mRNA_Ecto-sp9_F_contig1097.845.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1097.845.1
Unique NamemRNA_Ecto-sp9_F_contig1097.845.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1097.845.1 vs.
Match: Ribosomal (protein S23, component of cytosolic 80S ribosome and 40S small subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM9_ECTSI)

HSP 1 Score: 383 bits (984), Expect = 4.120e-131
Identity = 204/207 (98.55%), Postives = 204/207 (98.55%), Query Frame = 1 
Query:    1 MGVMQNKAPPNGSACFRTVRSVVGARALQCRGAAVSSSSGTNISEASNLQTFATGQLGLSSSMGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 621
            MGV QNKAPPNGSACFRTVRSVVGARALQ RGAAVSSS GTNISEASNLQTFATGQLGLSSSMGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS
Sbjct:    1 MGVQQNKAPPNGSACFRTVRSVVGARALQWRGAAVSSS-GTNISEASNLQTFATGQLGLSSSMGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 206
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1097.845.1 vs.
Match: Putative (ribosomal protein S23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V8_9STRA)

HSP 1 Score: 272 bits (695), Expect = 3.310e-88
Identity = 136/145 (93.79%), Postives = 144/145 (99.31%), Query Frame = 1 
Query:  187 MGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 621
            MGKGKP+GIRAGRKLRIHRRN+RWASKDYNK+HSVTAMKANPLGG+SMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+TDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGV++LALYK KKEKPRS
Sbjct:    1 MGKGKPSGIRAGRKLRIHRRNQRWASKDYNKAHSVTAMKANPLGGASMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSILALYKGKKEKPRS 145
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BLAST of mRNA_Ecto-sp9_F_contig1097.845.1 vs.
Match: 40s (ribosomal protein s23 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKK2_9STRA)

HSP 1 Score: 256 bits (653), Expect = 7.400e-82
Identity = 127/145 (87.59%), Postives = 138/145 (95.17%), Query Frame = 1 
Query:  187 MGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 621
            MGKGKPAG  AGRKLR+HRRNE+WASK +NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLNF DENDEVLI+GFGR GHAVGDIPGVRFKV+KV+GV LLAL+KDKKEKPRS
Sbjct:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1097.845.1 vs.
Match: Uncharacterized (protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4BPE8_HYAAE)

HSP 1 Score: 253 bits (645), Expect = 1.200e-80
Identity = 128/145 (88.28%), Postives = 135/145 (93.10%), Query Frame = 1 
Query:  187 MGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 621
            MGK KP+GIR  RKLR+HRR +RWA K YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRK  RVQLIKN KK+AAFVPRDGCLNF DENDEVLISGFGRRGHAVGDIPGVRFKVVKV+GV+LLALYK+KKEKPRS
Sbjct:    1 MGKHKPSGIRCARKLRVHRRTQRWAQKSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNSKKIAAFVPRDGCLNFVDENDEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145
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BLAST of mRNA_Ecto-sp9_F_contig1097.845.1 vs.
Match: 40S (ribosomal protein S23 n=31 Tax=Eukaryota TaxID=2759 RepID=A0A4W5LQ08_9TELE)

HSP 1 Score: 252 bits (643), Expect = 5.210e-80
Identity = 125/140 (89.29%), Postives = 132/140 (94.29%), Query Frame = 1 
Query:  202 PAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 621
            PAGIR  RKLR+HRR +RW  K YNKSHS+TAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKC RVQLIKNGKK+AAFVPRDGCLN+ DENDEVLI+GFGRRGHAVGDIPGVRFKVVKVAGV+LLALYKDKKEKPRS
Sbjct:   29 PAGIRCARKLRVHRRTQRWNQKSYNKSHSITAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 168
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BLAST of mRNA_Ecto-sp9_F_contig1097.845.1 vs.
