mRNA_Ecto-sp9_F_contig10996.862.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10996.862.1
Unique NamemRNA_Ecto-sp9_F_contig10996.862.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10996.862.1 vs.
Match: FCP1 (homology domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN5_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.530e-26
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    4 RKKVKPLKIIWDKHPRWHASNTLHVDDLSRNFALNPKNGVKVKAFRRKSDGR 159
            R +VKPLKIIWDK+PRWHASNTLHVDDLSRNFALNPKNGVKVKAFRRKSDGR
Sbjct:  209 RHQVKPLKIIWDKYPRWHASNTLHVDDLSRNFALNPKNGVKVKAFRRKSDGR 260
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BLAST of mRNA_Ecto-sp9_F_contig10996.862.1 vs.
Match: FCP1 (homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD9_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 4.830e-26
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    4 RKKVKPLKIIWDKHPRWHASNTLHVDDLSRNFALNPKNGVKVKAFRRKSDGR 159
            R +VKPLKIIWDK+PRWHASNTLHVDDLSRNFALNPKNGVKVKAFRRKSDGR
Sbjct:  287 RHQVKPLKIIWDKYPRWHASNTLHVDDLSRNFALNPKNGVKVKAFRRKSDGR 338
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BLAST of mRNA_Ecto-sp9_F_contig10996.862.1 vs.
Match: HAD-like (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHP5_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.250e-14
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    4 RKKVKPLKIIWDKHPRWHASNTLHVDDLSRNFALNPKNGVKVKAFRRKSDG 156
            R +VKPL IIW K P W  +NT HVDDL RNFALNP NG+KVKA+ R  DG
Sbjct:  211 RHQVKPLHIIWRKFPHWTEANTYHVDDLGRNFALNPANGIKVKAYYRGRDG 261
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BLAST of mRNA_Ecto-sp9_F_contig10996.862.1 vs.
Match: FCP1 (homology domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IHP9_PLABS)

HSP 1 Score: 74.7 bits (182), Expect = 1.480e-14
Identity = 30/43 (69.77%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:   13 VKPLKIIWDKHPRWHASNTLHVDDLSRNFALNPKNGVKVKAFR 141
            VKPLK+IW+K P+++A NTLH+DDLSRNFA+NP NG+K+ AFR
Sbjct:  238 VKPLKVIWNKFPQFNAKNTLHIDDLSRNFAMNPANGLKISAFR 280
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BLAST of mRNA_Ecto-sp9_F_contig10996.862.1 vs.
Match: Had (family iiid protein n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6KAF4_9APIC)

HSP 1 Score: 70.9 bits (172), Expect = 3.520e-14
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   13 VKPLKIIWDKHPR-WHASNTLHVDDLSRNFALNPKNGVKVKAFRRKS 150
            VK L++IW K P  W ASNTLH+DDLSRNFA NPKNG+KV A++R++
Sbjct:   31 VKALEVIWRKFPEYWSASNTLHIDDLSRNFAFNPKNGIKVSAYKREN 77
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BLAST of mRNA_Ecto-sp9_F_contig10996.862.1 vs.
Match: Protein-serine/threonine (phosphatase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWT3_9FLOR)

HSP 1 Score: 73.9 bits (180), Expect = 3.850e-14
Identity = 30/47 (63.83%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 HRKKVKPLKIIWDKHPRWHASNTLHVDDLSRNFALNPKNGVKVKAFR 141
            HR +VK L+IIW + P W+ASNT+H+DDLS+NFALNP++G+K+K FR
Sbjct:  277 HRHEVKALEIIWRRFPAWNASNTIHIDDLSKNFALNPQSGLKIKPFR 323
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BLAST of mRNA_Ecto-sp9_F_contig10996.862.1 vs.
Match: Protein-serine/threonine (phosphatase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZW18_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.660e-14
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:   13 VKPLKIIWDKHPRWHASNTLHVDDLSRNFALNPKNGVKVKAFRR 144
            VKPL++IWDK   W+A+NTLH+DDLSRNFALNP++GVK KA+ R
Sbjct:  264 VKPLRLIWDKVDGWNAANTLHLDDLSRNFALNPRSGVKCKAYHR 307
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BLAST of mRNA_Ecto-sp9_F_contig10996.862.1 vs.
Match: FCP1 (homology domain-containing protein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067MRP3_9AGAM)

