mRNA_Ecto-sp9_F_contig11059.929.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11059.929.1
Unique NamemRNA_Ecto-sp9_F_contig11059.929.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11059.929.1 vs.
Match: F-box (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI17_ECTSI)

HSP 1 Score: 514 bits (1324), Expect = 2.710e-182
Identity = 284/328 (86.59%), Postives = 287/328 (87.50%), Query Frame = 1 
Query:    1 MCARIAAQQRQRASAARRLRQAEDERRLESLVAGRTAMMIRPLDLSVNNHLQQLRASVDASWSSFSTAWDARRARGSGSGSTEGGGLLSDAKATAAPPLPPAAGFVMPPCTHRGAPPA-GSGRGRGHTAVEEGERTAAAEAECPECAAIAAAHVLAGAGAATTGGRLQQQQGRGTDVVDVWAGSSLGVLNADALHRSLTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWNPKSSAVTQRVHSPLR--------W----CHLELLGRRQVLGVHAAHRVCCYLLCSLCQWRVGLFATPQNRYN 945
            MCARIA QQRQRASAARRLRQAEDERRLE LVAGRTAMMIRPLDLSVNNHLQQLRASVDASWSSFSTAWDARRARGSGSGSTEGGGL SDAKATAAPPLPPAAGFVMPPCTHRGAPPA GSGRGR HTAVEEGERTAAAEAECPECAAIAAAHVLAGAGAATTGGRLQQQQGRGTDV DVWAGSSLGVLNADALHRSLTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWNPKSSAVTQR    LR        W    C + +L    V+G           L  LCQWRVGLFATPQNRYN
Sbjct:    1 MCARIAEQQRQRASAARRLRQAEDERRLERLVAGRTAMMIRPLDLSVNNHLQQLRASVDASWSSFSTAWDARRARGSGSGSTEGGGLHSDAKATAAPPLPPAAGFVMPPCTHRGAPPAAGSGRGRRHTAVEEGERTAAAEAECPECAAIAAAHVLAGAGAATTGGRLQQQQGRGTDVFDVWAGSSLGVLNADALHRSLTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWNPKSSAVTQRSFI-LRCVGATWSCWAGGKCWVSMLLIACVVG----------WLRGLCQWRVGLFATPQNRYN 317
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BLAST of mRNA_Ecto-sp9_F_contig11059.929.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP0_9PHAE)

HSP 1 Score: 436 bits (1122), Expect = 3.770e-147
Identity = 235/270 (87.04%), Postives = 239/270 (88.52%), Query Frame = 1 
Query:    1 MCARIAAQQRQRASAARRLRQAEDERRLESLVAGRTAMMIRPLDLSVNNHLQQLRASVDASWSSFSTAWDARRARGSGSGSTEGGGLLSDAKATAAPPLPPAAGFVMPPCTHRGAPPAGSGRGRGHTAVEEGERTAAAEAECPECAAIAAAHVLAGAGAATTGGRLQQQ-------QGRGTDVVDVWAGSSLGVLNADALHRSLTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWNPKSSAVTQ 789
            MCARIAAQQRQRASAARRLRQAEDERRLESLVAGRTAMMIRPLDLS NNHLQQLRASVDASWSSFSTAWDARRARGSGSGST+GGG           PLPPAAGFVMPPCTHRGAPPAGSGRGRGHTAVE+GERT AAEAECPECAAIAAAHVLAGAGA                 QGRGTDVVDVWAGSSLGVLNADAL R+LTFL+PRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWNPKSSAVTQ
Sbjct:  154 MCARIAAQQRQRASAARRLRQAEDERRLESLVAGRTAMMIRPLDLSANNHLQQLRASVDASWSSFSTAWDARRARGSGSGSTDGGG-----------PLPPAAGFVMPPCTHRGAPPAGSGRGRGHTAVEQGERTLAAEAECPECAAIAAAHVLAGAGAXXXXXXXXXXXXXXXXXQGRGTDVVDVWAGSSLGVLNADALQRALTFLEPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWNPKSSAVTQ 412
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BLAST of mRNA_Ecto-sp9_F_contig11059.929.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6K8_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.150e-11
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:  547 SSLGVLNADALHRSLTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWNPKSSAVTQ 789
