mRNA_Ecto-sp9_F_contig1097.846.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1097.846.1 vs.
Match: Anamorsin (homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUN0_ECTSI) HSP 1 Score: 524 bits (1350), Expect = 8.740e-183 Identity = 300/309 (97.09%), Postives = 303/309 (98.06%), Query Frame = 1
Query: 4 PPLSLAPAPAGSKALVVCRRGSEEASAAQQWASRSRSDGATVSVCPPGHLESHARANAGAYDTIVVEEAGEGAVLGQVVKLLKAGGNVNVAASSQGGEADAAAALKRALTFAGFLNVAANPEDPGVLSGERAAWETGASAPVRLSFGASKNGSRNGTNGNGPAAXXXXXXXNKTWKLALDXXXXXXXXXXXXXLIDEDALLESSAPVKRASETAGDGCATKRRACKDCSCGRAEMEMSGGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPAFEKGQEKTIMLLDLDSQQDD 930
PPLS APAPAGSKALVVCRR SEEAS+AQQWASRSRSDG +VSVCPPGHLESHARANAGAYDTIVVEEAGEGAVLGQVVKLLKAGGN+NVAASSQGGEA AAAALKRALTFAGFLNVAANPEDP VLSGERAAWETGASAPVRLSFGASKN SRNGTNGNGPAAXXXXXXXNKTWKLALDXXXXXXXXXXXXXLIDEDALLESSAPVKRASETAGDGCATKRRACKDCSCGRAEMEMSGGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPAFEKGQEKTIMLLDLDSQQDD
Sbjct: 6 PPLSFAPAPAGSKALVVCRRDSEEASSAQQWASRSRSDGTSVSVCPPGHLESHARANAGAYDTIVVEEAGEGAVLGQVVKLLKAGGNINVAASSQGGEA-AAAALKRALTFAGFLNVAANPEDPRVLSGERAAWETGASAPVRLSFGASKNDSRNGTNGNGPAAXXXXXXXNKTWKLALDXXXXXXXXXXXXXLIDEDALLESSAPVKRASETAGDGCATKRRACKDCSCGRAEMEMSGGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPAFEKGQEKTIMLLDLDSQQDD 313
BLAST of mRNA_Ecto-sp9_F_contig1097.846.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK2_9PHAE) HSP 1 Score: 151 bits (381), Expect = 1.440e-39 Identity = 111/139 (79.86%), Postives = 114/139 (82.01%), Query Frame = 1
Query: 226 LGQVVKLLKAGGNVNVAASSQGGEADAAAALKRALTFAGFLNVAANPEDPGVLSGERAAWETGASAPVRLSFGASKNGSRNGTNGNGPAAXXXXXXXNKTWKLALDXXXXXXXXXXXXXLIDEDALLESSAPVKRASET 642
+ +VVKLLKAGGNVNVAAS +GGE AAAALKRALTFAGF DP VLS ERAAWETGASAPVRLSFGASKNGSRNGTNGNGP XXXXXXX XXXXXXXXXXXXXLIDEDALLESSAPVKRASET
Sbjct: 1 MAEVVKLLKAGGNVNVAASPEGGEVAAAAALKRALTFAGFXXXXXXXXDPRVLSAERAAWETGASAPVRLSFGASKNGSRNGTNGNGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIDEDALLESSAPVKRASET 139
BLAST of mRNA_Ecto-sp9_F_contig1097.846.1 vs.
