mRNA_Ecto-sp9_F_contig10853.742.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10853.742.1
Unique NamemRNA_Ecto-sp9_F_contig10853.742.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10853.742.1 vs.
Match: Tafazzin (family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G278_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 2.820e-64
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 1
Query:   28 RPEGEPLLTVANHASTLDDPAVMAVLLPWDIVVRPSLMRWSVCSQEICFETRAIASFFGAGKVLPIERGGGLDQKLLLNFSRKLAAGGWCHIFPEGKTVQ 327
            RPEGEPLLTVANHASTLDDPAVMAVLLPWDIVVRP LMRWSVCSQEICFETRAIASFFGAGKVLPIERGGG+DQKLLLNFSRKLAAGGWCHIFPEGKTVQ
Sbjct:   36 RPEGEPLLTVANHASTLDDPAVMAVLLPWDIVVRPRLMRWSVCSQEICFETRAIASFFGAGKVLPIERGGGVDQKLLLNFSRKLAAGGWCHIFPEGKTVQ 135          
BLAST of mRNA_Ecto-sp9_F_contig10853.742.1 vs.
Match: Tafazzin (family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF50_9STRA)

HSP 1 Score: 146 bits (368), Expect = 4.150e-41
Identity = 66/100 (66.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:   28 RPEGEPLLTVANHASTLDDPAVMAVLLPWDIVVRPSLMRWSVCSQEICFETRAIASFFGAGKVLPIERGGGLDQKLLLNFSRKLAAGGWCHIFPEGKTVQ 327
            RPEG+PLLTV NH STLDDPA+     PW + + P  MRW++CSQEICF     A+FFG+GKVLPIERGGG+DQ  LL F+R++AAG WCHIFPEG+TVQ
Sbjct:   38 RPEGKPLLTVGNHNSTLDDPALFGAFAPWSVDLTPRQMRWTICSQEICFMN---AAFFGSGKVLPIERGGGIDQVQLLKFARRMAAGTWCHIFPEGRTVQ 134          
BLAST of mRNA_Ecto-sp9_F_contig10853.742.1 vs.
Match: Tafazzin (family protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0C2_9STRA)

HSP 1 Score: 138 bits (348), Expect = 5.470e-37
Identity = 63/101 (62.38%), Postives = 77/101 (76.24%), Query Frame = 1
Query:   25 GRPEGEPLLTVANHASTLDDPAVMAVLLPWDIVVRPSLMRWSVCSQEICFETRAIASFFGAGKVLPIERGGGLDQKLLLNFSRKLAAGGWCHIFPEGKTVQ 327
            GRPE  PL+TVANHAS LDDPA++A +LPW IV++PS  RW++C+QE+CF+   IA+F G GKVLPI+RG G+DQ  LL   R  AAG W HIFPEGK  Q
Sbjct:  115 GRPEDTPLITVANHASVLDDPALLAAMLPWRIVLQPSKHRWAICTQEVCFKDDLIAAFVGCGKVLPIKRGAGVDQPQLLELCRHAAAGRWVHIFPEGKINQ 215          
BLAST of mRNA_Ecto-sp9_F_contig10853.742.1 vs.
Match: Tafazzin (family protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NY36_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.250e-36
Identity = 59/94 (62.77%), Postives = 76/94 (80.85%), Query Frame = 1
Query:   46 LLTVANHASTLDDPAVMAVLLPWDIVVRPSLMRWSVCSQEICFETRAIASFFGAGKVLPIERGGGLDQKLLLNFSRKLAAGGWCHIFPEGKTVQ 327
            ++TV+NH ST+DDP +  +LLPWD+ +RP  +RW++CSQEICF+  AIA+ FGAGKVLPI R GG+DQ LLL F+RK+A G W H+FPEGKT Q
Sbjct:  154 VITVSNHNSTIDDPVLFGLLLPWDLKLRPMKIRWTLCSQEICFKNPAIAAMFGAGKVLPIRRQGGIDQPLLLEFARKIAGGDWVHVFPEGKTNQ 247          
BLAST of mRNA_Ecto-sp9_F_contig10853.742.1 vs.
Match: Tafazzin (family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ81_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 3.210e-36
Identity = 60/100 (60.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:   28 RPEGEPLLTVANHASTLDDPAVMAVLLPWDIVVRPSLMRWSVCSQEICFETRAIASFFGAGKVLPIERGGGLDQKLLLNFSRKLAAGGWCHIFPEGKTVQ 327
            RP G PLLTV NH S +DDP V+  +LP  + VRP LMRW++C+QEICF+  A  + FG+ KV+PI RG G+DQ+LLLNF R+L  GGWCHIFPEG   Q
Sbjct:   95 RPSGVPLLTVCNHCSPVDDPGVLVGMLPARVTVRPELMRWTICAQEICFKWTAAGTGFGSAKVMPIARGSGIDQRLLLNFYRRLLGGGWCHIFPEGHCEQ 194          
BLAST of mRNA_Ecto-sp9_F_contig10853.742.1 vs.
Match: Tafazzin (family protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VIQ8_9STRA)

