mRNA_Ecto-sp9_F_contig11141.989.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11141.989.1 vs.
Match: EsV-1-138 (n=2 Tax=root TaxID=1 RepID=D8LPG4_ECTSI) HSP 1 Score: 149 bits (376), Expect = 1.050e-37 Identity = 105/361 (29.09%), Postives = 174/361 (48.20%), Query Frame = 1
Query: 76 LWSELCKPEKSCDIQGNEMATAKLNHWFNDRRQHAGGNACLAVIGPSGVGKSTSVDLCAAENGFDVEHTYANVARTPQKLEAILVKLTMRRQQSVLVLDDFEAFITETTSMRDIVKISRAVGRHGNNQT-------LVIICNAIDKSFQPILDVSTVIPFQTAEAAHVQRVLRKVATRVSSFCYVPPMDIFFIAQESTGDIRQTINQMQFSHYTTGGS------RTMTKNKAI--HVGHHADSTSRRWFTTHRSTSLDCFTKNN--ESSTVDHICSMSKGFHMGVRDHLHRDYTFYFHNSTRNTMRSMWQVAEEVSACDTAGPD-EEDGLYDTENRELWATDNKSAVAHISTAIWLIGGRK 1104
LW ++ P ++ GN A ++ WF++ +ACL + G SG GKST+V + A ++ F TYA+ +RTP +LE ++ + + + V+VLDDFE F+ ETTS+R + K+ R + G+ +II N+ K F + D+ST I F+ + + +V ++A RV YVPPM + + S+G I Q + Q+Q + G + R K + I H H D S W + L+ NN E +D + S + V LH +Y ++ + VAE +S DT + D LYD EN + W+ ++ + V+ ++ + I G++
Sbjct: 27 LWYQVASPTSHQELVGNGKAIRQIEDWFSEASAEPETSACLFLHGESGTGKSTAVTMIAQKHEFKTVTTYADRSRTPARLEGVVREAGVHGPRGVVVLDDFEIFLEETTSLRVLSKLLRQLLSTGDTSVRNRSRCLFIIISNSKHKQFGSLQDISTTIHFERLHQSEINKVFNRLAWRVRRHSYVPPMASYLSSISSSGTITQGVQQLQLLY--AGDTPPDFLRRPGRKKQKIAGHTNSHRDCISYLWSDIYTDKILEHLVDNNFHEGRVIDRLRSFERERLDKVGGQLHEEYA-----RRMTSVEQLRDVAESISMSDTNRLEFHHDALYDGENSDSWSENDMAFVSFVAYGVLTIKGQR 380
BLAST of mRNA_Ecto-sp9_F_contig11141.989.1 vs.
Match: Replication (factor C large subunit n=1 Tax=Candidatus Micrarchaeota archaeon TaxID=2250274 RepID=A0A7L4R7A9_9ARCH) HSP 1 Score: 68.6 bits (166), Expect = 5.020e-9 Identity = 53/206 (25.73%), Postives = 101/206 (49.03%), Query Frame = 1
Query: 76 LWSELCKPEKSCDIQGNEMATAKLNHWFNDRRQHAGGNACLAVIGPSGVGKSTSVDLCAAENGFDVEHTYANVARTPQKLEAIL----VKLTMRRQQSVLVLDDFEAFITETTSMRDIVKISRAVGRHGNNQTLVIICNAIDKSFQPILDVSTVIPFQTAEAAHVQRVLRKVATRVSSFCYVPPMDIFFIAQESTGDIRQTINQMQ 681
L +E P+K+ D+ GN +L W + + G + + GP+GVGK+T V+ A E ++ A+ R+ +++E ++ + T+ + V+++DD +A + + I+ A+ R N ++ +A +K + + ++ + + A V ++L ++A + C PP I IAQ S GDIR IN +Q
Sbjct: 2 LLAEKYAPQKTDDVLGNHELKRQLKRWALNWGRGEKGKPII-LTGPTGVGKTTLVNALAKELNLELVQMSASDFRSRERVEKVISGAAMASTLSGKGKVILVDDIDA-MAGREDYGGVAAIA-AILRENNCPMILTATDAYEKKISSLRFLCDILKMRRSIAPSVAKLLTRIAEKEGIPC--PPEKITEIAQNSNGDIRAAINDLQ 202
BLAST of mRNA_Ecto-sp9_F_contig11141.989.1 vs.