Match: RS23, (ribosomal protein 23 40S small ribosomal subunit n=15 Tax=Bacillariophyta TaxID=2836 RepID=B8C1Z7_THAPS)

HSP 1 Score: 248 bits (633), Expect = 7.250e-79
Identity = 123/142 (86.62%), Postives = 133/142 (93.66%), Query Frame = 1 
Query:  196 GKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 621
            GKPAGIR GRKLRIHRRN+RW    Y K+HSVTAMKANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DENDEVL++GFGR GHAVGDIPGVRFK VKVAGV+LLALYK+KKEKPRS
Sbjct:    2 GKPAGIRTGRKLRIHRRNQRWHDLKYTKAHSVTAMKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLVAGFGRSGHAVGDIPGVRFKCVKVAGVSLLALYKEKKEKPRS 143
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BLAST of mRNA_Ecto-sp9_F_contig1097.845.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV04_9STRA)

HSP 1 Score: 248 bits (633), Expect = 1.160e-78
Identity = 125/147 (85.03%), Postives = 139/147 (94.56%), Query Frame = 1 
Query:  181 SSMGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 621
            ++MGK KP+GIRAGRKLR+HRR +RWA+  Y KS+SVTA+KANP GG+ MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLNFTDENDEVLI+GFGRRGHAVGDIPGVRFKVVKVAGV+LLAL+K KKEKPR+
Sbjct:   11 ATMGKHKPSGIRAGRKLRVHRRAQRWANLKYVKSNSVTALKANPFGGACMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFTDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALFKGKKEKPRT 157
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BLAST of mRNA_Ecto-sp9_F_contig1097.845.1 vs.
Match: Uncharacterized (protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EIQ0_CAFRO)

HSP 1 Score: 244 bits (623), Expect = 2.510e-77
Identity = 123/145 (84.83%), Postives = 133/145 (91.72%), Query Frame = 1 
Query:  187 MGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 621
            M +GKPAGI+A RKLR HRR +RWA K YNKSHS+TAMKANP GG+SMAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+AAFVPRDG LNF DENDEVLISGFGR GHAVGDIPGVRFKVVKVAGV+LLAL+K KKEKPRS
Sbjct:    1 MTRGKPAGIQAARKLRNHRREQRWAQKTYNKSHSITAMKANPFGGASMAKGIVLEKMGVEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGSLNFVDENDEVLISGFGRAGHAVGDIPGVRFKVVKVAGVSLLALFKGKKEKPRS 145
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BLAST of mRNA_Ecto-sp9_F_contig1097.845.1 vs.
Match: 40S (ribosomal protein S23 n=3 Tax=Placidida sp. TaxID=2810146 RepID=A0A8E8U732_9STRA)

HSP 1 Score: 244 bits (623), Expect = 2.510e-77
Identity = 119/145 (82.07%), Postives = 135/145 (93.10%), Query Frame = 1 
Query:  187 MGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 621
            MGKG PAGIRA RKLR HRR++RWA KDY KSHS++ +KANP  G++MAKGIV+EK+GIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DENDEVL++GFGRRGHAVGDIPGVRFKVVKVAG +LLALYK+KKEKPR+
Sbjct:    1 MGKGLPAGIRAARKLRDHRRSQRWADKDYRKSHSLSTLKANPFAGATMAKGIVVEKLGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLVAGFGRRGHAVGDIPGVRFKVVKVAGASLLALYKEKKEKPRA 145
