prot_Ecto-sp9_F_contig1097.845.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig1097.845.1
Unique Nameprot_Ecto-sp9_F_contig1097.845.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length208
Homology
BLAST of mRNA_Ecto-sp9_F_contig1097.845.1 vs.
Match: Ribosomal (protein S23, component of cytosolic 80S ribosome and 40S small subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM9_ECTSI)

HSP 1 Score: 384 bits (986), Expect = 1.850e-134
Identity = 204/207 (98.55%), Postives = 204/207 (98.55%), Query Frame = 0
Query:    1 MGVMQNKAPPNGSACFRTVRSVVGARALQCRGAAVSSSSGTNISEASNLQTFATGQLGLSSSMGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 207
            MGV QNKAPPNGSACFRTVRSVVGARALQ RGAAVSSS GTNISEASNLQTFATGQLGLSSSMGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS
Sbjct:    1 MGVQQNKAPPNGSACFRTVRSVVGARALQWRGAAVSSS-GTNISEASNLQTFATGQLGLSSSMGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 206          
BLAST of mRNA_Ecto-sp9_F_contig1097.845.1 vs.
Match: Putative (ribosomal protein S23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V8_9STRA)

HSP 1 Score: 273 bits (697), Expect = 2.420e-91
Identity = 136/145 (93.79%), Postives = 144/145 (99.31%), Query Frame = 0
Query:   63 MGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 207
            MGKGKP+GIRAGRKLRIHRRN+RWASKDYNK+HSVTAMKANPLGG+SMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+TDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGV++LALYK KKEKPRS
Sbjct:    1 MGKGKPSGIRAGRKLRIHRRNQRWASKDYNKAHSVTAMKANPLGGASMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSILALYKGKKEKPRS 145          
BLAST of mRNA_Ecto-sp9_F_contig1097.845.1 vs.
Match: 40s (ribosomal protein s23 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKK2_9STRA)

HSP 1 Score: 256 bits (655), Expect = 6.030e-85
Identity = 127/145 (87.59%), Postives = 138/145 (95.17%), Query Frame = 0
Query:   63 MGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 207
            MGKGKPAG  AGRKLR+HRRNE+WASK +NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLNF DENDEVLI+GFGR GHAVGDIPGVRFKV+KV+GV LLAL+KDKKEKPRS
Sbjct:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145          
BLAST of mRNA_Ecto-sp9_F_contig1097.845.1 vs.
Match: Uncharacterized (protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4BPE8_HYAAE)

HSP 1 Score: 253 bits (647), Expect = 9.950e-84
Identity = 128/145 (88.28%), Postives = 135/145 (93.10%), Query Frame = 0
Query:   63 MGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 207
            MGK KP+GIR  RKLR+HRR +RWA K YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRK  RVQLIKN KK+AAFVPRDGCLNF DENDEVLISGFGRRGHAVGDIPGVRFKVVKV+GV+LLALYK+KKEKPRS
Sbjct:    1 MGKHKPSGIRCARKLRVHRRTQRWAQKSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNSKKIAAFVPRDGCLNFVDENDEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145          
BLAST of mRNA_Ecto-sp9_F_contig1097.845.1 vs.
Match: 40S (ribosomal protein S23 n=31 Tax=Eukaryota TaxID=2759 RepID=A0A4W5LQ08_9TELE)

HSP 1 Score: 253 bits (645), Expect = 4.360e-83
Identity = 125/140 (89.29%), Postives = 132/140 (94.29%), Query Frame = 0
Query:   68 PAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 207
            PAGIR  RKLR+HRR +RW  K YNKSHS+TAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKC RVQLIKNGKK+AAFVPRDGCLN+ DENDEVLI+GFGRRGHAVGDIPGVRFKVVKVAGV+LLALYKDKKEKPRS
Sbjct:   29 PAGIRCARKLRVHRRTQRWNQKSYNKSHSITAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 168          
BLAST of mRNA_Ecto-sp9_F_contig1097.845.1 vs.
Match: RS23, (ribosomal protein 23 40S small ribosomal subunit n=15 Tax=Bacillariophyta TaxID=2836 RepID=B8C1Z7_THAPS)

HSP 1 Score: 249 bits (635), Expect = 6.240e-82
Identity = 123/142 (86.62%), Postives = 133/142 (93.66%), Query Frame = 0
Query:   66 GKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 207
            GKPAGIR GRKLRIHRRN+RW    Y K+HSVTAMKANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DENDEVL++GFGR GHAVGDIPGVRFK VKVAGV+LLALYK+KKEKPRS
Sbjct:    2 GKPAGIRTGRKLRIHRRNQRWHDLKYTKAHSVTAMKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLVAGFGRSGHAVGDIPGVRFKCVKVAGVSLLALYKEKKEKPRS 143          
BLAST of mRNA_Ecto-sp9_F_contig1097.845.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV04_9STRA)

HSP 1 Score: 249 bits (635), Expect = 1.000e-81
Identity = 125/147 (85.03%), Postives = 139/147 (94.56%), Query Frame = 0
Query:   61 SSMGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 207
            ++MGK KP+GIRAGRKLR+HRR +RWA+  Y KS+SVTA+KANP GG+ MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLNFTDENDEVLI+GFGRRGHAVGDIPGVRFKVVKVAGV+LLAL+K KKEKPR+
Sbjct:   11 ATMGKHKPSGIRAGRKLRVHRRAQRWANLKYVKSNSVTALKANPFGGACMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFTDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALFKGKKEKPRT 157          
BLAST of mRNA_Ecto-sp9_F_contig1097.845.1 vs.
Match: Uncharacterized (protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EIQ0_CAFRO)

