mRNA_Ecto-sp9_F_contig10981.852.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig10981.852.1
Unique Name	mRNA_Ecto-sp9_F_contig10981.852.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

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BLAST of mRNA_Ecto-sp9_F_contig10981.852.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G719_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 2.220e-61
Identity = 117/139 (84.17%), Postives = 120/139 (86.33%), Query Frame = 1

Query:    1 LPRTEFVEVMKQLAAATFSRPASTAAIGESGGGG-DGRYDAEEVVFSELSDQHDKAEDGLLAGMVVEVLAALSAGLPRLEEAAVLSWKGLRAVYPRGYGASYSHVGGVLGGLRRQGASLLSSPVSLRFFLHLHRYGGTT 414
            LPRTEFVEVMKQLAAAT SRPA             D  YDAE+ VFSELS+QHDKAEDGLLAGMVVEVLAALSAGLPR EEAAVLSWKGLRAVYPRGYGA YSHVGGV+GGLRRQGASLLSSPVSLRFFLHLHRYGGTT
Sbjct: 1451 LPRTEFVEVMKQLAAATSSRPAXXXXXXXXXXXXXDDLYDAEDAVFSELSEQHDKAEDGLLAGMVVEVLAALSAGLPRSEEAAVLSWKGLRAVYPRGYGAGYSHVGGVVGGLRRQGASLLSSPVSLRFFLHLHRYGGTT 1589

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10981.852.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G721_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 8.080e-61
Identity = 117/139 (84.17%), Postives = 120/139 (86.33%), Query Frame = 1

Query:    1 LPRTEFVEVMKQLAAATFSRPASTAAIGESGGGG-DGRYDAEEVVFSELSDQHDKAEDGLLAGMVVEVLAALSAGLPRLEEAAVLSWKGLRAVYPRGYGASYSHVGGVLGGLRRQGASLLSSPVSLRFFLHLHRYGGTT 414
            LPRTEFVEVMKQLAAAT SRPAS            D  YDAE+VVFSELS+QHDKAEDGLLAGMVVEVLAALSAGLPR EEAAVLSWKGLRAVYPRGYGA YS VGGV+GGLRRQGASLLSSPVSLRFFLHLHRY GTT
Sbjct:  642 LPRTEFVEVMKQLAAATSSRPASXXXXXXXXXXXXDDLYDAEDVVFSELSEQHDKAEDGLLAGMVVEVLAALSAGLPRSEEAAVLSWKGLRAVYPRGYGAGYSRVGGVVGGLRRQGASLLSSPVSLRFFLHLHRYSGTT 780

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10981.852.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6E0_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 4.230e-52
Identity = 100/122 (81.97%), Postives = 106/122 (86.89%), Query Frame = 1

Query:    1 LPRTEFVEVMKQLAAATFSRPASTAAIGESGGGGDGRYDAEEVVFSELSDQHDKAEDGLLAGMVVEVLAALSAGLPRLEEAAVLSWKGLRAVYPRGYGASYSHVGGVLGGLRRQGASLLSSP 366
            LPRTEFVEVMKQLA+AT SRPASTAAI  SGGGGD  YDAEE VFSELS+QHD+AEDGLLAGMVVEVLAALSAGLPR EE AVLSWKGLRAVYPRGYGA YSH+GGV+GGLR +    L  P
Sbjct: 1045 LPRTEFVEVMKQLASATSSRPASTAAIDTSGGGGDDLYDAEEAVFSELSEQHDRAEDGLLAGMVVEVLAALSAGLPRSEEGAVLSWKGLRAVYPRGYGAGYSHIGGVVGGLRSRLRGQLQFP 1166