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1097.845.1 vs.
Match: 40S (ribosomal protein S23 n=2 Tax=Placidida sp. TaxID=2810146 RepID=A0A8E8PJI4_9STRA)

HSP 1 Score: 244 bits (623), Expect = 2.510e-77
Identity = 123/145 (84.83%), Postives = 131/145 (90.34%), Query Frame = 1 
Query:  187 MGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 621
            M KG PAG+RA RKLR HRR +RWA K YNKSHSV AMKANPLGGSSMAKGIV+EKIGIEAKQPNSAIRKCVRVQLIKN KK+ AFVP DGCLNF DENDEVL+SGFGR GHAVGDIPGVRFKVVKVAGV+LLAL+K KKEKPR+
Sbjct:    1 MSKGLPAGMRAARKLRTHRRKQRWAQKHYNKSHSVAAMKANPLGGSSMAKGIVVEKIGIEAKQPNSAIRKCVRVQLIKNSKKITAFVPNDGCLNFVDENDEVLVSGFGRSGHAVGDIPGVRFKVVKVAGVSLLALFKGKKEKPRA 145
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1097.845.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Ribosomal4.120e-13198.55protein S23, component of cytosolic 80S ribosome a... [more]
Putative3.310e-8893.79ribosomal protein S23 n=1 Tax=Tribonema minus TaxI... [more]
40s7.400e-8287.59ribosomal protein s23 n=2 Tax=Monodopsidaceae TaxI... [more]
Uncharacterized1.200e-8088.28protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M... [more]
40S5.210e-8089.29ribosomal protein S23 n=31 Tax=Eukaryota TaxID=275... [more]
RS23,7.250e-7986.62ribosomal protein 23 40S small ribosomal subunit n... [more]
Hypothetical1.160e-7885.03protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Uncharacterized2.510e-7784.83protein n=2 Tax=Cafeteria roenbergensis TaxID=3365... [more]
40S2.510e-7782.07ribosomal protein S23 n=3 Tax=Placidida sp. TaxID=... [more]
40S2.510e-7784.83ribosomal protein S23 n=2 Tax=Placidida sp. TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1097contigEcto-sp9_F_contig1097:14562..22347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score388.3
Seed ortholog evalue2.3e-105
Seed eggNOG ortholog2880.D7FUM9
Preferred nameRPS23
KEGG koko:K02973,ko:K03124
KEGG Pathwayko03010,ko03022,ko05169,ko05203,map03010,map03022,map05169,map05203
KEGG ModuleM00177
GOsGO:0000184,GO:0000462,GO:0000956,GO:0001666,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006450,GO:0006518,GO:0006605,GO:0006606,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009628,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017038,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0023051,GO:0023056,GO:0030490,GO:0030867,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034063,GO:0034248,GO:0034470,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0036293,GO:0036294,GO:0042175,GO:0042221,GO:0042254,GO:0042274,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045182,GO:0045184,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051252,GO:0051254,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070727,GO:0070887,GO:0070925,GO:0070972,GO:0071453,GO:0071456,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0080134,GO:0080135,GO:0090150,GO:0090304,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990145,GO:1990904,GO:2000112,GO:2000638,GO:2000640,GO:2001141