HSP 1 Score: 245 bits (625), Expect = 2.220e-80
Identity = 123/145 (84.83%), Postives = 133/145 (91.72%), Query Frame = 0
Query:   63 MGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 207
            M +GKPAGI+A RKLR HRR +RWA K YNKSHS+TAMKANP GG+SMAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+AAFVPRDG LNF DENDEVLISGFGR GHAVGDIPGVRFKVVKVAGV+LLAL+K KKEKPRS
Sbjct:    1 MTRGKPAGIQAARKLRNHRREQRWAQKTYNKSHSITAMKANPFGGASMAKGIVLEKMGVEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGSLNFVDENDEVLISGFGRAGHAVGDIPGVRFKVVKVAGVSLLALFKGKKEKPRS 145          
BLAST of mRNA_Ecto-sp9_F_contig1097.845.1 vs.
Match: 40S (ribosomal protein S23 n=3 Tax=Placidida sp. TaxID=2810146 RepID=A0A8E8U732_9STRA)

HSP 1 Score: 245 bits (625), Expect = 2.220e-80
Identity = 119/145 (82.07%), Postives = 135/145 (93.10%), Query Frame = 0
Query:   63 MGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 207
            MGKG PAGIRA RKLR HRR++RWA KDY KSHS++ +KANP  G++MAKGIV+EK+GIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DENDEVL++GFGRRGHAVGDIPGVRFKVVKVAG +LLALYK+KKEKPR+
Sbjct:    1 MGKGLPAGIRAARKLRDHRRSQRWADKDYRKSHSLSTLKANPFAGATMAKGIVVEKLGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLVAGFGRRGHAVGDIPGVRFKVVKVAGASLLALYKEKKEKPRA 145          
BLAST of mRNA_Ecto-sp9_F_contig1097.845.1 vs.
Match: 40S (ribosomal protein S23 n=2 Tax=Placidida sp. TaxID=2810146 RepID=A0A8E8PJI4_9STRA)

HSP 1 Score: 245 bits (625), Expect = 2.220e-80
Identity = 123/145 (84.83%), Postives = 131/145 (90.34%), Query Frame = 0
Query:   63 MGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 207
            M KG PAG+RA RKLR HRR +RWA K YNKSHSV AMKANPLGGSSMAKGIV+EKIGIEAKQPNSAIRKCVRVQLIKN KK+ AFVP DGCLNF DENDEVL+SGFGR GHAVGDIPGVRFKVVKVAGV+LLAL+K KKEKPR+
Sbjct:    1 MSKGLPAGMRAARKLRTHRRKQRWAQKHYNKSHSVAAMKANPLGGSSMAKGIVVEKIGIEAKQPNSAIRKCVRVQLIKNSKKITAFVPNDGCLNFVDENDEVLVSGFGRSGHAVGDIPGVRFKVVKVAGVSLLALFKGKKEKPRA 145          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1097.845.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Ribosomal1.850e-13498.55protein S23, component of cytosolic 80S ribosome a... [more]
Putative2.420e-9193.79ribosomal protein S23 n=1 Tax=Tribonema minus TaxI... [more]
40s6.030e-8587.59ribosomal protein s23 n=2 Tax=Monodopsidaceae TaxI... [more]
Uncharacterized9.950e-8488.28protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M... [more]
40S4.360e-8389.29ribosomal protein S23 n=31 Tax=Eukaryota TaxID=275... [more]
RS23,6.240e-8286.62ribosomal protein 23 40S small ribosomal subunit n... [more]
Hypothetical1.000e-8185.03protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Uncharacterized2.220e-8084.83protein n=2 Tax=Cafeteria roenbergensis TaxID=3365... [more]
40S2.220e-8082.07ribosomal protein S23 n=3 Tax=Placidida sp. TaxID=... [more]
40S2.220e-8084.83ribosomal protein S23 n=2 Tax=Placidida sp. TaxID=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 89..207
e-value: 2.7E-62
score: 209.5
NoneNo IPR availablePANTHERPTHR11652:SF1440S RIBOSOMAL PROTEIN S23coord: 66..207
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 94..206
e-value: 1.0E-48
score: 163.7
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 66..207
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 124..131
IPR005680Ribosomal protein S23, eukaryotic/archaealTIGRFAMTIGR00982TIGR00982coord: 70..206
e-value: 5.5E-53
score: 176.4
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 85..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1097contigEcto-sp9_F_contig1097:14562..21798 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1097.845.1mRNA_Ecto-sp9_F_contig1097.845.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig1097 14562..22347 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig1097.845.1 ID=prot_Ecto-sp9_F_contig1097.845.1|Name=mRNA_Ecto-sp9_F_contig1097.845.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=208bp
MGVMQNKAPPNGSACFRTVRSVVGARALQCRGAAVSSSSGTNISEASNLQ
TFATGQLGLSSSMGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAM
KANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVP
RDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKD
KKEKPRS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006032Ribosomal_S12/S23
IPR005680Ribosomal_S23_euk/arc
IPR012340NA-bd_OB-fold