            S L +L  D   R L  LQP DL ELAQAS+G + AAD++ +W  +W  RFG +W S+  + AA RWH H W+P   A  Q
Sbjct:   98 SFLPLLPDDLRLRCLALLQPEDLFELAQASKGCQAAADAEPLWAGLWQYRFGRVWASQPLQDAAERWHCH-WDPLRHAPLQ 177
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11059.929.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
F-box2.710e-18286.59domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized3.770e-14787.04protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.150e-1146.91protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11059contigEcto-sp9_F_contig11059:303..1316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-00_000680.1
Exons2
Model size945
Cds size945
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928342.640358-CDS-Ecto-sp9_F_contig11059:302..4581622928342.640358-CDS-Ecto-sp9_F_contig11059:302..458Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11059 303..458 -
1692277840.3105538-CDS-Ecto-sp9_F_contig11059:302..4581692277840.3105538-CDS-Ecto-sp9_F_contig11059:302..458Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11059 303..458 -
1622928342.6502159-CDS-Ecto-sp9_F_contig11059:527..13161622928342.6502159-CDS-Ecto-sp9_F_contig11059:527..1316Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11059 528..1316 -
1692277840.318832-CDS-Ecto-sp9_F_contig11059:527..13161692277840.318832-CDS-Ecto-sp9_F_contig11059:527..1316Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11059 528..1316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11059.929.1prot_Ecto-sp9_F_contig11059.929.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11059 303..1316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11059.929.1

>prot_Ecto-sp9_F_contig11059.929.1 ID=prot_Ecto-sp9_F_contig11059.929.1|Name=mRNA_Ecto-sp9_F_contig11059.929.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=315bp
MCARIAAQQRQRASAARRLRQAEDERRLESLVAGRTAMMIRPLDLSVNNH
LQQLRASVDASWSSFSTAWDARRARGSGSGSTEGGGLLSDAKATAAPPLP
PAAGFVMPPCTHRGAPPAGSGRGRGHTAVEEGERTAAAEAECPECAAIAA
AHVLAGAGAATTGGRLQQQQGRGTDVVDVWAGSSLGVLNADALHRSLTFL
QPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWH
LHDWNPKSSAVTQRVHSPLRWCHLELLGRRQVLGVHAAHRVCCYLLCSLC
QWRVGLFATPQNRYN
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mRNA from alignment at Ecto-sp9_F_contig11059:303..1316-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11059.929.1 ID=mRNA_Ecto-sp9_F_contig11059.929.1|Name=mRNA_Ecto-sp9_F_contig11059.929.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1014bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11059:303..1316- (Ectocarpus species9 EcSCA_722f female)
ATGTGCGCCAGGATCGCCGCGCAGCAGCGGCAGCGGGCCTCGGCCGCGAG
GCGCCTGCGCCAGGCGGAGGACGAGCGCAGGCTCGAGAGCTTGGTGGCGG
GGAGGACTGCGATGATGATCCGGCCGCTGGACCTGTCGGTGAACAACCAC
CTGCAACAGCTGCGCGCGTCGGTGGACGCGTCGTGGTCGTCTTTCTCGAC
GGCCTGGGACGCGAGACGGGCGAGGGGTAGCGGGTCGGGAAGCACCGAAG
GCGGCGGGCTGCTGTCGGATGCGAAGGCGACTGCTGCGCCGCCGCTACCC
CCCGCCGCCGGGTTCGTGATGCCCCCCTGCACCCACCGCGGAGCCCCCCC
CGCCGGCAGTGGAAGAGGGCGAGGGCACACGGCCGTCGAAGAGGGGGAGA