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0048@1,KOG1749@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog description40S ribosomal protein S23
Ec32 orthologEc-26_002100.1
Exons6
Model size1173
Cds size624
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928329.4310498-CDS-Ecto-sp9_F_contig1097:14561..146551622928329.4310498-CDS-Ecto-sp9_F_contig1097:14561..14655Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1097 14562..14655 +
1692277835.1694787-CDS-Ecto-sp9_F_contig1097:14561..146551692277835.1694787-CDS-Ecto-sp9_F_contig1097:14561..14655Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1097 14562..14655 +
1622928329.445322-CDS-Ecto-sp9_F_contig1097:17663..177541622928329.445322-CDS-Ecto-sp9_F_contig1097:17663..17754Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1097 17664..17754 +
1692277835.1810787-CDS-Ecto-sp9_F_contig1097:17663..177541692277835.1810787-CDS-Ecto-sp9_F_contig1097:17663..17754Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1097 17664..17754 +
1622928329.4650712-CDS-Ecto-sp9_F_contig1097:18510..185921622928329.4650712-CDS-Ecto-sp9_F_contig1097:18510..18592Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1097 18511..18592 +
1692277835.1891828-CDS-Ecto-sp9_F_contig1097:18510..185921692277835.1891828-CDS-Ecto-sp9_F_contig1097:18510..18592Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1097 18511..18592 +
1622928329.478149-CDS-Ecto-sp9_F_contig1097:20398..204871622928329.478149-CDS-Ecto-sp9_F_contig1097:20398..20487Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1097 20399..20487 +
1692277835.197546-CDS-Ecto-sp9_F_contig1097:20398..204871692277835.197546-CDS-Ecto-sp9_F_contig1097:20398..20487Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1097 20399..20487 +
1622928329.6099973-CDS-Ecto-sp9_F_contig1097:21029..211561622928329.6099973-CDS-Ecto-sp9_F_contig1097:21029..21156Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1097 21030..21156 +
1692277835.2062266-CDS-Ecto-sp9_F_contig1097:21029..211561692277835.2062266-CDS-Ecto-sp9_F_contig1097:21029..21156Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1097 21030..21156 +
1622928329.6221764-CDS-Ecto-sp9_F_contig1097:21657..217981622928329.6221764-CDS-Ecto-sp9_F_contig1097:21657..21798Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1097 21658..21798 +