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig10981.852.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig10981.852.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
Uncharacterized	2.220e-61	84.17	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	8.080e-61	84.17	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	4.230e-52	81.97	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig10981	contig	Ecto-sp9_F_contig10981:444..2621 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	199.5
Seed ortholog evalue	9.4e-49
Seed eggNOG ortholog	2880.D7G719
EggNOG OGs	2E5QG@1,2SCHA@2759
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-01_011370.1
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	4
Model size	416
Cds size	387
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig10981.852.1	prot_Ecto-sp9_F_contig10981.852.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig10981 444..2269 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928330.1949902-CDS-Ecto-sp9_F_contig10981:443..519	1622928330.1949902-CDS-Ecto-sp9_F_contig10981:443..519	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10981 444..519 -
1692277835.5468574-CDS-Ecto-sp9_F_contig10981:443..519	1692277835.5468574-CDS-Ecto-sp9_F_contig10981:443..519	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10981 444..519 -
1622928330.2142494-CDS-Ecto-sp9_F_contig10981:947..1101	1622928330.2142494-CDS-Ecto-sp9_F_contig10981:947..1101	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10981 948..1101 -
1692277835.5564446-CDS-Ecto-sp9_F_contig10981:947..1101	1692277835.5564446-CDS-Ecto-sp9_F_contig10981:947..1101	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10981 948..1101 -
1622928330.2260551-CDS-Ecto-sp9_F_contig10981:2112..2269	1622928330.2260551-CDS-Ecto-sp9_F_contig10981:2112..2269	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10981 2113..2269 -
1692277835.5644038-CDS-Ecto-sp9_F_contig10981:2112..2269	1692277835.5644038-CDS-Ecto-sp9_F_contig10981:2112..2269	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10981 2113..2269 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928330.2398076-UTR-Ecto-sp9_F_contig10981:2269..2272	1622928330.2398076-UTR-Ecto-sp9_F_contig10981:2269..2272	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig10981 2270..2272 -
1692277835.5721228-UTR-Ecto-sp9_F_contig10981:2269..2272	1692277835.5721228-UTR-Ecto-sp9_F_contig10981:2269..2272	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig10981 2270..2272 -
1622928330.251258-UTR-Ecto-sp9_F_contig10981:2597..2621	1622928330.251258-UTR-Ecto-sp9_F_contig10981:2597..2621	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig10981 2598..2621 -
1692277835.5799527-UTR-Ecto-sp9_F_contig10981:2597..2621	1692277835.5799527-UTR-Ecto-sp9_F_contig10981:2597..2621	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig10981 2598..2621 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig10981:444..2621-
coding sequence from alignment at Ecto-sp9_F_contig10981:444..2621-

protein sequence of mRNA_Ecto-sp9_F_contig10981.852.1

>prot_Ecto-sp9_F_contig10981.852.1 ID=prot_Ecto-sp9_F_contig10981.852.1|Name=mRNA_Ecto-sp9_F_contig10981.852.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=129bp
MKQLAAATFSRPASTAAIGESGGGGDGRYDAEEVVFSELSDQHDKAEDGL
LAGMVVEVLAALSAGLPRLEEAAVLSWKGLRAVYPRGYGASYSHVGGVLG
GLRRQGASLLSSPVSLRFFLHLHRYGGTT

mRNA from alignment at Ecto-sp9_F_contig10981:444..2621-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig10981.852.1 ID=mRNA_Ecto-sp9_F_contig10981.852.1|Name=mRNA_Ecto-sp9_F_contig10981.852.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2178bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10981:444..2621- (Ectocarpus species9 EcSCA_722f female)
CTCCCCCGGACGGAGTTTGTGGAGGTGAGAGGCAGCAACGGCATTGGGGG
TGGGATATCGTGGGGGGGGGGTTGTTGTGCATGCCTCAGTTGTTAGTTAG
ACGATGGACCAGGAAAAGGTTGTCGTTTGTGTCAGTGGAGTATTGTGCGC
CATGGCTATGTACCAGAAGAATCTGCTCGTGGAAAAATGAAAAACTCCTG
TCGAGACGACTAGAAACTGTTCTGTAACGCACCAAAATACATCCCATCCA
ATTTCTACATCGGGTGCATTCGGTGGCTGGTGTAGAACGTTCGCGGGTGA
CTGTCGTTGCTGCCGCCACGCGCGGCCGCTTTCTCGAAACCTATTTTAGG
TCATGAAGCAGCTTGCCGCGGCCACCTTTTCCCGCCCGGCCTCGACCGCC
GCCATCGGCGAGAGCGGCGGCGGCGGTGATGGCCGTTACGATGCCGAGGA
GGTGGTTTTTTCGGAGCTGTCCGACCAGCACGACAAGGCGGAAGACGGGC
TCCTGGCAGGTGCGCTCCAAGAGTCCAACATCATGTCCCGCAGGGCTTGA
TTTGACCCTGTTGGTCTCTTGCCAGTAGATCCGCCACACAACATCAAGCA
GTACTTTGTAGTTTTGGTCTCAGTCACTATTATACTGTCTATGGCACATC
GTGAATGATTGGGTGCAACCTGCTTGTATGCTTTTCTGACGAAGGTTTTA
TAGTTGTGAATCGGCGAGGCTGGGTGGGGTACGCACGGGTGGGCCCAGCA
TTTTTTGTTTATATTCTCTCCTGTGGTTCCACGGCTGTCAACAGCAACCG
TTAAGGCGGTCATTCACGTTCACGCTCTCACGGTACCGGGTCAAGTCCTG
TAGAGTGCAGGTGCAGCACGACGAGGATTTTTCTGCCGATTTCAGCGCCG
TGGCGAGTCGAAAACCGCGATGAAGGACGAGGCTTTGTTGTCTTGTCTTC
TGGAGGGTTGGACACCGCACAGCACATCAGTGTTCGTGCCAGTGATGAGA
CGCGTGTTAAGGATCGATCGTGAAACAGGTGTTTGTTGCAAGCGTTCGTA
GGCTTCAGAACAACCGTGAGAGGCAAGACTGACTGTGCCCAGCCAATATT
TGGTTCGCCTCTTCGGCGAAAAGTTTTGCGGCAGTCTTTATTTTTTGCCA
GTTCGGTCGACGGCTTTTGCTCATGTAGGGAAAGCAACTGCGGCGATACT
CCCAAAACTGCCCGATCTTACTCTACCAACCTGCTTCCGGCCCTCATTCG
TTGGCTCGTCCAAATCGGAAATCTCCGCTTGTGTTGTTGGGAGATTTCGG
ATATTTCTGCTCATATTCTAGCCATAGCTTCTCGCCGGGGAACACGAAAC
GCCAACTCGTACCACCGCTTGTCACCCATCACACTGAACCACATCACACC
GAACCACGTCACACCGAACACACCGAACCAACGTTTGTCAGCATGCACAA
TCTGTGTAATGTACTTTCGATTTCAAACACGGGCTCCCTCGCCGCCGCCG
TCCCCGACACGGAATCGCAGGCATGGTGGTGGAGGTGCTGGCCGCGCTGT
CCGCGGGACTCCCGAGGTTGGAAGAGGCGGCCGTGCTGTCGTGGAAGGGG
CTGCGTGCGGTGTATCCCCGGGGTTACGGCGCCAGCTACTCGCACGTCGG
AGGGGTCCTTGGGGGCCTTCGAAGGTATCAAATCAACACTTGGAAGCGTA
TCGTTTTATTTTTTTGTTATTGGCGCAGTTTCAAAGGCGCGTGGAGCATG
AGAATGCCCAGCCTGGTCCTATTGTCTGTTTTTGGTTCATGACGAGGGTA
TTTGTTTGTTTGCCGCACGGCGGTCATGACGGATTCTGCTTCGGCATTCG
AGCGTGGCAGCGGCCGCGCTGAGCACCTAGTTCGGAGCCATGTCGGACGT
TCGCATGGGCTGAAACAGAGGCAGTCTTAAATAATCTTGTCTTAACCTTA
TGTTAACCCCTTGCTCTCTAGGCAACATGAGACGAGCACTAGGCACCTGA
CAGCTCGGGTTGAAGATTGATTCACATCGCCCATCCTAATTTATCCCTTG
CTACCCCTCCCGCTCGCCGCCTTGTTTGTTTTTTTTCCTTTTTTTCTCGC
AGGCAGGGAGCGTCCCTGCTGTCGTCCCCTGTCTCTCTGCGATTCTTCCT
CCACCTCCACCGCTACGGCGGTACTACC

