mRNA_Ecto-sp9_F_contig11007.894.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11007.894.1
Unique NamemRNA_Ecto-sp9_F_contig11007.894.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11007.894.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J909_9PHAE)

HSP 1 Score: 296 bits (759), Expect = 3.420e-92
Identity = 148/154 (96.10%), Postives = 152/154 (98.70%), Query Frame = 3 
Query:    3 MVAPGWSLNHAKLRTMEDERDVLLVQERLLSDLKATMTPLERLAQEGRGTEGLLAELAERRRIAETWTTDIVDPSELYRQASGSFLWEGCLRLMQCCEFDEPIVAKRLIRSIIWREVPSVSRGGSKCRAQVFISAMRDRPGEAEVDDVRQELDR 464
            MVAPGWSLNHAKLRTMEDERDVLLVQERLLS+LKATM PLERLAQEGRGTEGL+AEL+ERRRIAETWTTDIVDPSELYRQASGSFLWEGCLRLMQCCEFDEPIVAKRLIRSIIWREVPSVSRGGSKCRAQVFIS+MRDRPGE EVDDVRQELDR
Sbjct:  627 MVAPGWSLNHAKLRTMEDERDVLLVQERLLSELKATMAPLERLAQEGRGTEGLIAELSERRRIAETWTTDIVDPSELYRQASGSFLWEGCLRLMQCCEFDEPIVAKRLIRSIIWREVPSVSRGGSKCRAQVFISSMRDRPGEVEVDDVRQELDR 780
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BLAST of mRNA_Ecto-sp9_F_contig11007.894.1 vs.
Match: Nucleoporin_N (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M6_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 2.910e-63
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 3 
Query:    3 MVAPGWSLNHAKLRTMEDERDVLLVQERLLSDLKATMTPLERLAQEGRGTEGLLAELAERRRIAETWTTDIVDPSELYRQASGSFLWEGCLRLMQCCEFDEPIVAKRLIR 332
            MVAPGWSLNHAKLRTMEDERDVLLVQERLLSDLKATMTPLERLAQEGRGTEGLLAELAERRRIAETWTTDIVDPSELYRQASGSFLWEGCLRLMQCCEFDEPIVAK+LIR
Sbjct: 1148 MVAPGWSLNHAKLRTMEDERDVLLVQERLLSDLKATMTPLERLAQEGRGTEGLLAELAERRRIAETWTTDIVDPSELYRQASGSFLWEGCLRLMQCCEFDEPIVAKKLIR 1257
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11007.894.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.420e-9296.10protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Nucleoporin_N2.910e-6399.09domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11007contigEcto-sp9_F_contig11007:1666..3966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size466
Cds size450
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11007.894.1prot_Ecto-sp9_F_contig11007.894.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11007 1682..3966 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928336.5133266-UTR-Ecto-sp9_F_contig11007:1665..16811622928336.5133266-UTR-Ecto-sp9_F_contig11007:1665..1681Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11007 1666..1681 +
1692277838.1709006-UTR-Ecto-sp9_F_contig11007:1665..16811692277838.1709006-UTR-Ecto-sp9_F_contig11007:1665..1681Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11007 1666..1681 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928336.5288737-CDS-Ecto-sp9_F_contig11007:1681..18301622928336.5288737-CDS-Ecto-sp9_F_contig11007:1681..1830Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11007 1682..1830 +