1692277835.2152598-CDS-Ecto-sp9_F_contig1097:21657..217981692277835.2152598-CDS-Ecto-sp9_F_contig1097:21657..21798Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1097 21658..21798 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928329.6381905-UTR-Ecto-sp9_F_contig1097:21798..223471622928329.6381905-UTR-Ecto-sp9_F_contig1097:21798..22347Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1097 21799..22347 +
1692277835.224524-UTR-Ecto-sp9_F_contig1097:21798..223471692277835.224524-UTR-Ecto-sp9_F_contig1097:21798..22347Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1097 21799..22347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1097.845.1prot_Ecto-sp9_F_contig1097.845.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1097 14562..21798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1097.845.1

>prot_Ecto-sp9_F_contig1097.845.1 ID=prot_Ecto-sp9_F_contig1097.845.1|Name=mRNA_Ecto-sp9_F_contig1097.845.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=208bp
MGVMQNKAPPNGSACFRTVRSVVGARALQCRGAAVSSSSGTNISEASNLQ
TFATGQLGLSSSMGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAM
KANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVP
RDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKD
KKEKPRS*
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mRNA from alignment at Ecto-sp9_F_contig1097:14562..22347+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1097.845.1 ID=mRNA_Ecto-sp9_F_contig1097.845.1|Name=mRNA_Ecto-sp9_F_contig1097.845.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=7786bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1097:14562..22347+ (Ectocarpus species9 EcSCA_722f female)
ATGGGTGTTATGCAAAACAAGGCCCCGCCGAACGGGTCGGCGTGTTTCCG
CACAGTACGAAGCGTTGTTGGCGCGCGAGCTCTTCAATGTAGAGGTGAGG
CGACGAGCAGGAGCTTGGAGCTAGTCCTTGCTTCCCCCCTTACGTGCTGT
CGCGGACGTGTTGTGTCAGAGAATGATGGATGAACATGTGACGCTCATGT
TTCCGCTTCTGATATAGCTGCGGGGTTAGCGTCAAGTTTGCCCGCATCAT
GCCTATGTAGGTATTATATGTTGAATCGAGCGTGGTGGTATCTTGTGTTC
GATTTCCCCCTGTTGTGTTGCACCATGTGTGTTGCACCATGCATGTGCAA
CTTGTTTTTCGTCAGTTGCAGTGATATGACGTTATGTTGTCTGCCGCAAC
CCTGCCTGCCACACCATACTAGCCCCCCCTCAGCCCGTCCCACTTGCCGC
CCCCGGCCGTGCGGCTCGTGGCTAAGCACCATCAGAGCAGCACGAAAGCT
GACACTGTCTGAATTCAACCACGAGCGATCCCTATCCCTTTCAGCACCCC
AATCTTCCATCCTCGTACCCAGCCAGATGCCCCATTTCCCCCCCCACCCC
CCCCTAAAATGCAGCCAAGCCACCTACCACCGGTCTTGCCCCTCTGCGTG
TTTCGTAGCGCCCACCGTGTAAACTCCTCTACGTTACAGGTGTCGGTTTC
GCCTTTTTGACCTTGCCGCACCTGCTCCTAGCCCCCTTCTCACCATTTTC
TCTGCCGACCTCCCCCGAAAAACCTCAATCGCTCGCCCTGTTTCCTTCCT
CCCCACAAACCCGATTGCGTTTCGCCCCAGCGGGTGAAAACCCCGTCGCC
ACTTCGCTACAACAATCTGCTACTCTCTCATCTCTTGTCTTTCCTCATCA
CACCTTACCCCCGAGCTAGCAGCCCCGCCCGCCTAAACTTGGGTCAGCCT
ATGCCACATCCGTTCTTTGCTTCTTCTTCCCCCCTGTTTAGACCCTTAAA
AACAAGCTTTGAATTGCACGAGGCATCTCCTGCCCTACAGCAGGTGTTTC
CCGCATCCACTCTAATAGTACTATGTTTGCGGTCATGTCCCTCCCTTCAC
CGACAGTCTGAGCGTGCATCCCAATACCCAAAATGTCCCAAAATGACGCG
TCCTCTAGTTTGGTGCGTAAAGTCAGCGGGCAGGCGAAAAACGAATTTCC
GAAGTCCGCGAGAGCGGCAAGACGTCAGCCGGGGCGTACTGTATTTGCCG
