mRNA_Ecto-sp9_F_contig11113.965.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11113.965.1
Unique NamemRNA_Ecto-sp9_F_contig11113.965.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig11113.965.1 vs.
Match: USP (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJN5_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 5.710e-73
Identity = 115/119 (96.64%), Postives = 119/119 (100.00%), Query Frame = 1
Query:    1 KQEDAHEFLRHLLDKMVDCYLKRRGVKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK 357
            +QEDAHEFLRHLLDKMVDCYLKR+GVKSSAP+RLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSI+VALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK
Sbjct:  368 RQEDAHEFLRHLLDKMVDCYLKRKGVKSSAPSRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIEVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK 486          
BLAST of mRNA_Ecto-sp9_F_contig11113.965.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD98_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 1.690e-51
Identity = 88/127 (69.29%), Postives = 104/127 (81.89%), Query Frame = 1
Query:    1 KQEDAHEFLRHLLDKMVDCYLKRRGVKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDL----SRGV----RSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK 357
            +QEDAHEFLRHL+DKM   YL+RRGV   APNRLAETTPI+R+FGGYLRS+LKC++CG CSDTFDPFMDL+M++    S GV    RS+  ALRRF A E LG+GNEW+CGGC K V+AEK+LSVFK
Sbjct:  237 RQEDAHEFLRHLVDKMAGSYLERRGVDPFAPNRLAETTPIHRVFGGYLRSQLKCSECGFCSDTFDPFMDLAMNVEKVDSSGVAMNERSLQAALRRFTAPETLGAGNEWKCGGCNKLVEAEKNLSVFK 363          
BLAST of mRNA_Ecto-sp9_F_contig11113.965.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG0_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 2.500e-49
Identity = 86/126 (68.25%), Postives = 101/126 (80.16%), Query Frame = 1
Query:    4 QEDAHEFLRHLLDKMVDCYLKRRGVKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDL----SRGV----RSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK 357
            QEDAHE LRHL+DKM   YL+RRGV   A NRL ETTPI+R+FGGYLRS+L+C+KCG CSDTFDPFMDL+M++    SRGV    RS+  ALRRF A E LG+GNEW+CGGC K V+AEK+LSVFK
Sbjct:  299 QEDAHELLRHLVDKMAGSYLERRGVDPFASNRLGETTPIHRVFGGYLRSQLECSKCGFCSDTFDPFMDLAMNVEKVDSRGVAMKERSLQAALRRFTAPETLGAGNEWKCGGCNKLVEAEKNLSVFK 424          
BLAST of mRNA_Ecto-sp9_F_contig11113.965.1 vs.
Match: USP (domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY7_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.630e-42
Identity = 66/117 (56.41%), Postives = 92/117 (78.63%), Query Frame = 1
Query:    1 KQEDAHEFLRHLLDKMVDCYLKRRGVKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSV 351
            +QEDAHEFLR L+D M +  L+R GVK++AP+RL ETT INR+FGGYLR++++CTKC +CS+T++ +MDLS+D+   + S++ AL+RF A E L S N WRCGGCK+ V A K L++
Sbjct:   98 RQEDAHEFLRKLVDSMAEAILRRHGVKANAPHRLDETTAINRVFGGYLRNQVQCTKCRYCSNTYELYMDLSLDMVGNISSLEDALKRFQAVETLDSSNRWRCGGCKQKVCARKQLTI 214          
BLAST of mRNA_Ecto-sp9_F_contig11113.965.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZBR0_NANGC)