HSP 1 Score: 72.0 bits (175), Expect = 1.110e-13
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   13 VKPLKIIWDKHPRWHASNTLHVDDLSRNFALNPKNGVKVKAFR 141
            VKPL+IIW K P W A NT+H+DDLSRNFALNP +G+K+ AF+
Sbjct:  205 VKPLQIIWSKFPHWSAKNTIHIDDLSRNFALNPGSGLKIHAFK 247
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BLAST of mRNA_Ecto-sp9_F_contig10996.862.1 vs.
Match: HAD (subfamily IIID h n=1 Tax=Cantharellus anzutake TaxID=1750568 RepID=UPI0019035F10)

HSP 1 Score: 72.4 bits (176), Expect = 1.300e-13
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:   13 VKPLKIIWDKHPRWHASNTLHVDDLSRNFALNPKNGVKVKAF 138
            VK LKIIW K P+W ASNT+H+DDLSRNFALNP +G+K+ AF
Sbjct:  280 VKALKIIWTKFPQWSASNTIHIDDLSRNFALNPASGLKISAF 321
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BLAST of mRNA_Ecto-sp9_F_contig10996.862.1 vs.
Match: FCP1 (homology domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1B6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.080e-13
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:   13 VKPLKIIWDKHPR-WHASNTLHVDDLSRNFALNPKNGVKVKAFRRKSDG 156
            VKPL+IIW+K P  W A NT+H+DDLSRNFALNP NG+KV AF RK  G
Sbjct:  364 VKPLQIIWNKFPSAWGAHNTVHLDDLSRNFALNPANGLKVTAFYRKKQG 412
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10996.862.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
FCP11.530e-2694.23homology domain-containing protein n=1 Tax=Ectocar... [more]
FCP14.830e-2694.23homology domain-containing protein n=1 Tax=Ectocar... [more]
HAD-like1.250e-1466.67domain-containing protein n=1 Tax=Tribonema minus ... [more]
FCP11.480e-1469.77homology domain-containing protein n=1 Tax=Plasmod... [more]
Had3.520e-1465.96family iiid protein n=1 Tax=Cystoisospora suis Tax... [more]
Protein-serine/threonine3.850e-1463.83phosphatase n=1 Tax=Gracilariopsis chorda TaxID=44... [more]
Protein-serine/threonine4.660e-1470.45phosphatase n=1 Tax=Pelagomonas calceolata TaxID=3... [more]
FCP11.110e-1367.44homology domain-containing protein n=1 Tax=Botryob... [more]
HAD1.300e-1371.43subfamily IIID h n=1 Tax=Cantharellus anzutake Tax... [more]
FCP12.080e-1369.39homology domain-containing protein n=1 Tax=Pseudo-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10996contigEcto-sp9_F_contig10996:342..1454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue2.6e-21
Seed eggNOG ortholog2880.D7FKN5
KEGG koko:K17618
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG5190@1,KOG1605@2759
Ec32 ortholog descriptionHAD-like domain
Ec32 orthologEc-09_000890.1
EC3.1.3.16
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928331.353503-CDS-Ecto-sp9_F_contig10996:341..4541622928331.353503-CDS-Ecto-sp9_F_contig10996:341..454Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10996 342..454 +
1692277835.9877102-CDS-Ecto-sp9_F_contig10996:341..4541692277835.9877102-CDS-Ecto-sp9_F_contig10996:341..454Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10996 342..454 +
1622928331.3662682-CDS-Ecto-sp9_F_contig10996:1408..14541622928331.3662682-CDS-Ecto-sp9_F_contig10996:1408..1454Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10996 1409..1454 +
1692277835.9990215-CDS-Ecto-sp9_F_contig10996:1408..14541692277835.9990215-CDS-Ecto-sp9_F_contig10996:1408..1454Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10996 1409..1454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10996.862.1prot_Ecto-sp9_F_contig10996.862.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10996 342..1454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10996.862.1