CCTTGTTTGCGCTTGGATACCTGGGCAGAATAAAGGTTTGGGTGTTCGAG
GCACGTCCCATCTATCAACAACGCACGATGTGTATGAATAGCAGTGCGAG
GTCCTCTAGCATTTCACCTCGTAACCTGCTCGTGTTCGCGAGCGCTGACA
ACTCACGAGCCTGATCGATAACTCCTTGGTGTTCGATTTGTACGCCACAG
TACTGCCGCGTGCCTTGTGGTGTGTAAGTAGAAGAATAAGAATTAATGCC
TCTTTACCTGCGTTATCACCGTCTTTTTCTACCTTCACGTGTGGAACACG
AGTGAGTCTACATGTGGTTATTTTCCGTTAGAATAACCGTCTCGCTGCCC
CACCCAACCTGTGGTCTTTATGAAGTCCTTGGACCGAAATGGGCCAGACC
TGCTCGAGTGGTGAACATCGATGGGCAAGGCCTCGCCAGGAGAGTTTCTT
TGTGTGATGTCAATGATAGTTGCCCCGGCCGCGCTCAAGGAATACACCGC
ACCAGCACGAGCCTGAACAAACCCTCACCCGCTGCCGGCAATTCTCAGCA
GTAGTCGATCAACGGTCTGCCTCGCGACGTCCAGTGCGCCTTAGGAAGCA
CGAACCCATGAGCTGCGACCTCGAACCCGTCGTGAAACATCGTGAAAGGC
CGTCAGAGACTGCTGTTGGCATACACTTTATTGAGTTGCACGTACATACT
GTACACTGCGAATACCCGTGGCGCGTGCGTCCACGGGAGGGATACAACAA
TTTTTTGTCGCAGTTTGTCGCTGAAGTCTCCTATCAGCACGTGCGATGGT
TGACGAAACGTACGCATTTCCCGTATCCGTTATCGATCACAGCTGTGTGG
ACCCAATCGAAAGTCTGCAATCCGCTGGAAAATCTAAACCGCTTTACACG
AACGATGGGACGCGGTGACCCTCAGGATCGTCGGGCTAGCGTTGGGAAGG
AAGTTGGTCGCCACTTTTCGGCCTGTCAGCGACCAGCACTGAGTAGACGT
ATGCATGCAACCAAAGACTACCAAAGACTTGAAGAAAAACAAGTCCGGGG
GAACCTCGACAAGAGGGCTAGTGGTCGGTACAGCGCCATCGACCATAATT
GCAAAACGAGATGTATGTACTGTAACTCCCTCCGCTCATCCACTTTCAGC
GCCGGCGTAAAGCTCGGGTGCCACTGAAAGCTGCACGAGCGCACGTTGTG
CGTGGAGAACTATCCAGCGAAAGCAATGAACACAACGTTCGGATGTTCGG
ATGACTTTTCTCGTGCCTCGTCATCGCAAATGCACTGTGGGTAGTCTCGG
AAGCGGCGCTCTTACCACCTACCACGTGTAGACTACATGTACAGCGTACA
ACCACGCCAACCAAAAAAACAATCTGCATCGTACAACCAAGAGTGGAGAT
GGCCATTGTGTGAATGCTGTGCTGTGCTGCCATGCAGCGTTCTCGTAGTT
CTTCGGAGAGCGCCTTCTGGTGTGTGTCGGGGCAGAGCCAGAAACTAGCT
TACAGCGCGAAGGGGTAAACGGTACAGAGGATGATGCACACATGAACACG
CCGTGCACAACTACTGTAAATATGCATACAAAGAGCGATGGTCACCAGAA
ACCTTCATTACGTGTCCAGCACTATTGCCTTCATAGCAGATTCCCCCCAC
CAGCATTAGACTCCTTCCGCCCGTGACTATGCATGCATGTGTAATGTGTA
TGTCATTCCATCTCCTCGTCGGTCGTCGGGGCGGAGTGAGACCGAAAAAA
AAAGTGAAACGGTTGATCCCCCATCCCCTCGAGAAAGCCCCCAAACTACA
AGCCTCCCGCAATACATTGAAACCCCAATTTTTTTGTTGGTGTGTGGACG
AGGCGCAGCAGTCAGCAGCAGCAGCGGCACCAACATCTCCGAGGCCTCAA
ACCTTCAAACCTTTGCCACCGGGCAACTAGGTTTATCCTCAAGGTGAGAT
TTCTCTTTGCCTGAAGGTATGTTAGGTCGATGTGGCGAGGAACTAGAGAT
GGTGATCCTATTACGTGTGTTGGGGTAAGGAGAGTGCTGGAACAGCAGAT
CTCGTGGGGGTGCATGGCTGTCCTTGGGCGGGGGAGCGTAGGGGCAGGGT
GGCGATGTGTTGGGCGGTTTGTCTCAGAGATGCGATTTCCGAGCTTTCGT
GGTGGAGGTGTGGGAGACATCCTGTGTGAAACTGCTTGTGTACTGCTTCT
GCTGTGTCCACGGCGCCTCGCCCGCCGAGTTTGTGCGACTCCCTCCACTG
CCTGCTCCCCTCCTCTCGCTACATAGCAAAGCAACGTCAAGCCGTGTCTA
CACCATGTGCACCTTAGACAGCGCACCATTCTCCACCATGTTGGACTTAT
TCCCGTGTAAATGCTACATCTTATGGACGGTTCTATCGTTGCTACAAACG
ACTGCCTGATCTATCGGCCGCGGTTGACTCCAAACGCCTTTGCACTGCTG
TATTTCGCACAACCTTTGCTCAATTTGCCAATTCGACATCAAGGAGGCAA
GCAAAGGCGTGTGTGTGTGCCGCCGACCCTACTCCCTGCTGTTTCCCCAA
AAGCAATCCCGCCCTGGCGGCTATCTAACATATGTCGCCGTTTCTCTCTC
CCCCCCCTTGTCCCTCCACTGGTTTCTTGGTCTGACTACATCGTTGCTGC
TTTTGATCGGCGGGGGGGGGGGCGGTGGAAACGAACGAACAGCTTACAGC
ATGGGTAAGGGAAAGCCGGCGGGCATCCGCGCGGGGCGCAAGCTCCGCAT