Match: Replication (factor C large subunit n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A2J6MZP8_9ARCH) HSP 1 Score: 62.0 bits (149), Expect = 6.280e-7 Identity = 49/211 (23.22%), Postives = 95/211 (45.02%), Query Frame = 1
Query: 79 WSELCKPEKSCDIQGNEMATAKLNHWFNDRRQHAGGNACLAVIGPSGVGKSTSVDLCAAENGFDVEHTYANVARTPQKLEAILVKLTMRRQ----QSVLVLDDFEAFITETT------SMRDIVKISRAVGRHGNNQTLVIICNAIDKSFQPILDVSTVIPFQTAEAAHVQRVLRKVATRVSSFCYVPPMDIFFIAQESTGDIRQTINQMQ 681
W+ KP+ ++ GN+ A +L W + + GPSG+GK+ +V+ AA+ G ++ A+ RT + + + + +++LD+ + +T T ++ DIVK+++ ++I NA D F + + +I F+ + V + L+++ R + FIAQ S GD+R +N +Q
Sbjct: 6 WTVKHKPKFLSEVVGNKDAIQQLVEWVKSWDKRIPKKRAAFIFGPSGIGKTVTVEALAADLGMELVEKNASDYRTEEAINRFAGLASQYGSLFGGKRIILLDELDG-LTGTADKGGVKAITDIVKVAQC-------PIVLIANNAYDPRFTNLRNYCLLIEFKKPPTSEVMKHLKRICIREG--IQADDDALKFIAQRSEGDVRSAVNDLQ 206
BLAST of mRNA_Ecto-sp9_F_contig11141.989.1 vs.
Match: Replication (factor C large subunit n=1 Tax=archaeon SCG-AAA382B04 TaxID=2137776 RepID=A0A2R6T8K2_9ARCH) HSP 1 Score: 61.2 bits (147), Expect = 1.170e-6 Identity = 58/217 (26.73%), Postives = 91/217 (41.94%), Query Frame = 1
Query: 79 WSELCKPEKSCDIQGNEMATAKLNHWFNDRRQHAGGNACLAVIGPSGVGKSTSVDLCAAENGFDVEHTYANVARTPQKLEAILVKLTMRRQQSVLVLDDFEAFITETTSMRDIVKISRAVGRHGN----------------NQTLVIICNAIDKSFQPILDVSTVIPFQTAEAAHVQRVLRKVATRVSSFCYVPPMDIFFIAQESTGDIRQTINQMQ 681
W+E +P K D+ GN+ A +L W + + N L ++GP GVGK+TS A + + V A+ RT I+ KL Q+ + D + MR +V I A HG NQ +++I N + + S I F+ V R L+K+A + Y + IA+ ++GD+R IN +Q
Sbjct: 6 WTEKYRPTKLKDVVGNKKAKKQLKKWGDQWEEGEPNNKVLRLVGPPGVGKTTSAYALAKQKNWQVMEMNASDKRT----SFIVKKLAGGAAQTGTLSDGAQG-------MR-LVIIDEADNLHGRSDRGGKAAITKVLKQTNQPMILIANDEYDMSRGMRSNSKKIEFKNPNQPEVVRALQKIAKKEGIKAYKNALRE--IARNASGDVRGAINDLQ 208
BLAST of mRNA_Ecto-sp9_F_contig11141.989.1 vs.