HSP 1 Score: 120 bits (302), Expect = 3.620e-33
Identity = 55/96 (57.29%), Postives = 69/96 (71.88%), Query Frame = 1
Query:   40 EPLLTVANHASTLDDPAVMAVLLPWDIVVRPSLMRWSVCSQEICFETRAIASFFGAGKVLPIERGGGLDQKLLLNFSRKLAAGGWCHIFPEGKTVQ 327
            E LLTV+NH S +DDP +  +L+P D+  RP   RW++CSQEICF+  A+A+FFGAG+VLPI RG G+DQ L   FS KL  G W H+FPEGK  Q
Sbjct:    1 EALLTVSNHRSNVDDPVLFGLLMPDDVRNRPHKTRWTLCSQEICFQNPALAAFFGAGRVLPIRRGAGVDQPLFDEFSAKLDRGSWVHLFPEGKVNQ 96          
BLAST of mRNA_Ecto-sp9_F_contig10853.742.1 vs.
Match: Tafazzin (family protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K3X0_GUITC)

HSP 1 Score: 124 bits (311), Expect = 1.230e-32
Identity = 56/102 (54.90%), Postives = 70/102 (68.63%), Query Frame = 1
Query:   28 RPEGEPLLTVANHASTLDDPAVMAVLLPWDIVVRPSLMRWSVCSQEICFET--RAIASFFGAGKVLPIERGGGLDQKLLLNFSRKLAAGGWCHIFPEGKTVQ 327
            RP G PL+TVANH S  DDP +M  L PWD+ + P  MRW +C+QEICF      I +F G G+ LPI RGGG+DQ LL + +R+LAAG W H+FPE + VQ
Sbjct:   36 RPAGIPLITVANHESCCDDPGLMGALTPWDVAIDPIRMRWGLCTQEICFPKGKHLIHTFIGCGQALPIRRGGGVDQPLLFDVARELAAGRWVHVFPEARVVQ 137          
BLAST of mRNA_Ecto-sp9_F_contig10853.742.1 vs.
Match: Tafazzin (family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU4_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.930e-32
Identity = 56/101 (55.45%), Postives = 75/101 (74.26%), Query Frame = 1
Query:   28 RPEGEPLLTVANHASTLDDPAVMAVLLPWDIV-VRPSLMRWSVCSQEICFETRAIASFFGAGKVLPIERGGGLDQKLLLNFSRKLAAGGWCHIFPEGKTVQ 327
            R  G PL+TV+NHA  LDDP ++A L+P+ +  ++P LMR+++CSQ+ICF    + SFFGA KV+PI RG G+DQ+LL N  R+LA+G WCHIFPEG   Q
Sbjct:  153 RGNGTPLITVSNHACPLDDPCMLAALMPFRLAALKPELMRFTICSQDICFNNGVLESFFGAAKVMPIARGEGIDQRLLQNMQRRLASGAWCHIFPEGSCFQ 253          
BLAST of mRNA_Ecto-sp9_F_contig10853.742.1 vs.
Match: Tafazzin (family protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XWS2_HEMAN)

