGTGAGACGGGGCGGTCGGGCCCAGGCCGT
GAGGTGCCTCTTGTCGTGCGTGACTTCTGCGGAGATTGAGGCAAGTACGG
CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGTGAAACAGCCGGCAGCT
ATTGTAGTATGTTGTAGATGCCGTCCTGGTCGGGGCTAAGTAGTCTAATG
GGTAAGCCTTTCTAACATCGTTGTCAGTAGTGTCGATGGTTTTGGTGTTT
TGCTCGTAGGGTTGTAGCATCGTTATTCTTCGTGTTGCGGTTGTTGTTGC
CGCTGCTGTCGTCGGCCCGTCCCAGCATAAAGCATCCACGTATACCACCC
GGGGTAGCATCAAAGTTCAGATACGCAATTCGTACATTAGTAACAACCGT
TTGTTGCCCGTACAATGCAGTTTCGCGCGTGTTAACAAATGGGCCAATGT
TCATGCTGGAGGTCAACAATGCCGCACGTCCTCGCCGCACGTCCTCGCCG
CACGTCCTCGCTCCCCCCATACATACAGCCCCCAAAACACACCAGTACAA
TTGTAGGTAGAATGCGGCATGTACATATCATTAACGTGCGGGTGGTCGCA
CAGGCGTGCAATCAGTTTTTGAAGATCGATTGCTCCACGACCGAGAGGGT
GCGAAGCTTTGCCGACACATGCAGGCAAGGTCTCGACGAGAAAGATGTTC
GCAAAAGCCACCCTTTGCGGCTATTGGAAGCCTCTTGGTTGTGGATCAAT
CGAGGTCTAAAAATCGATCGCACAACCTGTCCTTTCGCCCGCACGCTTAC
GGTAAACACCACTCGAGCGTTGAACGACTTCTGTGACAAGAGAGGAACAA
CACTGCGCGTCTCGTGTGGCAAGCGTGCTGCCCCCATGATGTCGACATGT
TTTATACCAGCAGCAAAAGTAGCACCCACTCCCACCCACCCCGCTTCTCC
CTGAGCTGCGGTCTCCAAAACCCGTTTGTCGATCGATCCTAATTGTGGTA
TCCTCTCCGATGGCATCCATCGGCAGGTTCACGGAGAAGAGCTGCGTAAA
GTTGTTTTGTTCGTGCACGAGACGTTCTTGGTGATCGACTCCACCGCCAA
CAGGGCGAGGTACAACAAGGCGCAGGCTAGGGCTACTCTCGACCACATCT
TGCAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1121:4944..6698-

>mRNA_Ecto-sp9_F_contig1121.1043.1 ID=mRNA_Ecto-sp9_F_contig1121.1043.1|Name=mRNA_Ecto-sp9_F_contig1121.1043.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1121:4944..6698- (Ectocarpus species9 EcSCA_722f female)
ATGGAGTCCAAGTCCGAGGACGTCGTTGACGCGGCCCTGGGCCAGCTGCA
CAAGCTAATCGATGGAGTCCAAGTCCGAGGACGTCGTTGACGCGGCCCTG
GGCCAGCTGCACAAGCTAATCGCCGGTGGCCTCGTGAGGAGGAACACCAT
GACCACCCTCAAGGACGGGAGCTCCGCCAACCTCGGCGAGATCTTGGTGG
GGGTCGTGATGGAGACAGGGTCGCGGGATAAGACCGTGAGACGGGGCGGT
CGGGCCCAGGCCGTGAGGTGCCTCTTGTCGTGCGTGACTTCTGCGGAGAT
TGAGCCGGTGGCCTCGTGAGGAGGAACACCATGACCACCCTCAAGGACGG
GAGCTCCGCCAACCTCGGCGAGATCTTGGTGGGGGTCGTGATGGAGACAG
GGTCGCGGGATAAGACCGTGAGACGGGGCGGTCGGGCCCAGGCCGTGAGG
TGCCTCTTGTCGTGCGTGACTTCTGCGGAGATTGAGGTTCACGGAGAAGA
GCTGCGTAAAGTTGTTTTGTTCGTGCACGAGACGTTCTTGGTGATCGACT
CCACCGCCAACAGGGCGAGGTACAACAAGGCGCAGGCTAGGGCTACTCTC
GACCACATCTTGCAGGTTCACGGAGAAGAGCTGCGTAAAGTTGTTTTGTT
CGTGCACGAGACGTTCTTGGTGATCGACTCCACCGCCAACAGGGCGAGGT
ACAACAAGGCGCAGGCTAGGGCTACTCTCGACCACATCTTGCAG
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