1692277838.181555-CDS-Ecto-sp9_F_contig11007:1681..18301692277838.181555-CDS-Ecto-sp9_F_contig11007:1681..1830Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11007 1682..1830 +
1622928336.5418189-CDS-Ecto-sp9_F_contig11007:2595..27611622928336.5418189-CDS-Ecto-sp9_F_contig11007:2595..2761Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11007 2596..2761 +
1692277838.1905882-CDS-Ecto-sp9_F_contig11007:2595..27611692277838.1905882-CDS-Ecto-sp9_F_contig11007:2595..2761Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11007 2596..2761 +
1622928336.5671756-CDS-Ecto-sp9_F_contig11007:3831..39661622928336.5671756-CDS-Ecto-sp9_F_contig11007:3831..3966Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11007 3832..3966 +
1692277838.1992383-CDS-Ecto-sp9_F_contig11007:3831..39661692277838.1992383-CDS-Ecto-sp9_F_contig11007:3831..3966Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11007 3832..3966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11007.894.1

>prot_Ecto-sp9_F_contig11007.894.1 ID=prot_Ecto-sp9_F_contig11007.894.1|Name=mRNA_Ecto-sp9_F_contig11007.894.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=150bp
MEPEPRQAPHDGGRARCAARAGKASLRPEGHDDSARALGSGGPWHRGSAR
RAGRETAYRGDVDDRHCRPLGAVQAGLGFLPVGGLPPADAVLRVRRADRG
EEAHQVHYLARGTLREPRGLQVPRAGVHLRHEGSPGRSGSGRCPAGVGQG
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mRNA from alignment at Ecto-sp9_F_contig11007:1666..3966+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11007.894.1 ID=mRNA_Ecto-sp9_F_contig11007.894.1|Name=mRNA_Ecto-sp9_F_contig11007.894.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2301bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11007:1666..3966+ (Ectocarpus species9 EcSCA_722f female)
AGATGGTGGCTCCCGGATGGAGCCTGAACCACGCCAAGCTCCGCACGATG
GAGGACGAGCGAGATGTGCTGCTCGTGCAGGAAAGGCTTCTCTCCGACCT
GAAGGCCACGATGACTCCGCTCGAGCGCTTGGCTCAGGAGGGCCGTGGCA
CCGAGGGTCTGCTCGGTGAGTTGTTGGCGGAAAGCCACGTTGTGAATCCA
TCGCCGGTTTTACAGAAATCAGCTTGTGAATCCATCTTGGGGATCATTTT
TTGGAACCCATCGCAAGGTTCAAGGAAATCACTTCTATGAAATCGTGGCA
AGTTTACGGAAATTACTCCTATGAATTCGTCGCAAGTTTACGGAAGTCAC
GTTGTGAACCCGTGGCGAATATATCCCGAACCTCTCTGTGTCTGTAGTCG
GGTTGAGGGATGAAGTTGAACCTATTGCTTCTATGAGAAAGGACGAAGAT
AGGAGCTTTCCGAGAGTGGCTTTCTTGTCTCTGCGGGGCGTCGAGTGAGG
GCGAGTCTATTGTAGGTCCTTGAGAAGGGAAGGGCCCATCCAGTGCGGCT
GTCGGCATGTCGTCCGGGTTGTACGCGGAAAAGAAAGATTGGTATGCCAT
GGGCAAGAGCGAAGGTTCAGCCTCGCTTCCCACGTTTTCCCCCGCGGTCC
TCATCCCGGCTTCCCACGTGTTGGCGAGCCAATGCACCGCCACGTATCAG
AACTGACGATGACGACGACAAGTTTTACCATCACTGCTGCTGCTATTATA
GTGCAATACTACAAACACCTGCCACCGCTGCTGCCATGAACGGCACCGCT
GTCTACGCCGAAAACTACCATCACACTGCTCCACTTACACATCAACAATG
AATCCTAACCAACAACAACCCCGCCCCCGCCGCCGCCGCCGCCGAATGAA
CTTTACCGGTTACGACGACACCTTTTCCAGCCGAGCTGGCAGAGAGACGG
