mRNA_Ecto-sp9_F_contig1098.851.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1098.851.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE8_ECTSI) HSP 1 Score: 1228 bits (3178), Expect = 0.000e+0 Identity = 793/865 (91.68%), Postives = 799/865 (92.37%), Query Frame = 3
Query: 396 MEERVLPPEIRLKIVFAQANAVEEEEERLEADVKRLDGLVRTLALYGILERNSMDSTTSDKLTPDREQELGKMLVAAVQLELFRMLDDICEAGDVENELFDDLCADTIQDGRRSGFIFMTVELLLSPGSGYKRLLQLRKDQILEEIADVAGLRSLGGHDCQRSSSESSARGSPSHEPRKRVAAMDSDCGSPGSAAGGPGLQIAGGNRSASANLDEKSPSXXXXXXXXXXXXXXENGHRRTQTQRVRDLLSSIDGLVQESEEALTGMPSLAPNGPNENGAXXXXXXXXXXXRGSAPSRSVRGFKRQSTGAVDSRSGPSSRLSLRTPPPLDGEGDGSSHSDGAFFPNERDWRGSRFGSATTXXXXXXXXXXXXXXXXXXXXXXXXXPASADMLLAEVDWLIAGTNAALGVGNTKHTLEETPDKRGASPKTGGVSESPEAALSGREGGEGVGGDLIGIDGLEXXXXXXXXXXXXXXXXXXXDATRVAGEAPMEEEGEASLLDEEASPAALGVVQKALGEGGIGAEDSADEQRAGLPLPSSEAALTSSPSPETRVSGSSPDSAEKTALVSLPPTEAGSLEGDDDVAGXXXXXXXXXXXXXSEEEPAVGAGDSVEGGGDQGEQPADDATAKSSSDGEPAADGAPADVSDHVRTGQEEEEEE-KSEKPALDAVVEPSVASGVWQEGEQDGGVVLGAGIERGSLDPSQEEVGDIGRGEPAVPEADEEGAMPSEAAGARQQGGATVTLSSTSAAGTSSGSGADDSTGGLNESAAETEFSREMGRGSAGGGPSPLVVEAEVE--AVSAGGDTQSAVISDHGPENGXXXXXXXXXXKGPLGSS-SEQGXXXSVVVANGPGAEEEAQVPVFEEIEL 2978
MEERVLPPEIRLKIVFAQANAVEEEEERLEADVKRLDGLVRTLALYGILER+SMDSTTSDKLTPDRE+ELGKMLVAAVQLELFRMLDDICEAGDVENELFDDLCADTIQDGRRSGFIFMTVELLLSPGSGYKRLLQLRKDQILEEIADVAGLR+LGGHDCQRSSSESSARGSPSH RKRVAAMDSDCGSPGSAAGGPGLQIAGGNRSASANLDEKSPSXXXXXXXXXXXXXXENGHRRTQTQRVRDLLSSIDGLVQESEEALTGMPSLAPNG NENGA XXXX RGSAPSRSVRGFKRQSTGAVDSRSGPSSRLSLRTPPPLDGEGDGSSHSD AFFPNERDWRGSRFGSATTXXXXXXXXXXXXXXXXXXXXXXXXXPASADMLLAEVDWLIAGTNAALGVGNTKHTLEETPDKRGASPKTGGVSE PEA LSG EGGEGVGGDLIGIDGLEXXXXXXXXXXXXXXXXXXX A MEEEG+ASL DEE SPAALGVVQKALGEGGI AEDSADEQRAG PLPSSEA LTSSPSPE RVSGSSPDSAEKTAL+SLPPTE GSLEG DD AG XXXXXXXXSEEEPAVGAG SVEGGGDQGEQ ADD TAKSSSDGEPAADGAP DVSDHVRTGQEEE KSEKPALD VVEPSVASGV QEGEQDGGVVLGA +ERGSLDPSQEEV DIGRGEPAVPEADEEGAMPSEAAG RQQGGATVTLSSTSAAGTSSGSGADDSTGGL E AETEFSREMGRGSAGGGPSPLVVEAE AVSAG T S VISDHGPEN XXXXXXXXXXKGPLGSS SEQG SVVVANGPGAEEEAQVPVFEEIEL
