mRNA_Ecto-sp9_F_contig11005.892.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11005.892.1 vs.
Match: Putative (lipoprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI59_ECTSI) HSP 1 Score: 501 bits (1290), Expect = 7.530e-176 Identity = 251/260 (96.54%), Postives = 254/260 (97.69%), Query Frame = 1
Query: 1 MKAPSIYRAAVVGVVACSCTQEAAGFTAVAPRAASRRGRAQAATTSALRNAPTSAGCGLSGIASRAACRGPASLVMESSSYSGEYPSRRGLVFPTDKEEGWFDSASVGSPRVHRYYHDEGNRWVMWYHGQDTEWNKEGKGVMDVGTGSRIGRAESTDGLTWRRTAGQMAMSSVLDKNTEQWWGFDTAHVGLGDVNLGASSRVATESSVYFMYYFGGDYEETDVQAEFGLSNPVVCGDSNAPPKGVRMRIGVALSQDGLNW 780
MKAPSIYRAAVVGVV CSCTQEAAGFTA APRAASRRGRAQAAT SALRNAPTS+GCGLSGIASRAACRGPA L M+SSSYSGEYPSRRGLVFPTDKEEGWFDSASVGSPRVHRYYHDEGNRWVMWYHGQDTEWNKEGKGVM+VGTG RIGRAESTDGLTWRRTAGQMAMSSVLDKNTEQWWGFDTAHVGLGDVNLGASSRVATESSVYFMYYFGGDYEETDVQAEFGLSNPVVCGDSNAPPKGVRMRIGVALSQDGLNW
Sbjct: 1 MKAPSIYRAAVVGVVVCSCTQEAAGFTAAAPRAASRRGRAQAAT-SALRNAPTSSGCGLSGIASRAACRGPAPLFMDSSSYSGEYPSRRGLVFPTDKEEGWFDSASVGSPRVHRYYHDEGNRWVMWYHGQDTEWNKEGKGVMNVGTG-RIGRAESTDGLTWRRTAGQMAMSSVLDKNTEQWWGFDTAHVGLGDVNLGASSRVATESSVYFMYYFGGDYEETDVQAEFGLSNPVVCGDSNAPPKGVRMRIGVALSQDGLNW 258
BLAST of mRNA_Ecto-sp9_F_contig11005.892.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FFL6_9STRA) HSP 1 Score: 147 bits (370), Expect = 2.810e-37 Identity = 76/162 (46.91%), Postives = 96/162 (59.26%), Query Frame = 1
Query: 307 DSASVGSPRVHRYYHDEGNRWVMWYHGQDTEWNKEGKGVMDVGTGSRIGRAESTDGLTWRRTAGQMAMSSVLDKNTEQWWGFDTAHVGLGDVNLGASSRVATESSVYFMYYFGGDYEETDVQAEFGLSNPVVCGDSNAPP----KGVRMRIGVALSQDGLNW 780
D S+G PRVHRY D+G WVMW+ G+D + +E V+ + TG RI RA S DGL W GQ + LD +T+ WWGFDTAHVG+GDV L +S ++ T+ VY +YYFGG YE A + GD P G+ MRIGVA+SQDG W
Sbjct: 127 DLKSLGMPRVHRYARDDGEEWVMWFQGRDDDIAEE---VVSLSTG-RIFRATSNDGLRWEIEKGQQTNGASLDVDTDAWWGFDTAHVGVGDVKLTSSEKIMTQGGVYLLYYFGGTYEAKPATAFMNM------GDKMPPTVPEVTGMVMRIGVAMSQDGKTW 278
BLAST of mRNA_Ecto-sp9_F_contig11005.892.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGF3_9STRA) HSP 1 Score: 139 bits (349), Expect = 1.950e-34 Identity = 81/178 (45.51%), Postives = 107/178 (60.11%), Query Frame = 1
Query: 271 LVFPTDKEEGWFDSASVGSPRVHRYYHD-----EGNRWVMWYHGQDTEWNKEGKGVMDVGTGSRIGRAESTDGLTWRRTAGQMAMSSV----LDKNTEQWWGFDTAHVGLGDVNLGASS-RVATESSVYFMYYFGGDYEETDVQAEFGLSNPVVCGDSNAPPKGVRMRIGVALSQDGL 774