CGTATCGCGGAGACGTGGACGACCGACATTGTAGACCCCTCGGAGCTGTA
CAGGCAGGCCTCGGGTTCCTTCCTGTGGGAGGGTTGCCTCCGGCTGATGC
AGTGTTGCGAGTTCGACGAGCCGATCGTGGCGAAGAGGCTCATCAGGTGC
GTGCATGCGTGCGTGTGTTTGTGTGTGTGGAAGCGTTATGTTTCTGCTTT
GGTGTTTGAGGGGGCTTGTCAGGTGCGTGTGTCCGTGTGTGTGTGTAGAC
GGGTTGTGGTTCTGTTTTGGTGTTTGAAGGGGCTCATCAGGGTGCGTTCA
TGCGTTTGCTCTTTGTGTGTGTGTGGAAGCGTTGTGCTTCTCTGTTTGGG
TGTTGTGGCATCGACCGCGCTTAATCGGGTGACGCGATGGTTAGGCTGGC
AGTCAGTCTTGTAGCGGGGCGGCGGGACAAAGGAAGGATACGCGGGCACG
CTTTCTATTCCGCGGGGCTCCCTGGAAAAATTAAGGCGGGGGGGATATGG
GACGAAAGGGTCCAGCAAGCGTGTTTTGGTGTAGTTTGGGTCGATCTAAA
ATATTCCAGAGGAAAAAAACAACACTTCGAACAAACTCCTTTGTGGTCGT
ACTGCCGTAGGTTGACGTCGGCTGATGACTCCAGAAAATATAGTAGCGAA
GGAAAGGTGTAATATTAGCGTCCAGGGAATGGATGAGATGACACACACAA
GCATACACAGACCACCACCAAGAAAGTGCTGCTGTCATCGTGTAGTTTTT
TTCCTGGGTTAGCGCAGGTTTATGGGAACGGAGAAATGGAGTTGACACGC
GTATTGATGGGAGGGATACGAATAGGATAATATGTGTCGAGGTGTAAATA
CGTCGCCTCTCCATCCCGTACATGTAGCAACCGAAGAGCCTCCTCCTCCC
GACCTTGGGCAAGGTAGGAAGGAGGATTGGCCATCGGTAATCGATCCAGT
GTGAACAATCCTCCGGCCTCTCGAGGACGCGTGGCCAATGATCTAGCGGC
CTAAGGCATGGCTAAACATGAGTGCCCGATGGCCAGCTTCTGGTTCATCC
TCGTGAAACGAAGCCTGGGCCGGCTAAAACCCGGCATATCGCTCCGTCCC
GGCTTTGCTGGGGTGCGAGGACAATGGTCTACCGAATCCTAGGCATGCGT
TTACATAAGTACCCCCCCTGGAAGGTCCATTATCTGGCAACTGACGAGTA
CCCCCCCCCCCCTCAGGTCCATTATCTGGCGAGAGGTACCCTCCGTGAGC
CGAGGGGGCTCCAAGTGCCGCGCGCAGGTGTTCATCTCCGCCATGAGGGA
TCGCCCGGGCGAAGCGGAAGTGGACGATGTCCGGCAGGAGTTGGACAGGG
G
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11007:1666..3966+

>mRNA_Ecto-sp9_F_contig11007.894.1 ID=mRNA_Ecto-sp9_F_contig11007.894.1|Name=mRNA_Ecto-sp9_F_contig11007.894.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=900bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11007:1666..3966+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGCCTGAACCACGCCAAGCTCCGCACGATGGAGGACGAGCGAGATG
TGCTGCTCGTGCAGGAAAGGCTTCTCTCCGACCTGAAGGCCACGATGACT
CCGCTCGAGCGCTTGGCTCAGGAGGGCCGTGGCACCGAGGGTCTGCTCGA
TGGAGCCTGAACCACGCCAAGCTCCGCACGATGGAGGACGAGCGAGATGT
GCTGCTCGTGCAGGAAAGGCTTCTCTCCGACCTGAAGGCCACGATGACTC
CGCTCGAGCGCTTGGCTCAGGAGGGCCGTGGCACCGAGGGTCTGCTCGCC
GAGCTGGCAGAGAGACGGCGTATCGCGGAGACGTGGACGACCGACATTGT
AGACCCCTCGGAGCTGTACAGGCAGGCCTCGGGTTCCTTCCTGTGGGAGG
GTTGCCTCCGGCTGATGCAGTGTTGCGAGTTCGACGAGCCGATCGTGGCG
AAGAGGCTCATCAGCCGAGCTGGCAGAGAGACGGCGTATCGCGGAGACGT
GGACGACCGACATTGTAGACCCCTCGGAGCTGTACAGGCAGGCCTCGGGT
TCCTTCCTGTGGGAGGGTTGCCTCCGGCTGATGCAGTGTTGCGAGTTCGA
CGAGCCGATCGTGGCGAAGAGGCTCATCAGGTCCATTATCTGGCGAGAGG
TACCCTCCGTGAGCCGAGGGGGCTCCAAGTGCCGCGCGCAGGTGTTCATC
TCCGCCATGAGGGATCGCCCGGGCGAAGCGGAAGTGGACGATGTCCGGCA
GGAGTTGGACAGGGGGTCCATTATCTGGCGAGAGGTACCCTCCGTGAGCC
GAGGGGGCTCCAAGTGCCGCGCGCAGGTGTTCATCTCCGCCATGAGGGAT
CGCCCGGGCGAAGCGGAAGTGGACGATGTCCGGCAGGAGTTGGACAGGGG
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