CCACCGCCGTAACGAGCGGTGGGCGAGCAAGGTCAGTGGTGAATGTGTTT
TTTCTGCTACAGTGCATGCTTTCATCTCCGCCCTTGGCCAAAGGGCATTC
GTGTTTTGTGCGTAAGCTTTGATGGACAAAAGAGGGGCGAAAATCCGCAG
GTAGGTGTAACAACATCGTCGTGCCGACAGCAGTCAGGACATCAGGACGC
CTGCCTTACACTGCAGTTAGGGATTTCCTCTTTACGTAAGTTAAAATACT
GTGTCAGGTGTGCTTGCTACCACTGTCCGTCTGCTGTGTGCGTGCAAAAG
TGCGATCGATGCGATGCATTGCTTGCAAAAGACGGTGCTTCTGTTGTAGC
GAGCAAATAGCAGTTGGAGATGCGCGAAACAACTACTCGAGTATTCAGTA
ACGAACTCTCAAAGGCGCTTGGCAATTTTTTGTTTTTTCGATCCACTGCA
TTCTCATATCATAGGACACGAAAACCGATCTACAACTTTATTCCCACTTG
CACGACATAAATCGTTTCCTGCAAAAAAAGCTTTCAACGTGCGGCTCTAA
AGTTAGCTCTCTCCGAGATCTGCAAGTCATGTTGCTTTCATTTGTTGTTT
TCCGACGGGGTATGCCTGGCTGATCAATAAACAGACATGGATCGAGAGGG
GGGATGCGCGGACACATTTTAGTCCGCGGTCTCCCCCGGTAGGGGGGGAG
GGGGGGGGGTGAGAGGGTCACGTGTATGTTTTCAGTGCTTGTTTGTGGTA
CCTAACGAATCTGCTGAAAAGTTGGTTGTAGTAAGGAGGAGAGACTTCAG
AGTGGATATGTATGAACGCCCCGCAGTGGCGAACTGTCAAGAAGGGAGGG
GGGTGTATCCTCAACAGAAGCGAAAATACGTGCCCCGAGGCGGTGGTCCT
TCTTTGGGGGAAAGGCCAGAAAAAATCTCACACCACCAGCCACAACAACC
ATGCTGGCGAGGCTGGAGAGCCGCTGAGTGTATCGTCGCCAACCAGCCTA
ACATGTGAATACGCACACCCGGCGAACCTCGAGGAAAATGAGAGTACTGT
ACCGCGTGTGGTGTCTTGACGACGACATGCACATGCTCGAGAAGAGGACA
CGCTTCCTCAAATGGGCAGGTCGATTCGAGGAAGTTGCAAGACTTTGTGC
GCTTACATTCGCTGGCATCAACCGCGCTAGCCGGCTGACTATTGAGAAGG
CGTTGTGGACGGACAGACAACTACGCTTGGTCTGTGTGTCTTGTTTGCAT
CTACCGCGTGCAGTGGGTGACGAGTGAGAAAATGCTGTCAGTGTCGACAG
GGAGGCAGACGTCTGAAGAATGTCCGACGCCCAAAATGTACAAAACAAAT
GTCTCAAGCACAACCTTTGTAGCTACGCCGTGCTCGCACCTGATGAGCCA
CTGAGCTGAGGGCGTTGGTGCGTGTATGAAAGAGCCGCACGTTAACGTTG
TTTTGTGGGGCACCACATATGTATTTTCTCTCTGGCGATTGACGAGAGAG
AGAGACAAAGGGATAAGGGAGCAGCTCTTGAGGGGGACCTTTCTCTGTTT
TATGGCGCCGATTTAGAAACAGTATCGAGGGGCACTCTGTTGCCCGGGAC
TGAAGGGGTGACGCCGACACTAACAACCATGAGGGCACCCGGGATTTACT
TGTGGCCCACCTGCTGGCCTCGTTGTTGTAGGAATCGCGTGTAGAAATTA
TTGAGAACTAGTTCGTATATTAAAACCATGCGCAGCCGCGTAAATCCTAA
CCCCTCCCCCCGCCCTCTCTCTCTCCTACTATATCCTCCGTCTGTGTCTC
GTTCCTTGCTGTCTGTCTCTGTCTTTGTGTTTGCCAGGACTACAACAAGT
CCCACTCGGTAACCGCGATGAAGGCCAACCCCCTCGGTGGCTCTTCCATG
GCCAAGGGCATCGTTTTGGAGAAGATGTGAGTTTTTATAGTTCTCGAGCC
TCTCGCTATCCCCCCCCTCCCCCGCATGCTTTCTCATGGTACACGCACAC
CAAAGACTGCCGAAGATGGTGATGAGACGAGTATTTGGTTGTGCGGTATG
GCGGCGTACAGGTCGCTCCGCGATGCTCTGTGTCTGAAGGAATTTACACT
GTTGTACTTCGTGGTCATCGTCATGATGTTTACTCTGAGTAGGTAGTGTA
CGCATAGGGCGCGCATCACTGCGGTACCACCCCCACGTTGCGAAACACAT
GCCTAAATCCCATGCGACCCCGTCGAAAAGACCGGCCAGGTTCATGTGCT
GGTTCAGTCGCCTTTCAGCTGTCCTGCCTGCCCCCTGTGCTTCCTACTGC
CGTCCTTCTCGAAGCACTCGCAACTCCTTTTATATTCACCCCTTCTAGCC
CGTCTAGTCTGTATCAAGTACACCCCCAATTCGGTGCTGGAATCTAATTA
TTTTATGATTCAGAATCCTGTGCGAATGCGAAAACAATGCACTCTGTTTT
TCCTCCGTGGACTTGCAGCGGTATCGAGGCCAAGCAGCCTAACTCTGCCA
TCCGGAAGTGCGTGCGCGTGCAGCTCATCAAGAACGGAAAGAAGCTGGCG
GCCTTCGTGCCCCGCGACGGTTGCCTCAACTTCACGGACGAGAACGTGAG
TCTTTCTTTTTTTATTTTCTGCGTTTTTTCTATCGTACAGAACGCGCCAC
CACTTAAGAATCCAGGAACTAAGAAATTGAGCCTAAAAAACAGCAAATTT