+VF + FD++ +G+ RVHRY D G +VMWYHG+D+ ++ EGK + + TG RIGRA S +GL W R+ A V L N E WWGFDTAHVGLG V L S+ V TE VY MYY GG++EET + ++ + VV G A G+ M+IG+ALSQDG+
Sbjct: 70 VVFRPSTDPEAFDNSKIGAARVHRYARDGNDDDTGTEYVMWYHGRDSGFDAEGK-LPPLTTG-RIGRATSRNGLYWERSEEGSASEDVSGVSLGLNNESWWGFDTAHVGLGQVMLPMSTPAVMTEGGVYLMYYMGGNFEETSI-GQYLDKDIVVDGMEEATIMGMNMKIGIALSQDGI 244
BLAST of mRNA_Ecto-sp9_F_contig11005.892.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1MXR1_HEMAN) HSP 1 Score: 132 bits (333), Expect = 2.130e-33 Identity = 105/267 (39.33%), Postives = 141/267 (52.81%), Query Frame = 1
Query: 19 YRAAVVGVVACSCTQEAAGFTAV-APRAASRRGRAQAATTSALRNAPT---SAGCGLSGIASRAACRGPASLVMESSSYSGEYPSRRGLVFPTDKEEGWFDSASVGSPRVHRYYHDEGNR-WVMWYHGQDTEWNKEGKGVMDVGTGSRIGRAESTDGLTWRRTAGQMAMSSVLDKNTEQWWGFDTAHVGLGDVNLGASSRVATESSVY-------FMYYFGGDYEETDVQ-AEFGLSNPVVCGDSNAPPKGVRMRIGVALSQDGLNW 780
YRA V+ VV SC Q A+GF ++ +P SR + +S+L P SAG G R R A ++M +GE ++ P E +FDS S P + RY EG+ W MWY G+D++++ E G+ TG R G ESTDG+ W+R AG + SVLD NTE+WWG+DT H GDV + A+ +V S+V FM+ GGD EE D+ A FG KG+RMRIG+ALS DGL+W
Sbjct: 6 YRA-VLAVVLASCMQSASGFMSLPSPGLGSR-----ISPSSSLPFRPRGAHSAGAG------RGRAR-QAEILM-----AGELKGPGLVLGPRGGSEEFFDSKSFARPVIKRYQTVEGDENWRMWYSGRDSDFDPEAIGIA---TG-RTGLCESTDGIEWKRVAGDEPLGSVLDFNTEEWWGYDTVHTMAGDVQIIATDKVRGSSAVSDAGYGVNFMFVSGGDAEEVDMSGASFGGKTL----PDGTLIKGLRMRIGLALSYDGLHW 246
BLAST of mRNA_Ecto-sp9_F_contig11005.892.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZX69_TRICV) HSP 1 Score: 129 bits (324), Expect = 7.850e-33 Identity = 77/182 (42.31%), Postives = 105/182 (57.69%), Query Frame = 1
Query: 271 LVFPTDKEEGWFDSASVGSPRVHRYYHD-EGN------RWVMWYHGQDTEWNKEGKGVMDVGTGSRIGRAESTDGLTWRR----TAGQMAMSSVLDKNTEQWWGFDTAHVGLGDVNLGASS-RVATESSVYFMYYFGGDYEETDVQAEFGLSNPVVCGDSNAPPKGVRMRIGVALSQDGLNW 780
++ PT + FDS S+G+ RVHRY D +G +VMWYHG+ N +G + + TG RIGRA S +GL W + + + L NTE WWGFDTAHVGLG V L S+ V E VY MYY GG +EET + + + +P D +A KG+++ +GVA+SQDG+ W
Sbjct: 10 VLLPTIDDPAAFDSHSIGTARVHRYARDVDGTDLAADAEYVMWYHGRCQGLNADGD-LAPLSTG-RIGRATSKNGLVWEKCQKGSGSEDGKGVSLGLNTESWWGFDTAHVGLGQVMLPMSTPAVLAEGGVYIMYYMGGSHEETAISSY--MDDPSGVPD-DATIKGMKLSVGVAVSQDGMTW 186
BLAST of mRNA_Ecto-sp9_F_contig11005.892.1 vs.