Match: Anamorsin (homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCA2_9STRA) HSP 1 Score: 131 bits (330), Expect = 4.540e-31 Identity = 112/314 (35.67%), Postives = 156/314 (49.68%), Query Frame = 1
Query: 16 LAPAPAGSKALVVCRRGSEEASAAQQWASRSRSDGATVSVCPPGHLESHARANAGAYDTIVVEEAG---EGAVLGQVVKLLKAGGNVNVAASSQGGEADAAAALKRALTFAGFLNVAANPEDPGVLSGERAAWETGASAPVRLSFGASKNGSRNGTNGNGPAAXXXXXXXNKT---WKLALDXXXXXXXXXXXXXLIDEDALLE--SSAPVKRASETAGDG-CATKRRACKDCSCGRAEMEMSGGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPAFEKGQEKTIMLLDLDSQQDD 930
LAP AG KA+VV S + +W S + S + V P A A +++++E+ + A+LG+ + L +GG + V S G E+ + L +GF++ PE + + AWE GASA ++ A GNG + WK+AL+ L+DEDALLE P+KRA+ A G C+TK+RACK+CSCGRAE+E +G A P P D +SACGNC +GDAFRC GCP+LG PAF+KGQEK + L LD+Q D+
Sbjct: 11 LAPLTAGHKAIVVSE--SADGGKLSEWCSNNDS---SFVVSP------QAAAGVKNVNSVIIEDPLLLLDDALLGRALGALASGGRLLVLGS--GSES-----VSSKLVLSGFVDARVTPEG---VEAFKPAWEAGASAQLKFKPKA----------GNGAVSKPQQQQKAAVATAWKVALNDLAEDDFAESDGGLVDEDALLEVAGDVPLKRATPAADAGDCSTKKRACKNCSCGRAELEAAG--------APAPPPE------DGPGSSACGNCYRGDAFRCSGCPYLGLPAFDKGQEKVV-LSSLDTQMDE 278
BLAST of mRNA_Ecto-sp9_F_contig1097.846.1 vs.
Match: Anamorsin (homolog n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKP2_9STRA) HSP 1 Score: 127 bits (320), Expect = 1.580e-29 Identity = 88/218 (40.37%), Postives = 112/218 (51.38%), Query Frame = 1
Query: 283 SQGGEADAAAALKRALTFAGFLNVAANP---EDPGVLSGERAAWETGASAPVRLSFGASKNGSRNGTNGNGPAAXXXXXXXNKTWKLALDXXXXXXXXXXXXXLIDEDALLESSAPV-----KRASETAGDGCATKRRACKDCSCGRAEMEMS-GGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPAFEKGQEKTIMLLD 909
++GG+ + A +K L AGF++V P L + WE GA+A V L G +A TW+L LID D+LLE + + KRA G GC TK+RACK+CSCGRAE E GGV+ LPV+S +++ A S+CGNC KGDAFRCGGCPFLGKPAFE GQEK ++ LD
Sbjct: 94 AKGGKEETCAGMKMQLLLAGFVDVEVLPASASSSASLIAHKPQWEVGAAASVSLPVSLPXXXXXXXXXXTGQSAA--------TWRLTDVDGEGGEEGGAEGELIDPDSLLEDAEVMAGLAAKRAEREQGQGCETKKRACKNCSCGRAEQEEGRGGVA---------LPVMSEEELE-ASVSSCGNCYKGDAFRCGGCPFLGKPAFEPGQEKLVLKLD 293
BLAST of mRNA_Ecto-sp9_F_contig1097.846.1 vs.
Match: Anamorsin (homolog n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GTM7_9STRA) HSP 1 Score: 104 bits (260), Expect = 1.820e-21 Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 1
Query: 586 IDEDALLESSAPVKRASET-AGDGCATKRRACKDCSCGRAEMEMSGGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPAFEKGQEKTIMLLDLDSQQD 927
IDED+LL+++ V++A++ G KRRACK+C+CGRAE E++ G PVVS ++ + S+CGNC KGDAFRCGGCPFLGKPAF+ G EK + L+LDS D
Sbjct: 179 IDEDSLLDNTEEVRKAAKNDCGVSANGKRRACKNCTCGRAETEIASG------------PVVSDQELSQ-MVSSCGNCFKGDAFRCGGCPFLGKPAFKPGMEKVV--LNLDSSDD 278
BLAST of mRNA_Ecto-sp9_F_contig1097.846.1 vs.