TAAGAACGTGAGCACCATTTGTAAGCTCCGTTAAGAACTCCTACACTAAA
CGTATATAGCGACCATTCGTAGCATGACCGTAGGAACTAACAACCTCAGC
CTCGGTCAAAAGAAGAGGTTCTTAAGTGGTGGCGCCTTCTGTAGTGCGAC
TGACTTAAAACTCCACGGGTGACAATAATTGATTTGTTCTTTGCTTCTCT
TCGTGGTCCCGCGATTTGCTCAACTTTTACTTTTTAGAAGACAAGAACAT
GTTTCGCCCTACCACACTTGTCCAGTCACGTGCAAGGTGAGTCGTGCTCT
TTTCTTCCATGGGTATTATCATTCCGCGCCGAGATCAGTACTGGATGCGT
AGTGCCACTACCCTTTTGACCTTCTTGTTTTTGTGTTTTTCTGCAGGACG
AGGTGCTGATCTCCGGATTCGGTCGCCGTGGTCACGCCGTGGGTGACATC
CCCGGTGTCCGGTTCAAGGTGGTCAAGGTGGCCGGTGTCGCGCTGCTGGC
CCTCTACAAGGACAAGAAGGAGAAGCCGCGGTCCTAAGAACGTTCTCGAG
AACGGACCCAGGCCGCGCTCTCTCTCTCTCAAGCTCGTTACGGCGTCTCA
GAGGGAGGGGGGTTACGCGGATTCATGAGTGCGAACATGTCGCCATGTAG
TACCATGTTTTCCCTGGCGATACGGAGGATTTTTGGTTGGGGAAGATTAG
CTCTTTTGATGGAGAGCTGGTTCTTTTGCATCTGCTGTGTCCCGCGTTCT
TGAAATGAAATACGCTGCTGCTGCTTTGCTCCGAGGTGCGTTGCCGAACT
GGATGGGAAAAATCCCGGAAATGTCTTCATTGCTGCTGCGAAGATGAAGA
TATTTTTCCCGTCTTTAAAAAATATATATTCTCGTGCGTGGGTGCCGCTT
GGTGAAAGCCCAACACACACCAGGAACAGACGATGACGACATTGCGCACC
AAAGTACATGGGCCGCGTTGCTGTTGTTATCGTGGCGATCTCTTGCCGGA
GCTACAGCCGTGACCGCCCCAAGTTAGGGCCAAGCTCTTTTTTCTCAACT
CGCTTGCTTGTGGCACCTACCAAACCAATGACGCAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1097:14562..22347+

>mRNA_Ecto-sp9_F_contig1097.845.1 ID=mRNA_Ecto-sp9_F_contig1097.845.1|Name=mRNA_Ecto-sp9_F_contig1097.845.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1248bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1097:14562..22347+ (Ectocarpus species9 EcSCA_722f female)
ATGGGTGTTATGCAAAACAAGGCCCCGCCGAACGGGTCGGCGTGTTTCCG
CACAGTACGAAGCGTTGTTGGCGCGCGAGCTCTTCAATGTAGAGATGGGT
GTTATGCAAAACAAGGCCCCGCCGAACGGGTCGGCGTGTTTCCGCACAGT
ACGAAGCGTTGTTGGCGCGCGAGCTCTTCAATGTAGAGGCGCAGCAGTCA
GCAGCAGCAGCGGCACCAACATCTCCGAGGCCTCAAACCTTCAAACCTTT
GCCACCGGGCAACTAGGTTTATCCTCAAGGCGCAGCAGTCAGCAGCAGCA
GCGGCACCAACATCTCCGAGGCCTCAAACCTTCAAACCTTTGCCACCGGG
CAACTAGGTTTATCCTCAAGCATGGGTAAGGGAAAGCCGGCGGGCATCCG
CGCGGGGCGCAAGCTCCGCATCCACCGCCGTAACGAGCGGTGGGCGAGCA
AGCATGGGTAAGGGAAAGCCGGCGGGCATCCGCGCGGGGCGCAAGCTCCG
CATCCACCGCCGTAACGAGCGGTGGGCGAGCAAGGACTACAACAAGTCCC
ACTCGGTAACCGCGATGAAGGCCAACCCCCTCGGTGGCTCTTCCATGGCC
AAGGGCATCGTTTTGGAGAAGATGACTACAACAAGTCCCACTCGGTAACC
GCGATGAAGGCCAACCCCCTCGGTGGCTCTTCCATGGCCAAGGGCATCGT
TTTGGAGAAGATCGGTATCGAGGCCAAGCAGCCTAACTCTGCCATCCGGA
AGTGCGTGCGCGTGCAGCTCATCAAGAACGGAAAGAAGCTGGCGGCCTTC
GTGCCCCGCGACGGTTGCCTCAACTTCACGGACGAGAACCGGTATCGAGG
CCAAGCAGCCTAACTCTGCCATCCGGAAGTGCGTGCGCGTGCAGCTCATC
AAGAACGGAAAGAAGCTGGCGGCCTTCGTGCCCCGCGACGGTTGCCTCAA
CTTCACGGACGAGAACGACGAGGTGCTGATCTCCGGATTCGGTCGCCGTG
GTCACGCCGTGGGTGACATCCCCGGTGTCCGGTTCAAGGTGGTCAAGGTG
GCCGGTGTCGCGCTGCTGGCCCTCTACAAGGACAAGAAGGAGAAGCCGCG
GTCCTAAGACGAGGTGCTGATCTCCGGATTCGGTCGCCGTGGTCACGCCG
TGGGTGACATCCCCGGTGTCCGGTTCAAGGTGGTCAAGGTGGCCGGTGTC
GCGCTGCTGGCCCTCTACAAGGACAAGAAGGAGAAGCCGCGGTCCTAA
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