HSP 1 Score: 124 bits (311), Expect = 1.090e-31
Identity = 53/101 (52.48%), Postives = 77/101 (76.24%), Query Frame = 1
Query:   28 RPEGEPLLTVANHASTLDDPAVMAVLLPWDIVVRPSLMRWSVCSQEICFETRA-IASFFGAGKVLPIERGGGLDQKLLLNFSRKLAAGGWCHIFPEGKTVQ 327
            RP G PLLTV+NH S+LDDP +M+ L+PWD+++ PS +RW++ +Q+I F  +  + SF   G+VLP+ RGGG+D  LLL+F+R++AAG W H+FPE + VQ
Sbjct:  127 RPAGVPLLTVSNHQSSLDDPGLMSSLIPWDVIMTPSRVRWAIATQDIVFPKKPFVQSFMTCGQVLPVHRGGGIDHALLLDFARQMAAGRWVHVFPEARVVQ 227          
BLAST of mRNA_Ecto-sp9_F_contig10853.742.1 vs.
Match: Tafazzin (family protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ALX1_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.820e-28
Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 1
Query:   22 LGRPEGEPLLTVANHASTLDDPAVMAVLLPWDIVVRPSLMRWSVCSQEICFETRAIAS--FFGAGKVLPIERGGGLDQKLLLNFSRKLAAGGWCHIFPEGKTVQ 327
            L RP+   L+TV NH++T+DDPAV+A +LPW    RPSL RWS+CSQE C+    + S  FFG+ K LPI+RG G+D   L +  +++  G W HIFPEGK VQ
Sbjct:   94 LSRPDHRALITVTNHSATVDDPAVLAAMLPWSCA-RPSLSRWSICSQEYCYAKGPLLSTIFFGS-KTLPIKRGAGIDHPFLQDLFQRVQDGDWVHIFPEGKIVQ 195          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10853.742.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Tafazzin2.820e-6498.00family protein n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
Tafazzin4.150e-4166.00family protein n=1 Tax=Tribonema minus TaxID=30337... [more]
Tafazzin5.470e-3762.38family protein n=1 Tax=Rhizochromulina marina TaxI... [more]
Tafazzin1.250e-3662.77family protein n=1 Tax=Leptocylindrus danicus TaxI... [more]
Tafazzin3.210e-3660.00family protein n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
Tafazzin3.620e-3357.29family protein (Fragment) n=1 Tax=Pseudictyota dub... [more]
Tafazzin1.230e-3254.90family protein n=1 Tax=Guillardia theta (strain CC... [more]
Tafazzin1.930e-3255.45family protein n=1 Tax=Tribonema minus TaxID=30337... [more]
Tafazzin1.090e-3152.48family protein (Fragment) n=2 Tax=Hemiselmis ander... [more]
Tafazzin1.820e-2851.92family protein n=1 Tax=Aphanomyces astaci TaxID=11... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10853contigEcto-sp9_F_contig10853:1755..2821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.1
Seed ortholog evalue1e-51
Seed eggNOG ortholog2880.D7G278
KEGG rclassRC00004,RC00037
KEGG koko:K13511
KEGG ReactionR09037
KEGG Pathwayko00564,map00564
EggNOG free text desc.cardiolipin acyl-chain remodeling
EggNOG OGsKOG2847@1,KOG2847@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928307.365714-CDS-Ecto-sp9_F_contig10853:1754..19671622928307.365714-CDS-Ecto-sp9_F_contig10853:1754..1967Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10853 1755..1967 +
1692277829.2457392-CDS-Ecto-sp9_F_contig10853:1754..19671692277829.2457392-CDS-Ecto-sp9_F_contig10853:1754..1967Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10853 1755..1967 +
1622928307.3787196-CDS-Ecto-sp9_F_contig10853:2707..28211622928307.3787196-CDS-Ecto-sp9_F_contig10853:2707..2821Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10853 2708..2821 +
1692277829.260017-CDS-Ecto-sp9_F_contig10853:2707..28211692277829.260017-CDS-Ecto-sp9_F_contig10853:2707..2821Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10853 2708..2821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10853.742.1prot_Ecto-sp9_F_contig10853.742.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10853 1755..2821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10853.742.1