Match: AAA (domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DGJ2_9ZZZZ) HSP 1 Score: 60.5 bits (145), Expect = 2.320e-6 Identity = 49/210 (23.33%), Postives = 95/210 (45.24%), Query Frame = 1
Query: 94 KPEKSCDIQGNEMATAKLNHWFND----RRQHAGGNACLAVIGPSGVGKSTSVDLCAAENGFDVEHTYANVARTPQKLEAILVKLTMRRQQSVLVLDDFEAFITETTS----MRDIVKISRAVGRHGNNQTLVIICNAIDKSFQPILDVSTVIPFQTAEAAHVQRVLRKVATRVSSFCYVPPM-----DIFFIAQESTGDIRQTINQMQF 684
KP ++ G++ + + L+ W + GNA L V+GP G+GK+T+V L A E G+ V A+ R+ L +L R ++ ++V+D+ + F + + D++K S N ++ I N + P+ ++ F + V +AT + + C + D+ + +++ DIR +NQ++F
Sbjct: 74 KPSSLKEVIGHKDSISTLSQWLSTWSTGGNTEGKGNAAL-VVGPPGIGKTTTVHLLAKEFGYAVTEYNASDTRSVSMLRGLLGLGMKRLRKEIIVMDEVDGFTAQERGGVGELADLIKKS--------NLPIICIANQLVPKLAPLQKACLLVKFS-------RPVKSTIATALLAVCKKEGISKLKADLEALCEQNGNDIRSLLNQLEF 267
BLAST of mRNA_Ecto-sp9_F_contig11141.989.1 vs.
Match: Replication (factor C large subunit n=1 Tax=Candidatus Methanohalarchaeum thermophilum TaxID=1903181 RepID=A0A1Q6DUC4_9EURY) HSP 1 Score: 57.8 bits (138), Expect = 1.600e-5 Identity = 54/217 (24.88%), Postives = 94/217 (43.32%), Query Frame = 1
Query: 79 WSELCKPEKSCDIQGNEMATAKLNHWFNDRRQHAGGNACLAVIGPSGVGKSTSVDLCAAENGFDVEHTYANVARTPQKLEAILVKLTMRRQQSVLVLDDFEAFITETTSMRDIVKISRAVGRHGNNQT--LVIICNAIDKSFQPILDV--------------STVIPFQTAEAAHVQRVLRKVATRVSSFCYVPPMDIFFIAQESTGDIRQTINQMQ 681
W E +P+K ++ GN+ A +L W + ++++GP G+GK+TS + A E+ +++ A+ RT I+ K+ +S I++ + R +V I A HG++ I I +S QPI+ + S I F+ V R+L K+A + Y + IA+ + GD+R IN +Q
Sbjct: 8 WVEKHRPQKFEEVAGNDKAIDQLQEWGEKWKNEIPKYRAVSLVGPPGIGKTTSAYILAKEHKWNIIEMNASDKRTKD----IINKIAGSASKS--------GTISQGSKGRRLVIIDEADNLHGSSDRGGKKAITKVIKESSQPIVLIANDEYGMSKGMRSNSKKIEFKRPNQKEVIRLLNKIAKKEKIKAYKNALRE--IARNANGDVRGAINDLQ 210
BLAST of mRNA_Ecto-sp9_F_contig11141.989.1 vs.
Match: Uncharacterized (protein (Fragment) n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TJV8_POCDA) HSP 1 Score: 56.6 bits (135), Expect = 4.400e-5 Identity = 58/252 (23.02%), Postives = 103/252 (40.87%), Query Frame = 1
Query: 76 LWSELCKPEKSCDIQGNEMATAKLNHWFNDRR-QHAGGNACLAVIGPSGVGKSTSVDLCAAENGFDVEHT-----------YANVARTPQKLEAILVKLTMRR-----------------QQSVLVLDDFEAFITETTSMRDIVKISRAVGR-----------HGNNQTLVIICNAIDK-------SFQPILDVSTVIPFQTAEAAHVQRVLRKVATRVSSFCYVPPMD-IFFIAQESTGDIRQTINQMQFS 687
LW E KP+ ++ ++ A++ +WF D+ G + L + GP+G GK+ +V++ A+E GF+V+ Y N Q I +R ++ VLV D F E + +++++ + G+ HG++ ++ + + SF PI QT+ + R++ A + +P D + +AQ S GDIR IN +QFS
Sbjct: 49 LWLEKYKPKSELELAVHKKKVAEVRNWFLDQLCTQVGHGSILLLTGPTGAGKTATVNVLASELGFEVQEWLNPVSDTEDEGYFNWKSHSQSQVKIFQDFIVRASKYPTLSIFSGKGDNSVKKIVLVEDLPNIFFREASKLQEVLSTYKQRGQVPIVFVISDSHHGDSNVHKLLPKDVQEKLKIHNISFNPIA--------QTSLVKALNRIISTEAQLNKTTFEIPVKDTVQLLAQNSGGDIRTAINGLQFS 292
BLAST of mRNA_Ecto-sp9_F_contig11141.989.1 vs.
