mRNA_Ecto-sp9_F_contig108.698.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig108.698.1
Unique NamemRNA_Ecto-sp9_F_contig108.698.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig108.698.1 vs.
Match: sushi, (von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A8F0E)

HSP 1 Score: 84.0 bits (206), Expect = 2.440e-15
Identity = 55/156 (35.26%), Postives = 82/156 (52.56%), Query Frame = 1
Query:  148 GDVLFVAVRGTEKKQDWKNNMKCSLIEYPLNSKRKVHVGYLLEWLSVQDEVMFKIDEMIDKHKDNIHKVTLCGHS-AGTVAVLAALHFTERGKIDKSKSMQSDAITFGSPRLGNKHFKEYFEQNVQCT--RIVLDRDVVTRVP-FWGGYKHVGQPI 603
            G+ + VA RGT     W NN       Y      K H G+L  + SV  +++ ++  +  KH ++  KV + GHS  G +A LAA+   + G         +D ITFGSPR+GNK F EY ++ ++    R+   +D+VT +P    GY+HVGQ I
Sbjct:  368 GNAIVVAFRGTABINGWVNNAXFLKTAYQNCQGCKTHKGFLKTFNSVNMQMLARVSALHHKHPNS--KVIVTGHSLGGALATLAAVELAKAG-------YNTDLITFGSPRVGNKGFSEYADKTLKSMNLRVTYKKDLVTVLPPKLIGYRHVGQEI 514          
BLAST of mRNA_Ecto-sp9_F_contig108.698.1 vs.
Match: proprotein (convertase subtilisin/kexin type 5-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C2FEF)

HSP 1 Score: 83.6 bits (205), Expect = 3.500e-15
Identity = 58/187 (31.02%), Postives = 98/187 (52.41%), Query Frame = 1
Query:   85 HAQEAYVNHPPTDFQCCM----QVAGDV------LFVAVRGTEKKQDWKNNMKCSLIEYPLNSKRKVHVGYLLEWLSVQDEVMFKIDEMIDKHKDNIHKVTLCGHS-AGTVAVLAALHFTERGKIDKSKSMQSDAITFGSPRLGNKHFKEYFEQNVQCT--RIVLDRDVVTRVPFWG-GYKHVGQPI 603
            +A EAY+  P +     +    +V G V      + V+ RGT   +DW +N+K    +Y   +  +VH+G+   + SV+ +++ ++  +   H  +  KV + GHS  G  A L A+   + G         +D ITFGSPR+GNK F E+ +++++ +  R+    D+VT +P    GY+HVGQ I
Sbjct:  434 YAAEAYLERPDSSTSTLVDSDKKVHGFVEYKDNKIVVSFRGTVDAKDWYSNLKFLKRDYKSCTGCEVHIGFSNYYNSVRLQMLARVRALSHSHPGS--KVVVTGHSLGGAQATLTAVELAKNG-------YDTDLITFGSPRVGNKQFSEFVDKSLKGSNLRVTYKNDIVTVIPPQSIGYRHVGQEI 611          
BLAST of mRNA_Ecto-sp9_F_contig108.698.1 vs.
Match: uncharacterized (protein LOC124452008 n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04F997)

HSP 1 Score: 83.6 bits (205), Expect = 3.850e-15
Identity = 60/187 (32.09%), Postives = 94/187 (50.27%), Query Frame = 1
Query:   85 HAQEAYVNHPPTDFQCC----------MQVAGDVLFVAVRGTEKKQDWKNNMKCSLIEYPLNSKRKVHVGYLLEWLSVQDEVMFKIDEMIDKHKDNIHKVTLCGHS-AGTVAVLAALHFTERGKIDKSKSMQSDAITFGSPRLGNKHFKEYFEQNVQCT--RIVLDRDVVTRVP-FWGGYKHVGQPI 603
            +AQ+AY    P D +            ++   + + V+ +G+    DWKNN+K     YP  S  KVH+G+   +  ++ +++ K++     + ++  KV + GHS  G +A LAA+   +          Q D ITFGSPR+GNK FKE  + N+     R+   RD VT +P    GY+HVG  I
Sbjct:  818 YAQQAYEEVNPPDSRLLDTGDRRVKGFVKYEDNTIVVSFQGSADLIDWKNNLKFLKKSYPGCSNCKVHIGFFDSYSPLKQQMLDKVNAFFLLNPNS--KVLVTGHSLGGAMATLAAVDLVKT-------RYQVDLITFGSPRVGNKEFKELVDSNLNGLNLRVTYKRDPVTVIPPQLLGYRHVGLEI 995          
BLAST of mRNA_Ecto-sp9_F_contig108.698.1 vs.
Match: Lipase_3 (domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q8MYE7_DICDI)