Match: Hypothetical (protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A6U6BTW8_GUITH) HSP 1 Score: 134 bits (336), Expect = 1.310e-32 Identity = 75/180 (41.67%), Postives = 101/180 (56.11%), Query Frame = 1
Query: 265 RGLVFPTDKEEGWFDSASVGSPRVHRYYHDEGNRWVMWYHGQDTEWNKEGKGVMDVGTGSRIGRAESTDGLTWRRTAGQMAMSSVLDKNTEQWWGFDTAHVGLGDVNLGASSRVA----TESSVYFMYYFGGDYEETDVQAEFGLSNPVVCGDSNAPP----KGVRMRIGVALSQDGLNW 780
+GLV +++ FDS +P V RY ++G W MWYHG+D + G V TG RIG AES DG+ W R G + +VL N E+WWGFDT+HVG+GDV + ++ + +V FMY+FGGD EE DV + G P KG+RMRIG+ LS DG++W
Sbjct: 122 KGLVLGPGRQDR-FDSPRFANPVVQRYKDEDGENWRMWYHGRDLNF---GNDVFSQPTG-RIGLAESPDGVHWERVDGDEDLGAVLTPNKEEWWGFDTSHVGVGDVQGIKTDKIRGSGDRQGTVQFMYFFGGDQEEVDVGG-------IEMGGQKIPEGVAVKGLRMRIGLCLSFDGVHW 289
BLAST of mRNA_Ecto-sp9_F_contig11005.892.1 vs.
Match: Uncharacterized (protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JEP0_GUITC) HSP 1 Score: 132 bits (331), Expect = 1.350e-32 Identity = 72/167 (43.11%), Postives = 94/167 (56.29%), Query Frame = 1
Query: 304 FDSASVGSPRVHRYYHDEGNRWVMWYHGQDTEWNKEGKGVMDVGTGSRIGRAESTDGLTWRRTAGQMAMSSVLDKNTEQWWGFDTAHVGLGDVNLGASSRVA----TESSVYFMYYFGGDYEETDVQAEFGLSNPVVCGDSNAPP----KGVRMRIGVALSQDGLNW 780
FDS +P V RY ++G W MWYHG+D + G V TG RIG AES DG+ W R G + +VL N E+WWGFDT+HVG+GDV + ++ + +V FMY+FGGD EE DV + G P KG+RMRIG+ LS DG++W
Sbjct: 20 FDSPRFANPVVQRYKDEDGENWRMWYHGRDLNF---GNDVFSQPTG-RIGLAESPDGVHWERVDGDEDLGAVLTPNKEEWWGFDTSHVGVGDVQGIKTDKIRGSGDRQGTVQFMYFFGGDQEEVDVGG-------IEMGGQKIPEGVAVKGLRMRIGLCLSFDGVHW 175
BLAST of mRNA_Ecto-sp9_F_contig11005.892.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C6R2_9STRA) HSP 1 Score: 132 bits (333), Expect = 2.650e-32 Identity = 72/163 (44.17%), Postives = 94/163 (57.67%), Query Frame = 1
Query: 316 SVGSPRVHRY-YHDEGNRWVMWYHGQDTEWNKEGKGVMDVGTGSRIGRAESTDGLTWRRTAGQMAMSSVLDKNTEQWWGFDTAHVGLGDVNLGASSRVATESSVYFMYYFGGDYEETDVQAEFGL------SNPVVCGDSNAPP-KGVRMRIGVALSQDGLNW 780
S+G PRVHRY E W MW+ +D E + V+ + TG RI A S +GL W+ + G SS D NTE+WWGFDTAHVG+GDV L S +V T + ++ +YYFGG YEE + S D+ AP G+ +RIGVA+SQDG+NW
Sbjct: 84 SLGMPRVHRYNISPEVEEWAMWFQARDDEIEDQ---VVKLSTG-RIYHATSANGLLWKISEGMGTKSSSFDCNTEEWWGFDTAHVGVGDVRLAQSDKVQTAAGIHMLYYFGGSYEERPAGDFYATLEGSSSSKEEDDADAEAPTLTGMEVRIGVAISQDGINW 242
BLAST of mRNA_Ecto-sp9_F_contig11005.892.1 vs.