>prot_Ecto-sp9_F_contig10996.862.1 ID=prot_Ecto-sp9_F_contig10996.862.1|Name=mRNA_Ecto-sp9_F_contig10996.862.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=53bp
HRKKVKPLKIIWDKHPRWHASNTLHVDDLSRNFALNPKNGVKVKAFRRKS
DGR
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mRNA from alignment at Ecto-sp9_F_contig10996:342..1454+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10996.862.1 ID=mRNA_Ecto-sp9_F_contig10996.862.1|Name=mRNA_Ecto-sp9_F_contig10996.862.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1113bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10996:342..1454+ (Ectocarpus species9 EcSCA_722f female)
CACCGAAAAAAGGTGAAACCGCTCAAGATTATCTGGGACAAGCACCCAAG
ATGGCACGCCTCCAACACCTTGCACGTCGACGACCTCTCCAGGAACTTCG
CGCTCAACCCAAAGTGAGCCAGCCAGCCAGCCAGCCGAGCCAATCAGGGC
CGACGTTTTTTTTTTCGTTCGGTCCAAGTACATTTCCTGTCTAGAATGCA
CCTTTCGGTGTGTGTTTTGGGTCACACAGAAGGAACTCTCCACGCTTCCT
CCTGCGAGTACAAGGTGGAAGTACTACACGGGGAGGGCATATCAAAGCGG
GCGCAATAGTAAATACATAAAGGGTGGGAATACGGGCGGGTTCAGAGCGG
AAGAAGAAGTAGAAGAGTGATCATGCCGCGGAAACGTGCTGGAAGGGGTC
GTGCTTCGTGTGCGCAGCAGACCCTCGCCGTGCATGTTTTTCTCTCACAA
TTGTTTCTTTTTTTCTTTTTTCACTGACGTTTTTTGTTGCTAGAATTGCG
GAAGAATCTTCTTAAGCATGAGGCGTGGATGCCCCCGCAAGCCGGTAGGG
CGGGTACACCCTCCCTGAGATTTTGTCCTCAAGAGGACAAGAGACCTGTG
GCGAACACGGCTTTCTTTCGCCTGAGGCTGTGGTCTTCGCCAACAGCAAC
TGTTACCCTAATGCTTGTTTATTTGTATTGCATGATGAAACCACTTCACT
TACCGTACTGTAGGTGGCATGACGTAAGATAGCACACCCCCTGGACCGAA
CTTGAAAGCTTGAGTACTCCACGGCCAATGGGATGCCAAAAGTGAATGCA
TCACCCACCGAAACGAAACAAAACGCGGCGGGCGTTTGAAGCATCTGACG
GGAAGAGTGTTGACGAAGTTATCATCACCACCACGATATTTTTCGAACGA
CTGCAGCAGCAGTGGAAGTGCTGTACATGCATGCATGCATGTGTATGTAT
GTGTGTATGTATGTATGTATGTATGTATGTACGTACGTAGGTGTACCGAT
ATTTGTGTTTTAGCTAAAACCCCTAACGCCTACACCTGTTTCGCGCTCGA
CCTGGCCGCAAACACAGGAACGGTGTTAAGGTCAAGGCGTTCCGGCGCAA
GAGCGACGGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10996:342..1454+

>mRNA_Ecto-sp9_F_contig10996.862.1 ID=mRNA_Ecto-sp9_F_contig10996.862.1|Name=mRNA_Ecto-sp9_F_contig10996.862.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10996:342..1454+ (Ectocarpus species9 EcSCA_722f female)
CACCGAAAAAAGGTGAAACCGCTCAAGATTATCTGGGACAAGCACCCAAG
ATGGCACGCCTCCAACACCTTGCACGTCGACGACCTCTCCAGGAACTTCG
CGCTCAACCCAAACACCGAAAAAAGGTGAAACCGCTCAAGATTATCTGGG
ACAAGCACCCAAGATGGCACGCCTCCAACACCTTGCACGTCGACGACCTC
TCCAGGAACTTCGCGCTCAACCCAAAGAACGGTGTTAAGGTCAAGGCGTT
CCGGCGCAAGAGCGACGGGAGGGAACGGTGTTAAGGTCAAGGCGTTCCGG
CGCAAGAGCGACGGGAGG
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