mRNA_Ecto-sp9_F_contig11000.890.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11000.890.1
Unique NamemRNA_Ecto-sp9_F_contig11000.890.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11000.890.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL38_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.640e-19
Identity = 45/59 (76.27%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:  610 FDAEKWKRAAGRQWGXXXXXXXXXXXXWRRDGDGNPFKGALGSYDALLEEHYLKMSFGQ 786
            FDAEKWKRAAG+QW             WRRDGDGNPFKGALGSYDALLEEHYLKMSFGQ
Sbjct:  179 FDAEKWKRAAGQQWEKVTGRVDGFIDGWRRDGDGNPFKGALGSYDALLEEHYLKMSFGQ 237
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11000.890.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.640e-1976.27protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11000contigEcto-sp9_F_contig11000:3103..3888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionMpv17/PMP22
Ec32 orthologEc-04_004070.1
Hectar predicted targeting categoryother localisation
Exons1
Model size788
Cds size786
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928335.7193894-CDS-Ecto-sp9_F_contig11000:3102..38881622928335.7193894-CDS-Ecto-sp9_F_contig11000:3102..3888Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11000 3103..3888 +
1692277838.0843272-CDS-Ecto-sp9_F_contig11000:3102..38881692277838.0843272-CDS-Ecto-sp9_F_contig11000:3102..3888Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11000 3103..3888 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11000.890.1prot_Ecto-sp9_F_contig11000.890.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11000 3103..3888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11000.890.1

>prot_Ecto-sp9_F_contig11000.890.1 ID=prot_Ecto-sp9_F_contig11000.890.1|Name=mRNA_Ecto-sp9_F_contig11000.890.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=262bp
AVVRRWLRCVCEHEASGLVEHTHHNLYPSTGSFVEAEMRTCRGLLLVFLA
GPYLACLADEGASIPPAAAAAAAAAADAAEDEVFSKLAEAEQAANAAAAA
AQRAAASLEDMETRAQEENEGSEERVDSNDHADGGGAAAEDNNAALEAAA
AAAAAAAADAAAAADAAAAAAEEIGDEDDDSVDSAAAAAERALGDEDGGG
REGFDAEKWKRAAGRQWGRVTGRVDGFIDGWRRDGDGNPFKGALGSYDAL
LEEHYLKMSFGQ
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mRNA from alignment at Ecto-sp9_F_contig11000:3103..3888+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11000.890.1 ID=mRNA_Ecto-sp9_F_contig11000.890.1|Name=mRNA_Ecto-sp9_F_contig11000.890.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=786bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11000:3103..3888+ (Ectocarpus species9 EcSCA_722f female)
GCGGTGGTGCGCCGCTGGCTCCGCTGTGTGTGTGAACATGAGGCTAGCGG
GCTGGTTGAACACACACACCACAACCTATACCCCAGCACTGGTAGCTTCG
TGGAGGCAGAGATGAGGACCTGTCGCGGCTTGTTACTCGTCTTCCTTGCT