HSP 1 Score: 138 bits (348), Expect = 3.380e-36
Identity = 65/116 (56.03%), Postives = 85/116 (73.28%), Query Frame = 1
Query:    1 KQEDAHEFLRHLLDKMVDCYLKRRGVKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLS 348
            +QEDAHEFLRHLLD +    L+   VKS+AP RLAETT ++RIFGGYLRS+++CT+CGHCS+T+D F+DLS+++   V  ++ AL RF A E L   N WRC  C + V A+K LS
Sbjct:  251 RQEDAHEFLRHLLDALQSGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTAVETLDRANRWRCPACSQLVCAQKRLS 366          
BLAST of mRNA_Ecto-sp9_F_contig11113.965.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase 36 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEV7_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.460e-35
Identity = 65/116 (56.03%), Postives = 85/116 (73.28%), Query Frame = 1
Query:    1 KQEDAHEFLRHLLDKMVDCYLKRRGVKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLS 348
            +QEDAHEFLRHLLD +    L+   VKS+AP RLAETT ++RIFGGYLRS+++CT+CGHCS+T+D F+DLS+++   V  ++ AL RF A E L   N WRC  C + V A+K LS
Sbjct:  251 RQEDAHEFLRHLLDALQSGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTAVETLDRANRWRCPACSQLVCAQKRLS 366          
BLAST of mRNA_Ecto-sp9_F_contig11113.965.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS17_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.720e-35
Identity = 64/116 (55.17%), Postives = 86/116 (74.14%), Query Frame = 1
Query:    1 KQEDAHEFLRHLLDKMVDCYLKRRGVKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLS 348
            +QEDAHEFLRHLLD + +  L+   VKS+AP RLAETT ++RIFGGYLRS+++CT+CGHCS+T+D F+DLS+++   V  ++ AL RF A E L   N W+C  C + V A+K LS
Sbjct:  251 RQEDAHEFLRHLLDALQNGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTAVETLDRANRWKCPACSQLVCAQKRLS 366          
BLAST of mRNA_Ecto-sp9_F_contig11113.965.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUI1_HETAK)

HSP 1 Score: 127 bits (319), Expect = 4.880e-35
Identity = 63/122 (51.64%), Postives = 86/122 (70.49%), Query Frame = 1
Query:    1 KQEDAHEFLRHLLDKMVDCYLKRRGVKSSA--PN--RLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVF 354
            +QEDA EFL HLLD MV   L+R  VK +A  PN  R++ETT I+RIFGGYLR+++KC +CG+CS+TF+  MDLS++L+ G +S+  A   F   E+L S N WRC  C+K V A K L+++
Sbjct:   16 RQEDAQEFLCHLLDAMVKTELRRARVKENATGPNGERISETTAIHRIFGGYLRNQVKCPECGYCSETFNQTMDLSLELTGGTQSLQQAYSHFSRREKLDSANRWRCDECRKQVCATKQLTLY 137          
BLAST of mRNA_Ecto-sp9_F_contig11113.965.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFU1_9STRA)

HSP 1 Score: 129 bits (324), Expect = 2.160e-34
Identity = 60/120 (50.00%), Postives = 81/120 (67.50%), Query Frame = 1
Query:    1 KQEDAHEFLRHLLDKMVDCYLKRRGVKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFKV 360
            +QEDAHEFLRHLLD +    L R G+K +   R  ET+ I RIFGGYLRS+LKC+ C  C  T+D F+DLS++++  + S+  AL+ F A E L   N W+CGGC K V+A K +++FK 
Sbjct:  130 RQEDAHEFLRHLLDGLHRACLVREGLKPTDCGRREETSAIYRIFGGYLRSQLKCSNCAFCLHTYDAFLDLSLEITGKISSLPSALQMFQAAEVLDKHNRWKCGGCGKHVRARKQITIFKA 249          
BLAST of mRNA_Ecto-sp9_F_contig11113.965.1 vs.