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10981:444..2621-

>mRNA_Ecto-sp9_F_contig10981.852.1 ID=mRNA_Ecto-sp9_F_contig10981.852.1|Name=mRNA_Ecto-sp9_F_contig10981.852.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10981:444..2621- (Ectocarpus species9 EcSCA_722f female)
ATGAAGCAGCTTGCCGCGGCCACCTTTTCCCGCCCGGCCTCGACCGCCGC
CATCGGCGAGAGCGGCGGCGGCGGTGATGGCCGTTACGATGCCGAGGAGG
TGGTTTTTTCGGAGCTGTCCGACCAGCACGACAAGGCGGAAGACGGGCTC
CTGGCAGATGAAGCAGCTTGCCGCGGCCACCTTTTCCCGCCCGGCCTCGA
CCGCCGCCATCGGCGAGAGCGGCGGCGGCGGTGATGGCCGTTACGATGCC
GAGGAGGTGGTTTTTTCGGAGCTGTCCGACCAGCACGACAAGGCGGAAGA
CGGGCTCCTGGCAGGCATGGTGGTGGAGGTGCTGGCCGCGCTGTCCGCGG
GACTCCCGAGGTTGGAAGAGGCGGCCGTGCTGTCGTGGAAGGGGCTGCGT
GCGGTGTATCCCCGGGGTTACGGCGCCAGCTACTCGCACGTCGGAGGGGT
CCTTGGGGGCCTTCGAAGGCATGGTGGTGGAGGTGCTGGCCGCGCTGTCC
GCGGGACTCCCGAGGTTGGAAGAGGCGGCCGTGCTGTCGTGGAAGGGGCT
GCGTGCGGTGTATCCCCGGGGTTACGGCGCCAGCTACTCGCACGTCGGAG
GGGTCCTTGGGGGCCTTCGAAGGCAGGGAGCGTCCCTGCTGTCGTCCCCT
GTCTCTCTGCGATTCTTCCTCCACCTCCACCGCTACGGCGGTACTACCGC
AGGGAGCGTCCCTGCTGTCGTCCCCTGTCTCTCTGCGATTCTTCCTCCAC
CTCCACCGCTACGGCGGTACTACC