GGCCCGTACTTGGCATGTCTGGCGGACGAAGGGGCATCGATCCCACCAGC
GGCGGCAGCAGCAGCAGCGGCGGCAGCAGATGCTGCTGAGGATGAGGTGT
TCTCCAAGCTAGCGGAGGCGGAACAGGCGGCTAACGCTGCTGCGGCCGCT
GCCCAGAGGGCAGCAGCCAGCCTAGAGGATATGGAGACCCGTGCGCAGGA
GGAGAATGAGGGCTCAGAAGAACGAGTAGATTCAAATGATCATGCAGATG
GTGGTGGGGCAGCAGCAGAGGACAACAACGCCGCGCTTGAGGCAGCAGCA
GCAGCGGCAGCAGCGGCAGCAGCAGACGCAGCAGCAGCAGCAGACGCTGC
AGCTGCCGCGGCAGAGGAAATCGGGGACGAAGACGACGACTCGGTGGATT
CGGCAGCGGCGGCAGCAGAGAGGGCACTTGGGGATGAAGACGGCGGCGGC
CGTGAGGGCTTCGACGCGGAGAAGTGGAAACGTGCGGCTGGACGGCAGTG
GGGGAGGGTGACGGGACGAGTGGACGGGTTCATCGACGGCTGGCGGAGGG
ACGGGGACGGTAACCCCTTCAAGGGGGCTCTGGGCAGCTACGACGCGCTG
CTGGAGGAGCACTACCTCAAGATGTCTTTCGGACAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11000:3103..3888+

>mRNA_Ecto-sp9_F_contig11000.890.1 ID=mRNA_Ecto-sp9_F_contig11000.890.1|Name=mRNA_Ecto-sp9_F_contig11000.890.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1572bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11000:3103..3888+ (Ectocarpus species9 EcSCA_722f female)
GCGGTGGTGCGCCGCTGGCTCCGCTGTGTGTGTGAACATGAGGCTAGCGG
GCTGGTTGAACACACACACCACAACCTATACCCCAGCACTGGTAGCTTCG
TGGAGGCAGAGATGAGGACCTGTCGCGGCTTGTTACTCGTCTTCCTTGCT
GGCCCGTACTTGGCATGTCTGGCGGACGAAGGGGCATCGATCCCACCAGC
GGCGGCAGCAGCAGCAGCGGCGGCAGCAGATGCTGCTGAGGATGAGGTGT
TCTCCAAGCTAGCGGAGGCGGAACAGGCGGCTAACGCTGCTGCGGCCGCT
GCCCAGAGGGCAGCAGCCAGCCTAGAGGATATGGAGACCCGTGCGCAGGA
GGAGAATGAGGGCTCAGAAGAACGAGTAGATTCAAATGATCATGCAGATG
GTGGTGGGGCAGCAGCAGAGGACAACAACGCCGCGCTTGAGGCAGCAGCA
GCAGCGGCAGCAGCGGCAGCAGCAGACGCAGCAGCAGCAGCAGACGCTGC
AGCTGCCGCGGCAGAGGAAATCGGGGACGAAGACGACGACTCGGTGGATT
CGGCAGCGGCGGCAGCAGAGAGGGCACTTGGGGATGAAGACGGCGGCGGC
CGTGAGGGCTTCGACGCGGAGAAGTGGAAACGTGCGGCTGGACGGCAGTG
GGGGAGGGTGACGGGACGAGTGGACGGGTTCATCGACGGCTGGCGGAGGG
ACGGGGACGGTAACCCCTTCAAGGGGGCTCTGGGCAGCTACGACGCGCTG
CTGGAGGAGCACTACCTCAAGATGTCTTTCGGACAGGCGGTGGTGCGCCG
CTGGCTCCGCTGTGTGTGTGAACATGAGGCTAGCGGGCTGGTTGAACACA
CACACCACAACCTATACCCCAGCACTGGTAGCTTCGTGGAGGCAGAGATG
AGGACCTGTCGCGGCTTGTTACTCGTCTTCCTTGCTGGCCCGTACTTGGC
ATGTCTGGCGGACGAAGGGGCATCGATCCCACCAGCGGCGGCAGCAGCAG
CAGCGGCGGCAGCAGATGCTGCTGAGGATGAGGTGTTCTCCAAGCTAGCG
GAGGCGGAACAGGCGGCTAACGCTGCTGCGGCCGCTGCCCAGAGGGCAGC
AGCCAGCCTAGAGGATATGGAGACCCGTGCGCAGGAGGAGAATGAGGGCT
CAGAAGAACGAGTAGATTCAAATGATCATGCAGATGGTGGTGGGGCAGCA
GCAGAGGACAACAACGCCGCGCTTGAGGCAGCAGCAGCAGCGGCAGCAGC
GGCAGCAGCAGACGCAGCAGCAGCAGCAGACGCTGCAGCTGCCGCGGCAG
AGGAAATCGGGGACGAAGACGACGACTCGGTGGATTCGGCAGCGGCGGCA
GCAGAGAGGGCACTTGGGGATGAAGACGGCGGCGGCCGTGAGGGCTTCGA
CGCGGAGAAGTGGAAACGTGCGGCTGGACGGCAGTGGGGGAGGGTGACGG
GACGAGTGGACGGGTTCATCGACGGCTGGCGGAGGGACGGGGACGGTAAC
CCCTTCAAGGGGGCTCTGGGCAGCTACGACGCGCTGCTGGAGGAGCACTA
CCTCAAGATGTCTTTCGGACAG
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