Match: USP (domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RJQ6_9ARCH)

HSP 1 Score: 125 bits (315), Expect = 5.100e-34
Identity = 57/119 (47.90%), Postives = 81/119 (68.07%), Query Frame = 1
Query:    4 QEDAHEFLRHLLDKMVDCYLKRRGVKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFKV 360
            QED+HEFLR LL+KM    L+  GVK  AP RL ETT I+++FGGY  ++L C  C + S+ F+PF+DL +++  G+ S+D ALR F   E L + N W+C  C+KPV A+K +++ KV
Sbjct:    3 QEDSHEFLRCLLEKMHRASLRVAGVKEGAPGRLDETTIIHKLFGGYFCNQLHCPNCKYDSNNFEPFLDLCLEVGNGINSVDRALRHFATVETLDADNRWKCPRCEKPVCAKKQMTIRKV 121          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11113.965.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
USP5.710e-7396.64domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Ubiquitin1.690e-5169.29carboxyl-terminal hydrolase n=1 Tax=Ectocarpus sil... [more]
Ubiquitin2.500e-4968.25carboxyl-terminal hydrolase n=1 Tax=Ectocarpus sp.... [more]
USP1.630e-4256.41domain-containing protein (Fragment) n=1 Tax=Tribo... [more]
Ubiquitin3.380e-3656.03carboxyl-terminal hydrolase n=1 Tax=Nannochloropsi... [more]
Ubiquitin1.460e-3556.03carboxyl-terminal hydrolase 36 n=1 Tax=Nannochloro... [more]
Ubiquitin2.720e-3555.17carboxyl-terminal hydrolase n=1 Tax=Nannochloropsi... [more]
Hypothetical4.880e-3551.64protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Hypothetical2.160e-3450.00protein (Fragment) n=2 Tax=Pinguiococcus pyrenoido... [more]
USP5.100e-3447.90domain-containing protein n=1 Tax=archaeon TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11113contigEcto-sp9_F_contig11113:2554..3855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score250.4
Seed ortholog evalue4.4e-64
Seed eggNOG ortholog2880.D8LD97
KEGG koko:K11855
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0016787,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0101005,GO:0140096
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1865@1,KOG1865@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size363
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928351.421667-CDS-Ecto-sp9_F_contig11113:2553..27061622928351.421667-CDS-Ecto-sp9_F_contig11113:2553..2706Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11113 2554..2706 +
1692277842.2771435-CDS-Ecto-sp9_F_contig11113:2553..27061692277842.2771435-CDS-Ecto-sp9_F_contig11113:2553..2706Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11113 2554..2706 +
1622928351.4343154-CDS-Ecto-sp9_F_contig11113:3645..38551622928351.4343154-CDS-Ecto-sp9_F_contig11113:3645..3855Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11113 3646..3855 +
1692277842.2878048-CDS-Ecto-sp9_F_contig11113:3645..38551692277842.2878048-CDS-Ecto-sp9_F_contig11113:3645..3855Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11113 3646..3855 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11113.965.1prot_Ecto-sp9_F_contig11113.965.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11113 2554..3855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11113.965.1

