mRNA_Ecto-sp9_F_contig10984.854.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10984.854.1
Unique NamemRNA_Ecto-sp9_F_contig10984.854.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10984.854.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT2_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 2.300e-82
Identity = 301/346 (86.99%), Postives = 303/346 (87.57%), Query Frame = 1 
Query:    1 MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYPHYDSPPAASADDRAAVAGGDDYGSVSSGGRSAFSPAVSDYAGVFEAGFDPAQVRASMSKEVVEVGQAGAPAAAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFLFDMEGLKDTTLEDQLEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPVEVKGRNG-GASCRGVVPQQQEGTTERTAAGRGLSPAXXXXXXAAREVSYAGFKGAALLRTPRVIAPRGTRCVTGGMYRLRLSTSC 1035
            MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYP YDSPPA                 VSSGGRSAFSPAVSDYAGVFEAGFDPAQVRASMSKEVVEVGQAGAPAAAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   FDMEGLK+TT       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   EV+GRN  GA CRGVVPQQQEGTT RTAAGRGLSPA      AA EVS AGFKGAALLRTPRVIAPRGTRCVTGGMYRLRLSTSC
Sbjct:    1 MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYPQYDSPPAXXXXXXXXXXXXXXXXXVSSGGRSAFSPAVSDYAGVFEAGFDPAQVRASMSKEVVEVGQAGAPAAAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXFDMEGLKETTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVEGRNNAGAPCRGVVPQQQEGTTARTAAGRGLSPAEAAAGGAACEVSCAGFKGAALLRTPRVIAPRGTRCVTGGMYRLRLSTSC 345
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BLAST of mRNA_Ecto-sp9_F_contig10984.854.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ3_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 2.920e-35
Identity = 75/94 (79.79%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:    1 MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYPHYDSPPAASADDRAAVAGGDDYGSVSSGGRSAFSPAVSDYAGVFEAGFDPAQ 282
            MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYPHYDSP                   VSSGGRSAFSPAVSDYAGVFEAGFDPAQ
Sbjct:    1 MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYPHYDSPXXXXXXXXXXXXXXXXXXXVSSGGRSAFSPAVSDYAGVFEAGFDPAQ 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10984.854.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.300e-8286.99protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.920e-3579.79protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10984contigEcto-sp9_F_contig10984:1674..2713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_002120.1
Exons1
Model size1040
Cds size1038
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928330.638725-UTR-Ecto-sp9_F_contig10984:1673..16751622928330.638725-UTR-Ecto-sp9_F_contig10984:1673..1675Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10984 1674..1675 -