Sbjct: 1 MEERVLPPEIRLKIVFAQANAVEEEEERLEADVKRLDGLVRTLALYGILERDSMDSTTSDKLTPDRERELGKMLVAAVQLELFRMLDDICEAGDVENELFDDLCADTIQDGRRSGFIFMTVELLLSPGSGYKRLLQLRKDQILEEIADVAGLRALGGHDCQRSSSESSARGSPSHGLRKRVAAMDSDCGSPGSAAGGPGLQIAGGNRSASANLDEKSPSXXXXXXXXXXXXXXENGHRRTQTQRVRDLLSSIDGLVQESEEALTGMPSLAPNGANENGAAAXXXXAG---RGSAPSRSVRGFKRQSTGAVDSRSGPSSRLSLRTPPPLDGEGDGSSHSDRAFFPNERDWRGSRFGSATTXXXXXXXXXXXXXXXXXXXXXXXXXPASADMLLAEVDWLIAGTNAALGVGNTKHTLEETPDKRGASPKTGGVSEPPEATLSGGEGGEGVGGDLIGIDGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXARMEEEGDASLPDEETSPAALGVVQKALGEGGIDAEDSADEQRAGSPLPSSEAVLTSSPSPEARVSGSSPDSAEKTALISLPPTEEGSLEGGDDGAGVVPDPXXXXXXXXSEEEPAVGAGGSVEGGGDQGEQAADDVTAKSSSDGEPAADGAPGDVSDHVRTGQEEEXXXXKSEKPALDVVVEPSVASGVRQEGEQDGGVVLGAVMERGSLDPSQEEVSDIGRGEPAVPEADEEGAMPSEAAGVRQQGGATVTLSSTSAAGTSSGSGADDSTGGLKEPTAETEFSREMGRGSAGGGPSPLVVEAEAXXXAVSAGVGT-SVVISDHGPENXXXXXXXXXXXKGPLGSSTSEQGGGGSVVVANGPGAEEEAQVPVFEEIEL 861
BLAST of mRNA_Ecto-sp9_F_contig1098.851.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGE6_9STRA) HSP 1 Score: 102 bits (254), Expect = 6.610e-19 Identity = 60/165 (36.36%), Postives = 90/165 (54.55%), Query Frame = 3
Query: 375 ERISLNAMEERVLPPEIRLKIVFAQANAVEEEEERLEADVKRLDGLVRTLALYGILERNSMDSTTSDKLTPDREQELGKMLVAAVQLELFRMLDDICEAGDVENELFDDLCADTIQDGRRSGFIFMTVELLLSPGSGYKRLLQLRKDQILEEIADVAGLRSLGGH 869
E + LN EER+LP E+R+ ++ A + ++A V RL+GLVR LAL G++ + +S L R + L K+LV + +LELF MLD++ GDV+N LF+ LC +Q GF +TV +LL P + + LLQ R + E + G + H
Sbjct: 35 ELMLLNNEEERLLPTEVRIALLIATETLQDGARTAMQARVLRLEGLVRVLALCGVVGGARVGRRSSVALARPRVRYLSKLLVTSAKLELFNMLDEVVRGGDVDNPLFNTLCQQEVQTHALQGFSSITVPVLLRPDNIFMALLQRRLFDVFEGVKRAGGAQLAAAH 199 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1098.851.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1098.851.1 >prot_Ecto-sp9_F_contig1098.851.1 ID=prot_Ecto-sp9_F_contig1098.851.1|Name=mRNA_Ecto-sp9_F_contig1098.851.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=948bp MFSRVRTPAAPPPGQGDQDGGSTSSNQGGGGGGWMSNIFGRVMVKVEEAIback to top mRNA from alignment at Ecto-sp9_F_contig1098:8305..16353+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1098.851.1 ID=mRNA_Ecto-sp9_F_contig1098.851.1|Name=mRNA_Ecto-sp9_F_contig1098.851.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=8049bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1098:8305..16353+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1098:8305..16353+ >mRNA_Ecto-sp9_F_contig1098.851.1 ID=mRNA_Ecto-sp9_F_contig1098.851.1|Name=mRNA_Ecto-sp9_F_contig1098.851.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=5688bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1098:8305..16353+ (Ectocarpus species9 EcSCA_722f female)back to top |