>prot_Ecto-sp9_F_contig11113.965.1 ID=prot_Ecto-sp9_F_contig11113.965.1|Name=mRNA_Ecto-sp9_F_contig11113.965.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=121bp
KQEDAHEFLRHLLDKMVDCYLKRRGVKSSAPNRLAETTPINRIFGGYLRS
RLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEW
RCGGCKKPVQAEKSLSVFKV*
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mRNA from alignment at Ecto-sp9_F_contig11113:2554..3855+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11113.965.1 ID=mRNA_Ecto-sp9_F_contig11113.965.1|Name=mRNA_Ecto-sp9_F_contig11113.965.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1302bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11113:2554..3855+ (Ectocarpus species9 EcSCA_722f female)
AAACAGGAGGACGCCCACGAGTTCCTGCGGCACCTCCTGGACAAGATGGT GGACTGCTACCTCAAGCGCAGGGGGGTCAAGTCTTCCGCGCCCAACAGGC TGGCCGAGACGACGCCGATCAACCGCATCTTCGGAGGGTACCTCCGCAGC CGGGTGCGTACCACACGCCCGGATGCGTACCACGGTAGACATATGTACGG CCACGGAAGTTACCGCACACTCCGCCTTGGACCGATTTCCATTTCAAACA GTCCGGTTAGAAATTCTGCGCCGCAAAGAGAGGCGACGGTGCCAAAAAAA AAAATGGGCAGCGTTGGAGCAGCACTAATAGAGTAGCTGTCGTCGAGAGC GCATCACGGTAGACACTATACCCCCGTGAACGAGTTTCATTTCAAACAGT CCGGTTTGAGGCTGCACCCCCAGTATAGAGGTGCCCAAACAATGGGCGGC GTTTGGAACAGCAGTCTCTTGGTCGTGAGCGGCTTACCGACAACGCACGT GTTGTCCTGTGTTGTGGGGCTTATCGTCTCCGTAGTCGGAGTCATGAGCT TCGGCCCGGGGGGGGTGTGTGGTATCTTGTGTCATGTCATGTCACCTACG GGACGCGGTGAACCTCGTCCAAAACATGCTTCTACGTACAGGGTATTACG GCCTTGACTTGGAAGGAGGGTTGGGTTGGTTGGCGGACCACGGTGCACAC AGTCGCGCCTTCTTTTTTTTTTCCCTTCCAAAAGCGAAAACAATTTGTGA CAGCAGTATCTATCCACAGGCATGAGAGTGTTCATTCTTCGCTCTGGTGT TGCGGTCGGTTAGACCGCTGCACGCCAAGGTTCCGGTGGCGTGCTTGAGG CTCGCGTCGAAGTTTGCTCGGGTTTGTGTGCATGTGTGCATGCATGGGGT GTTAGTATGTCGCCGTTCCTTTGATTGTTTTTCTTTGCGCGCTGCGATAA CGTTTACCGTCTTCTCCGGATTCGAACACATCATGTATAGGGTAATAATT TTTTCGCCTAGAATAGATGGGACGAAAACATGCGTTGTATTCGTGAGGAT GACGTTGTTACCCCTCTACACCTGTTTATTCTTTTTTTCCAGCTCAAGTG CACTAAGTGCGGTCACTGCAGCGACACGTTCGACCCTTTCATGGACCTGT CCATGGACCTCTCGAGAGGAGTGCGATCGATAGACGTGGCTTTGAGGCGT TTTGTCGCGACAGAGCGGCTGGGTTCCGGTAACGAGTGGCGGTGCGGTGG GTGCAAGAAGCCGGTTCAGGCGGAGAAGAGCCTCTCGGTTTTCAAGGTAT AG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11113:2554..3855+

>mRNA_Ecto-sp9_F_contig11113.965.1 ID=mRNA_Ecto-sp9_F_contig11113.965.1|Name=mRNA_Ecto-sp9_F_contig11113.965.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11113:2554..3855+ (Ectocarpus species9 EcSCA_722f female)
AAACAGGAGGACGCCCACGAGTTCCTGCGGCACCTCCTGGACAAGATGGT
GGACTGCTACCTCAAGCGCAGGGGGGTCAAGTCTTCCGCGCCCAACAGGC
TGGCCGAGACGACGCCGATCAACCGCATCTTCGGAGGGTACCTCCGCAGC
CGGAAACAGGAGGACGCCCACGAGTTCCTGCGGCACCTCCTGGACAAGAT
GGTGGACTGCTACCTCAAGCGCAGGGGGGTCAAGTCTTCCGCGCCCAACA
GGCTGGCCGAGACGACGCCGATCAACCGCATCTTCGGAGGGTACCTCCGC
AGCCGGCTCAAGTGCACTAAGTGCGGTCACTGCAGCGACACGTTCGACCC
TTTCATGGACCTGTCCATGGACCTCTCGAGAGGAGTGCGATCGATAGACG
TGGCTTTGAGGCGTTTTGTCGCGACAGAGCGGCTGGGTTCCGGTAACGAG
TGGCGGTGCGGTGGGTGCAAGAAGCCGGTTCAGGCGGAGAAGAGCCTCTC
GGTTTTCAAGGTATAGCTCAAGTGCACTAAGTGCGGTCACTGCAGCGACA
CGTTCGACCCTTTCATGGACCTGTCCATGGACCTCTCGAGAGGAGTGCGA
TCGATAGACGTGGCTTTGAGGCGTTTTGTCGCGACAGAGCGGCTGGGTTC
CGGTAACGAGTGGCGGTGCGGTGGGTGCAAGAAGCCGGTTCAGGCGGAGA
AGAGCCTCTCGGTTTTCAAGGTATAG
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