1692277835.6592865-UTR-Ecto-sp9_F_contig10984:1673..16751692277835.6592865-UTR-Ecto-sp9_F_contig10984:1673..1675Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10984 1674..1675 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928330.7081616-CDS-Ecto-sp9_F_contig10984:1675..27131622928330.7081616-CDS-Ecto-sp9_F_contig10984:1675..2713Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10984 1676..2713 -
1692277835.6700668-CDS-Ecto-sp9_F_contig10984:1675..27131692277835.6700668-CDS-Ecto-sp9_F_contig10984:1675..2713Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10984 1676..2713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10984.854.1prot_Ecto-sp9_F_contig10984.854.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10984 1676..2713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10984.854.1

>prot_Ecto-sp9_F_contig10984.854.1 ID=prot_Ecto-sp9_F_contig10984.854.1|Name=mRNA_Ecto-sp9_F_contig10984.854.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=346bp
MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYPHYDSPPAA
SADDRAAVAGGDDYGSVSSGGRSAFSPAVSDYAGVFEAGFDPAQVRASMS
KEVVEVGQAGAPAAAMAAEEAAALVVEERRAFAAGGGGARDCREWRDDDD
GDDGAGISRGQHAAACSSAAALAAGGGVAREEEDSLSCCEEEEDFLFDME
GLKDTTLEDQLEDNNNSNRRDSGGSSSMRAAAAAAAADYYGYSRGGGWGT
TMTAAAAAVPVEVKGRNGGASCRGVVPQQQEGTTERTAAGRGLSPAAAAG
GGAAREVSYAGFKGAALLRTPRVIAPRGTRCVTGGMYRLRLSTSC*
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mRNA from alignment at Ecto-sp9_F_contig10984:1674..2713-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10984.854.1 ID=mRNA_Ecto-sp9_F_contig10984.854.1|Name=mRNA_Ecto-sp9_F_contig10984.854.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1040bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10984:1674..2713- (Ectocarpus species9 EcSCA_722f female)
ATGTTCGCCCTGCGCTCCTCTCCCTCCTCCCTGGTGTGCGACATCCGCGA
CGGCTGGGCCGCCACGTCCACCGCCGTGCTCTCGGCCCCGCGCCCGCGGC
GCGCCTCCGTCCGGCTCATCTACCCACACTACGACTCGCCGCCGGCGGCG
TCGGCCGACGACCGAGCTGCTGTTGCCGGCGGAGATGACTACGGCAGCGT
CAGCAGCGGCGGGAGGAGCGCCTTCTCTCCGGCCGTCTCTGACTACGCGG
GCGTGTTCGAGGCTGGCTTCGACCCCGCCCAGGTGAGGGCTTCGATGTCT
AAGGAGGTGGTTGAGGTTGGACAAGCGGGGGCGCCTGCTGCGGCGATGGC
AGCAGAGGAGGCTGCTGCGCTGGTGGTCGAGGAACGTCGAGCATTCGCGG
CCGGCGGCGGCGGCGCGCGGGACTGCAGGGAGTGGCGAGACGACGACGAC
GGCGACGACGGGGCGGGAATCAGCCGCGGCCAGCACGCGGCGGCCTGCAG
CAGCGCCGCAGCACTGGCTGCCGGAGGTGGTGTTGCTCGCGAGGAAGAGG
ACTCCTTGTCCTGCTGCGAGGAGGAGGAAGACTTTCTGTTCGACATGGAA
GGGTTGAAGGACACCACGCTTGAGGACCAGCTGGAGGACAACAATAATAG
CAACCGCCGCGACAGCGGTGGCAGCAGCAGCATGCGTGCCGCCGCCGCCG
CGGCCGCCGCTGATTATTATGGGTACAGCAGGGGCGGGGGCTGGGGTACG
ACTATGACGGCGGCGGCGGCGGCGGTGCCTGTGGAGGTCAAAGGACGCAA
CGGCGGCGCCTCCTGCCGCGGTGTTGTCCCGCAGCAGCAGGAGGGAACAA