GAACAGCAGCGGCGGAGGCGGAGTGCCCGGAGTGCGCCGCGATTGCCGCC
GCGCACGTGCTAGCCGGCGCCGGCGCCGCCACCACCGGTGGGCGGCTGCA
ACAGCAGCAGGGGAGAGGAACCGACGTCGTCGACGTCTGGGCGGGTTCCT
CGCTGGGGGTTCTCAACGCAGACGCGCTGCACAGGTCGCTGACCTTCCTG
CAGCCCCGGGACCTGCTAGAGCTGGCGCAGGCGTCGAGGGGGGCCCGGGA
GGCGGCGGACTCGCAGCTGGTGTGGAGGGAGGTGTGGTGGGCGAGGTTCG
GAGCGATCTGGGAGTCGGAGATCTGCAAGAAGGCGGCGCGGAGATGGCAC
CTGCACGATTGGAACCCCAAGTCGTCTGCGGTAACTCAGGTCAGAGTTCT
CAGCTGTTTTTTTTTGCGGGGGGGACGGCGGTCGGATGGGTTTGCTCGTG
TATTGAAGCGTGTTCATTCTCCGTTGCGTTGGTGCCACCTTGAGTTGTTG
GGCCGGCGGCAAGTGCTGGGTGTCCATGCTGCTCATCGCGTGTGTTGTTA
TTTGTTGTGTAGTTTGTGCCAATGGCGAGTCGGTCTGTTTGCGACACCTC
AGAACAGATACAAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11059:303..1316-

>mRNA_Ecto-sp9_F_contig11059.929.1 ID=mRNA_Ecto-sp9_F_contig11059.929.1|Name=mRNA_Ecto-sp9_F_contig11059.929.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1890bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11059:303..1316- (Ectocarpus species9 EcSCA_722f female)
ATGTGCGCCAGGATCGCCGCGCAGCAGCGGCAGCGGGCCTCGGCCGCGAG
GCGCCTGCGCCAGGCGGAGGACGAGCGCAGGCTCGAGAGCTTGGTGGCGG
GGAGGACTGCGATGATGATCCGGCCGCTGGACCTGTCGGTGAACAACCAC
CTGCAACAGCTGCGCGCGTCGGTGGACGCGTCGTGGTCGTCTTTCTCGAC
GGCCTGGGACGCGAGACGGGCGAGGGGTAGCGGGTCGGGAAGCACCGAAG
GCGGCGGGCTGCTGTCGGATGCGAAGGCGACTGCTGCGCCGCCGCTACCC
CCCGCCGCCGGGTTCGTGATGCCCCCCTGCACCCACCGCGGAGCCCCCCC
CGCCGGCAGTGGAAGAGGGCGAGGGCACACGGCCGTCGAAGAGGGGGAGA
GAACAGCAGCGGCGGAGGCGGAGTGCCCGGAGTGCGCCGCGATTGCCGCC
GCGCACGTGCTAGCCGGCGCCGGCGCCGCCACCACCGGTGGGCGGCTGCA
ACAGCAGCAGGGGAGAGGAACCGACGTCGTCGACGTCTGGGCGGGTTCCT
CGCTGGGGGTTCTCAACGCAGACGCGCTGCACAGGTCGCTGACCTTCCTG
CAGCCCCGGGACCTGCTAGAGCTGGCGCAGGCGTCGAGGGGGGCCCGGGA
GGCGGCGGACTCGCAGCTGGTGTGGAGGGAGGTGTGGTGGGCGAGGTTCG
GAGCGATCTGGGAGTCGGAGATCTGCAAGAAGGCGGCGCGGAGATGGCAC
CTGCACGATTGGAACCCCAAGTCGTCTGCGGTAACTCAGATGTGCGCCAG
GATCGCCGCGCAGCAGCGGCAGCGGGCCTCGGCCGCGAGGCGCCTGCGCC
AGGCGGAGGACGAGCGCAGGCTCGAGAGCTTGGTGGCGGGGAGGACTGCG
ATGATGATCCGGCCGCTGGACCTGTCGGTGAACAACCACCTGCAACAGCT
GCGCGCGTCGGTGGACGCGTCGTGGTCGTCTTTCTCGACGGCCTGGGACG
CGAGACGGGCGAGGGGTAGCGGGTCGGGAAGCACCGAAGGCGGCGGGCTG
CTGTCGGATGCGAAGGCGACTGCTGCGCCGCCGCTACCCCCCGCCGCCGG
GTTCGTGATGCCCCCCTGCACCCACCGCGGAGCCCCCCCCGCCGGCAGTG
GAAGAGGGCGAGGGCACACGGCCGTCGAAGAGGGGGAGAGAACAGCAGCG
GCGGAGGCGGAGTGCCCGGAGTGCGCCGCGATTGCCGCCGCGCACGTGCT
AGCCGGCGCCGGCGCCGCCACCACCGGTGGGCGGCTGCAACAGCAGCAGG
GGAGAGGAACCGACGTCGTCGACGTCTGGGCGGGTTCCTCGCTGGGGGTT
CTCAACGCAGACGCGCTGCACAGGTCGCTGACCTTCCTGCAGCCCCGGGA
CCTGCTAGAGCTGGCGCAGGCGTCGAGGGGGGCCCGGGAGGCGGCGGACT
CGCAGCTGGTGTGGAGGGAGGTGTGGTGGGCGAGGTTCGGAGCGATCTGG
GAGTCGGAGATCTGCAAGAAGGCGGCGCGGAGATGGCACCTGCACGATTG
GAACCCCAAGTCGTCTGCGGTAACTCAGCGTGTTCATTCTCCGTTGCGTT
GGTGCCACCTTGAGTTGTTGGGCCGGCGGCAAGTGCTGGGTGTCCATGCT
GCTCATCGCGTGTGTTGTTATTTGTTGTGTAGTTTGTGCCAATGGCGAGT
CGGTCTGTTTGCGACACCTCAGAACAGATACAACCGTGTTCATTCTCCGT
TGCGTTGGTGCCACCTTGAGTTGTTGGGCCGGCGGCAAGTGCTGGGTGTC
CATGCTGCTCATCGCGTGTGTTGTTATTTGTTGTGTAGTTTGTGCCAATG
GCGAGTCGGTCTGTTTGCGACACCTCAGAACAGATACAAC
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