>prot_Ecto-sp9_F_contig10853.742.1 ID=prot_Ecto-sp9_F_contig10853.742.1|Name=mRNA_Ecto-sp9_F_contig10853.742.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=109bp
MSAPSPCLGRPEGEPLLTVANHASTLDDPAVMAVLLPWDIVVRPSLMRWS
VCSQEICFETRAIASFFGAGKVLPIERGGGLDQKLLLNFSRKLAAGGWCH
IFPEGKTVQ
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mRNA from alignment at Ecto-sp9_F_contig10853:1755..2821+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10853.742.1 ID=mRNA_Ecto-sp9_F_contig10853.742.1|Name=mRNA_Ecto-sp9_F_contig10853.742.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1067bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10853:1755..2821+ (Ectocarpus species9 EcSCA_722f female)
ATGAGCGCCCCTTCCCCGTGCCTCGGCAGACCAGAGGGAGAACCGCTCTT GACGGTGGCGAACCACGCGTCGACGCTGGACGACCCCGCGGTGATGGCGG TGCTGCTGCCCTGGGATATCGTGGTCCGGCCGAGTCTGATGCGGTGGTCG GTCTGCAGCCAGGAGATCTGCTTCGAGACGAGGGCGATCGCTTCCTTTTT CGGCGCTGGAAAGGTGTGTGTGTGTTTGGGTGTTTTCGTTTTTAGCATCA GCGGCGCCAACCGGCTGACCAATGAACAGCCGTCAATGCCAACGGCTAAA TACCATGTTTTGTGTGTGTGTGTTTTGTGTGTTTGTTCTTCATACAATGT ATAGTATTAACCGTGATAACGGGTGAAATGCATTATGACAAACGGAGTAG ACCATGGGAGGCCCCGTAATTTCCTATTCGCCCCCCCCCCCCCCCTCTTC TGGGGGACATCACCTTGCACCAGTTTTGTTTACATTGGTTTGCAGGATAG TTTCTTGTAAGTGCTAGAGGTTGGGTGGAGAGGGGGGCGTTTCCGACTGC TGTCTCAAAGGTATGGAAAGAGCGGCACCCTTGATGCAGGTACGGTAGGT GACATACGATCACACCCCCTTGACCGATTTTCAAAGCTGTATTGCTCCTC AGCAGAAAGCGTGTTGGTGCCGAAAACGGCGGCGCTAGAACCGTCTCGTC GAGAGCTACCCAAAAGACGTATCGTATGCGTCCTGCCAATCGTGCTGTAG TAAGTAGAGCTATGAAAATCGGTCCAGGCGGTGGTGTCATGTCTTGTGTC GCGGACCGTAGCTGCCGAAGGCATGGCGTCATCTTGTGTACCCCCACGAG CGGGGGCGGTGAGTGAACAAACTCTCACGGGGTAGTTATTGTCAATCGAC GTGATGGTCGTTTCACTAATAGATGGTGTGCTTATAATGTCTGCCTCGCT CAGGTCCTGCCCATCGAGCGCGGCGGCGGGCTCGACCAGAAGCTGCTCTT GAACTTTTCGCGAAAGCTCGCGGCCGGGGGGTGGTGCCACATTTTCCCAG AGGGAAAAACCGTCCAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10853:1755..2821+

>mRNA_Ecto-sp9_F_contig10853.742.1 ID=mRNA_Ecto-sp9_F_contig10853.742.1|Name=mRNA_Ecto-sp9_F_contig10853.742.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=654bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10853:1755..2821+ (Ectocarpus species9 EcSCA_722f female)
ATGAGCGCCCCTTCCCCGTGCCTCGGCAGACCAGAGGGAGAACCGCTCTT
GACGGTGGCGAACCACGCGTCGACGCTGGACGACCCCGCGGTGATGGCGG
TGCTGCTGCCCTGGGATATCGTGGTCCGGCCGAGTCTGATGCGGTGGTCG
GTCTGCAGCCAGGAGATCTGCTTCGAGACGAGGGCGATCGCTTCCTTTTT
CGGCGCTGGAAAGATGAGCGCCCCTTCCCCGTGCCTCGGCAGACCAGAGG
GAGAACCGCTCTTGACGGTGGCGAACCACGCGTCGACGCTGGACGACCCC
GCGGTGATGGCGGTGCTGCTGCCCTGGGATATCGTGGTCCGGCCGAGTCT
GATGCGGTGGTCGGTCTGCAGCCAGGAGATCTGCTTCGAGACGAGGGCGA
TCGCTTCCTTTTTCGGCGCTGGAAAGGTCCTGCCCATCGAGCGCGGCGGC
GGGCTCGACCAGAAGCTGCTCTTGAACTTTTCGCGAAAGCTCGCGGCCGG
GGGGTGGTGCCACATTTTCCCAGAGGGAAAAACCGTCCAGGTCCTGCCCA
TCGAGCGCGGCGGCGGGCTCGACCAGAAGCTGCTCTTGAACTTTTCGCGA
AAGCTCGCGGCCGGGGGGTGGTGCCACATTTTCCCAGAGGGAAAAACCGT
CCAG
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