CGGAAAGAACCGCCGCCGGCCGCGGTCTATCTCCTGCCGCTGCTGCTGGG
GGGGGGGCGGCACGCGAGGTGTCTTACGCCGGTTTCAAGGGCGCCGCGCT
GCTGCGCACGCCACGGGTGATCGCTCCCCGGGGAACGCGGTGCGTGACCG
GGGGAATGTACAGACTGAGGCTCAGCACGTCGTGCTAAGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10984:1674..2713-

>mRNA_Ecto-sp9_F_contig10984.854.1 ID=mRNA_Ecto-sp9_F_contig10984.854.1|Name=mRNA_Ecto-sp9_F_contig10984.854.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2076bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10984:1674..2713- (Ectocarpus species9 EcSCA_722f female)
ATGTTCGCCCTGCGCTCCTCTCCCTCCTCCCTGGTGTGCGACATCCGCGA
CGGCTGGGCCGCCACGTCCACCGCCGTGCTCTCGGCCCCGCGCCCGCGGC
GCGCCTCCGTCCGGCTCATCTACCCACACTACGACTCGCCGCCGGCGGCG
TCGGCCGACGACCGAGCTGCTGTTGCCGGCGGAGATGACTACGGCAGCGT
CAGCAGCGGCGGGAGGAGCGCCTTCTCTCCGGCCGTCTCTGACTACGCGG
GCGTGTTCGAGGCTGGCTTCGACCCCGCCCAGGTGAGGGCTTCGATGTCT
AAGGAGGTGGTTGAGGTTGGACAAGCGGGGGCGCCTGCTGCGGCGATGGC
AGCAGAGGAGGCTGCTGCGCTGGTGGTCGAGGAACGTCGAGCATTCGCGG
CCGGCGGCGGCGGCGCGCGGGACTGCAGGGAGTGGCGAGACGACGACGAC
GGCGACGACGGGGCGGGAATCAGCCGCGGCCAGCACGCGGCGGCCTGCAG
CAGCGCCGCAGCACTGGCTGCCGGAGGTGGTGTTGCTCGCGAGGAAGAGG
ACTCCTTGTCCTGCTGCGAGGAGGAGGAAGACTTTCTGTTCGACATGGAA
GGGTTGAAGGACACCACGCTTGAGGACCAGCTGGAGGACAACAATAATAG
CAACCGCCGCGACAGCGGTGGCAGCAGCAGCATGCGTGCCGCCGCCGCCG
CGGCCGCCGCTGATTATTATGGGTACAGCAGGGGCGGGGGCTGGGGTACG
ACTATGACGGCGGCGGCGGCGGCGGTGCCTGTGGAGGTCAAAGGACGCAA
CGGCGGCGCCTCCTGCCGCGGTGTTGTCCCGCAGCAGCAGGAGGGAACAA
CGGAAAGAACCGCCGCCGGCCGCGGTCTATCTCCTGCCGCTGCTGCTGGG
GGGGGGGCGGCACGCGAGGTGTCTTACGCCGGTTTCAAGGGCGCCGCGCT
GCTGCGCACGCCACGGGTGATCGCTCCCCGGGGAACGCGGTGCGTGACCG
GGGGAATGTACAGACTGAGGCTCAGCACGTCGTGCTAAATGTTCGCCCTG
CGCTCCTCTCCCTCCTCCCTGGTGTGCGACATCCGCGACGGCTGGGCCGC
CACGTCCACCGCCGTGCTCTCGGCCCCGCGCCCGCGGCGCGCCTCCGTCC
GGCTCATCTACCCACACTACGACTCGCCGCCGGCGGCGTCGGCCGACGAC
CGAGCTGCTGTTGCCGGCGGAGATGACTACGGCAGCGTCAGCAGCGGCGG
GAGGAGCGCCTTCTCTCCGGCCGTCTCTGACTACGCGGGCGTGTTCGAGG
CTGGCTTCGACCCCGCCCAGGTGAGGGCTTCGATGTCTAAGGAGGTGGTT
GAGGTTGGACAAGCGGGGGCGCCTGCTGCGGCGATGGCAGCAGAGGAGGC
TGCTGCGCTGGTGGTCGAGGAACGTCGAGCATTCGCGGCCGGCGGCGGCG
GCGCGCGGGACTGCAGGGAGTGGCGAGACGACGACGACGGCGACGACGGG
GCGGGAATCAGCCGCGGCCAGCACGCGGCGGCCTGCAGCAGCGCCGCAGC
ACTGGCTGCCGGAGGTGGTGTTGCTCGCGAGGAAGAGGACTCCTTGTCCT
GCTGCGAGGAGGAGGAAGACTTTCTGTTCGACATGGAAGGGTTGAAGGAC
ACCACGCTTGAGGACCAGCTGGAGGACAACAATAATAGCAACCGCCGCGA
CAGCGGTGGCAGCAGCAGCATGCGTGCCGCCGCCGCCGCGGCCGCCGCTG
ATTATTATGGGTACAGCAGGGGCGGGGGCTGGGGTACGACTATGACGGCG
GCGGCGGCGGCGGTGCCTGTGGAGGTCAAAGGACGCAACGGCGGCGCCTC
CTGCCGCGGTGTTGTCCCGCAGCAGCAGGAGGGAACAACGGAAAGAACCG
CCGCCGGCCGCGGTCTATCTCCTGCCGCTGCTGCTGGGGGGGGGGCGGCA
CGCGAGGTGTCTTACGCCGGTTTCAAGGGCGCCGCGCTGCTGCGCACGCC
ACGGGTGATCGCTCCCCGGGGAACGCGGTGCGTGACCGGGGGAATGTACA
GACTGAGGCTCAGCACGTCGTGCTAA
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