Match: Hypothetical (protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q3Y3_9EUKA) HSP 1 Score: 129 bits (325), Expect = 7.650e-32 Identity = 72/176 (40.91%), Postives = 102/176 (57.95%), Query Frame = 1
Query: 256 PSRRGLVFPTDKEEGWFDSASVGSPRVHRYYHDE-GNRWVMWYHGQDTEWNKEGKGVMDVGTGSRIGRAESTDGLTWRRTAGQMAMSSVLDKNTEQWWGFDTAHVGLGDVNLGASSRVATESSVYFMYYFGGDYEETDVQAEFGLSNPVVCGDSNAPPKGVRMRIGVALSQDGLNW 780
P G V P E+GWFD S+GS V R+ + G+RW+MWY + +++K V+ + +G +G A+S DG+ W R AG +VL N++ WW FDT HVG+GDV++ +SS V +Y+M+YFGGD E AE G + VV G M IG+ALS DG++W
Sbjct: 11 PEAVGAVEPP--EDGWFDGVSLGSCVVRRFTDEMVGDRWMMWYSARPADFDKS---VLPIASGC-VGFAQSKDGINWNRLAGDDRAGAVLGPNSDDWWWFDTQHVGVGDVHVMSSSVVQNSLGLYWMFYFGGDANEGQPLAEGG--DAVV---------GANMAIGIALSNDGIHW 169
BLAST of mRNA_Ecto-sp9_F_contig11005.892.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ER76_TRICV) HSP 1 Score: 129 bits (325), Expect = 2.340e-31 Identity = 78/182 (42.86%), Postives = 105/182 (57.69%), Query Frame = 1
Query: 271 LVFPTDKEEGWFDSASVGSPRVHRYYHD-EGN------RWVMWYHGQDTEWNKEGKGVMDVGTGSRIGRAESTDGLTWRR----TAGQMAMSSVLDKNTEQWWGFDTAHVGLGDVNLGASS-RVATESSVYFMYYFGGDYEETDVQAEFGLSNPVVCGDSNAPPKGVRMRIGVALSQDGLNW 780
++ PT + FDS S+G+ RVHRY D +G +VMWYHG+ N +G + + TG RIGRA S +GL W + + + L NTE WWGFDTAHVGLG V L S+ V E VY +YY GG +EET + + + +P ++A KG+ +RIGVA+SQDGL W
Sbjct: 10 VLLPTIDDPAAFDSHSIGTARVHRYARDVDGTDLAADAEYVMWYHGRCQGLNADGD-LAPLSTG-RIGRATSKNGLVWEKCQKGSGSEDGKGVSLGLNTESWWGFDTAHVGLGQVMLPMSTPAVLAEGGVYLLYYMGGTHEETAISSY--VEDPTGI-PTDATIKGMNLRIGVAMSQDGLTW 186 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11005.892.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11005.892.1 >prot_Ecto-sp9_F_contig11005.892.1 ID=prot_Ecto-sp9_F_contig11005.892.1|Name=mRNA_Ecto-sp9_F_contig11005.892.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=261bp MKAPSIYRAAVVGVVACSCTQEAAGFTAVAPRAASRRGRAQAATTSALRNback to top mRNA from alignment at Ecto-sp9_F_contig11005:437..3230+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11005.892.1 ID=mRNA_Ecto-sp9_F_contig11005.892.1|Name=mRNA_Ecto-sp9_F_contig11005.892.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2794bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11005:437..3230+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11005:437..3230+ >mRNA_Ecto-sp9_F_contig11005.892.1 ID=mRNA_Ecto-sp9_F_contig11005.892.1|Name=mRNA_Ecto-sp9_F_contig11005.892.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1566bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11005:437..3230+ (Ectocarpus species9 EcSCA_722f female)back to top |