Match: Anamorsin (homolog n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJB8_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 1.850e-19 Identity = 58/115 (50.43%), Postives = 75/115 (65.22%), Query Frame = 1
Query: 586 IDEDALLESSAPVKRASET-AGDGCATKRRACKDCSCGRAEMEMSGGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPAFEKGQEKTIMLLDLDSQQD 927
IDED+LL+ + V++A++ G KRRACK+C+CGRAE E + SN PVVS ++ + S+CGNC KGDAFRCG CPFLGKPAF+ G EK + L+LDS D
Sbjct: 179 IDEDSLLDDTEEVRKAAKNDCGVSANGKRRACKNCTCGRAETENA---SN---------PVVSDQELSQ-MVSSCGNCFKGDAFRCGACPFLGKPAFKPGMEKVV--LNLDSSDD 278
BLAST of mRNA_Ecto-sp9_F_contig1097.846.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8D4_PYTOL) HSP 1 Score: 96.7 bits (239), Expect = 1.120e-18 Identity = 81/240 (33.75%), Postives = 116/240 (48.33%), Query Frame = 1
Query: 226 LGQVVKLLKAGGNVNVAASSQGGEADAAAALKRALTFAGFLNVAANPEDPGV--------LSGERAAWETGASAPVRLSFGASKNGSRNGTNGNGPAAXXXXXXXNKTWKLALDXXXXXXXXXXXXXLIDEDALLESSAPVKRAS----ETAGDGCATKRRACKDCSCGRAEMEMSGGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPAFEKGQEKTIMLLD 909
LG + +KAGG +++ + E+ + + L AGF+ A+ E G + ++ A+E+G+SA + L+ NGT P K WK+ D +IDED LL+ + V +A+ E DG KRRACK+C+CGR + E PVVS ++ + S+CGNC KGDAFRCG CPFLGKPAF+ G EK ++ LD
Sbjct: 74 LGVLTPHIKAGGTLHLYVADVDDESKNSVLM--GLMIAGFVEAEADAEISGYPGLPTARRFTSKKPAFESGSSAAIPLNS--------NGTKTAQPL---------KKWKVVSDDFDGEDDDD----VIDEDTLLDDTDEVLQAAKDDCEVGKDG---KRRACKNCTCGRKDEEDK--------------PVVSDAELTQ-MVSSCGNCFKGDAFRCGSCPFLGKPAFKPGMEKVMLNLD 272
BLAST of mRNA_Ecto-sp9_F_contig1097.846.1 vs.
Match: Anamorsin (homolog n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=DRE2_MONBE) HSP 1 Score: 94.7 bits (234), Expect = 5.640e-18 Identity = 70/198 (35.35%), Postives = 97/198 (48.99%), Query Frame = 1
Query: 313 ALKRALTFAGFLNVAANPEDPGVLS-GERAAWETGASAPVRLSFGASKNGSRNGTNGNGPAAXXXXXXXNKTWKLALDXXXXXXXXXXXXX-LID-EDALLESSAPVKRASETAGDGCATKRRACKDCSCGRAEMEMSGGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPAFEKGQEKTI 897
AL+ ALT GF+NV + + + + ++ +E GA+AP++LSF K + PAA + W +A D L+D ED L ++AP E G KRRACK+C+CGRA+ E T GPLP S+CGNC GDAFRC CP+LG PAF+ G++ T+
Sbjct: 103 ALRSALTMGGFVNVQVSTSEHALEAHADKPVYEVGAAAPLKLSFAKKKQ-----SGAAAPAAQVA-----EVWTIATDDFDDDDLLENDGDELLDAEDLALATTAPEGDDCEVGAGG---KRRACKNCTCGRADAEAEQAAKPT---LTGPLPA-----------SSCGNCYLGDAFRCASCPYLGMPAFKPGEKVTL 273
BLAST of mRNA_Ecto-sp9_F_contig1097.846.1 vs.