Match: Replication (factor C large subunit n=5 Tax=Methanosarcina TaxID=2207 RepID=A0A0E3NE84_METTE) HSP 1 Score: 56.2 bits (134), Expect = 5.950e-5 Identity = 49/207 (23.67%), Postives = 91/207 (43.96%), Query Frame = 1
Query: 79 WSELCKPEKSCDIQGNEMATAKLNHWFNDRRQHAGGNACLAVIGPSGVGKSTSVDLCAAENGFDVEHTYANVARTPQKLEAILVKL----TMRRQQSVLVLDDFEAF--ITETTSMRDIVKISRAVGRHGNNQTLVIICNAIDKSFQPILDVSTVIPFQTAEAAHVQRVLRKVATRVSSFCYVPPMDIFFIAQESTGDIRQTINQMQ 681
W+E +P+ +I GN+ A L W + ++GP+GVGK+++ A + G++V A+ RT +E + T+ + +++LD+ + + MR I I + Q +V+I N + I ++ I F + ++ + L+K+ C P I IA+ + GD+R IN +Q
Sbjct: 7 WAEKYRPQTLKEIVGNKKAVQDLRTWAEKWLSGIPEKRAVILLGPAGVGKTSTAHALARDMGWEVIELNASDQRTAGVIEKVAGSAASMNTLFGGKRLIILDEADNLHGTADRGGMRAIAGIIK-----NTLQPIVLIVNDVYGLTPTIRNLCQEIKFGSVQSRSMIPALKKICESEKILC--SPDAIQQIAENAGGDLRSAINDLQ 206
BLAST of mRNA_Ecto-sp9_F_contig11141.989.1 vs.
Match: Uncharacterized (protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8AHE5_BETVV) HSP 1 Score: 52.4 bits (124), Expect = 9.050e-5 Identity = 26/71 (36.62%), Postives = 41/71 (57.75%), Query Frame = 1
Query: 55 KRDAQSQLWSELCKPEKSCDIQGNEMATAKLNHWFNDRRQHAGGNACLAVIGPSGVGKSTSVDLCAAENGF 267
++D +QLWSE +P +S D+ + +L W N+ G+ L IGP G GKST++++ AAE G+
Sbjct: 37 QQDRSTQLWSERYRPRRSRDLCVSNKKANELRTWLNE------GSGVLVCIGPPGAGKSTALEVLAAELGY 101 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11141.989.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11141.989.1 >prot_Ecto-sp9_F_contig11141.989.1 ID=prot_Ecto-sp9_F_contig11141.989.1|Name=mRNA_Ecto-sp9_F_contig11141.989.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=368bp MARVDWRRSVVFGEKPTAKRDAQSQLWSELCKPEKSCDIQGNEMATAKLNback to top mRNA from alignment at Ecto-sp9_F_contig11141:944..2047+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11141.989.1 ID=mRNA_Ecto-sp9_F_contig11141.989.1|Name=mRNA_Ecto-sp9_F_contig11141.989.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1104bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11141:944..2047+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11141:944..2047+ >mRNA_Ecto-sp9_F_contig11141.989.1 ID=mRNA_Ecto-sp9_F_contig11141.989.1|Name=mRNA_Ecto-sp9_F_contig11141.989.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2208bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11141:944..2047+ (Ectocarpus species9 EcSCA_722f female)back to top |