Match: Anamorsin (homolog n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0U0_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 6.560e-18 Identity = 74/180 (41.11%), Postives = 94/180 (52.22%), Query Frame = 1
Query: 388 GERAAWETGASAPVRLSFGASKNGSRNGTNGNGPAAXXXXXXXNKTWKLALDXXXXXXXXXXXXXLIDEDALLESSAPVKRASETAG----DGCATKRRACKDCSCGRAEMEMSGGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPAFEKGQEKTIMLLDLD 915
G + WE GASA V ++ G XXXXX TWK+A L+DED LL++ AP+ T G +G +RACK+C+CG AE E++GG GAA P PV V A +SACGNC KGDAFRC CPF GKP+F+ G+EK ++ L D
Sbjct: 110 GAKPDWEVGASAAVSVNLG-----------------XXXXXTSASTWKIAA-------LNEDGDDLVDEDDLLDA-APLPANISTGGGCGDEGSTKPKRACKNCTCGLAE-ELAGGGGE---GAAPPAPVDPV-----AKSSACGNCFKGDAFRCASCPFRGKPSFKPGEEKLVLDLGSD 255
BLAST of mRNA_Ecto-sp9_F_contig1097.846.1 vs.
Match: Anamorsin (homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQE7_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 8.200e-18 Identity = 107/313 (34.19%), Postives = 157/313 (50.16%), Query Frame = 1
Query: 31 AGSKALVVCRRGSEEASAAQQWASRSRSDGATVSVCPPGHLESHARANA---GAYDTIV-VEEAGEGAV--LGQVVKLLKAGGNVNVAASSQGGEADAAAALKRALTFAGFLNVAAN---------PEDPGV--LSGERAAWETGASAPVRLSFGASKNGSRNGTNGNGPAAXXXXXXXNKTWKLALDXXXXXXXXXXXXXLIDEDALLESSAPVKRASET-AGDGCATKRRACKDCSCGRAEMEMSGGVSNTNGGAAGPLPVVSVGDVDDALTSACGNCSKGDAFRCGGCPFLGKPAFEKGQEKTIMLLDLD 915
AG+ A+V + G+ +AA + R + A+V++ P S A+ A G++D +V EAG+ L + L+KAGG ++V ++ D +++ AL AGF+ A + PE S ++ ++ETGA+ + XXXXXXX K W + D XXXXXX+IDED LL+ + V +A+++ G K+RACK+C+CG + E PVVS ++ + S CGNC KGDAFRCG CPFLGKPAF+ G EK ++ LD D
Sbjct: 6 AGAVAIVTRQTGAAAEAAAVELR-RQQPKVASVALLPVAVGASVAQTAAVASGSFDAVVSFNEAGDDLTTELQALSPLVKAGGALHVFVANA--SEDTKSSILMALMIAGFVEAADSDAADAASFFPEAARARCFSSKKPSFETGAALSLSXXX----------------XXXXXXXXXXKKWTVLADEFDDDGDXXXXXXIIDEDTLLDDTDEVLKAAKSDCGPTVGGKKRACKNCTCGLKDEEDK--------------PVVSDTELSQ-MVSGCGNCFKGDAFRCGSCPFLGKPAFKPGMEKVLLNLDAD 284 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1097.846.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1097.846.1 >prot_Ecto-sp9_F_contig1097.846.1 ID=prot_Ecto-sp9_F_contig1097.846.1|Name=mRNA_Ecto-sp9_F_contig1097.846.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=311bp PPPLSLAPAPAGSKALVVCRRGSEEASAAQQWASRSRSDGATVSVCPPGHback to top mRNA from alignment at Ecto-sp9_F_contig1097:23380..26882- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1097.846.1 ID=mRNA_Ecto-sp9_F_contig1097.846.1|Name=mRNA_Ecto-sp9_F_contig1097.846.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3503bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1097:23380..26882- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1097:23380..26882- >mRNA_Ecto-sp9_F_contig1097.846.1 ID=mRNA_Ecto-sp9_F_contig1097.846.1|Name=mRNA_Ecto-sp9_F_contig1097.846.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1866bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1097:23380..26882- (Ectocarpus species9 EcSCA_722f female)back to top |