HSP 1 Score: 81.3 bits (199), Expect = 5.940e-15
Identity = 52/151 (34.44%), Postives = 75/151 (49.67%), Query Frame = 1
Query:  118 TDFQCCMQVAGDVLFVAVRGTEKKQDWKNNMKCSLIEYPLNSKRKVHVGYLLEWLSVQDEVMFKIDEMIDKHKDNIHKVTLCGHSAGTVAVLAALHFTERGKIDKSKSMQSDAITFGSPRLGNKHFKEYFEQ-NVQCTRIVLDRDVVTRVP 567
            TD Q  +   G+ + VA RG+   Q W  N++   I YPL    KVH G+   W SV+++V   ID  + +     +++ + GHS G  A LA L   E   I    S+ S    FGSPR+G+  F EYF        R+  ++D+V  VP
Sbjct:   85 TDTQAYVGYIGNEVIVAFRGSMDIQSWITNLQFLQIVYPLYPSAKVHSGFYDSWSSVREQVKSSIDLALKQCGKQCNEIKVTGHSLG--AALATLAIAE---IQGWYSIPSTMYNFGSPRVGDSVFAEYFNSIQPNVIRVTYEQDLVPHVP 230          
BLAST of mRNA_Ecto-sp9_F_contig108.698.1 vs.
Match: Mastigoneme (n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HIG6_PARCT)

HSP 1 Score: 81.6 bits (200), Expect = 1.620e-14
Identity = 53/154 (34.42%), Postives = 79/154 (51.30%), Query Frame = 1
Query:  148 GDVLFVAVRGTEKKQDWKNNMKCSLIEYPLNSKRKVHVGYLLEWLSVQDEVMFKIDEMIDKHKDNIHKVTLCGHS-AGTVAVLAALHFTERGKIDKSKSMQSDAITFGSPRLGNKHFKEYFEQNVQCT--RIVLDRDVVTRVPFWG-GYKHVGQ 597
            G  + V+ RGT   + W NN K    +Y      KVH G+   + SVQ +++ K+      H ++  KV + GHS  G +A LAA+   + G         +D IT+GSPR+GNK F EY ++ +     R+   +D+VT  P    GY HVG+
Sbjct:  471 GKTIIVSFRGTVDTKGWINNAKFLKRDYQSCKGCKVHTGFSTFYNSVQMQLLAKVSAFSHAHPNS--KVIVTGHSLGGALATLAAVELAKAG-------YNTDLITYGSPRVGNKQFSEYVDKTMNGLNLRVTYKKDIVTASPPQSIGYWHVGR 615          
BLAST of mRNA_Ecto-sp9_F_contig108.698.1 vs.
Match: uncharacterized (protein LOC110252860 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BBEDB)

HSP 1 Score: 80.5 bits (197), Expect = 3.300e-14
Identity = 53/160 (33.12%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  139 QVAGDVLFVAVRG-TEKKQDWKNNMKCSLIEYPLNSKRKVHVGYLLEWLSVQDEVMFKIDEMIDKHKDNIHKVTLCGHS-AGTVAVLAALHFTERGKIDKSKSMQSDAITFGSPRLGNKHFKEYFEQNVQCT--RIVLDRDVVTRVPFWG-GYKHVGQPI 603
            + A   + V+ RG T   QDWKNN+      Y       VH G+L  +  +Q  ++ ++  +   H  +  KV + GHS  G +A  AA+   +RG         ++ IT+GSPR+GNK F EY ++ ++    R+    D+VT +P    GY HVGQ I
Sbjct:  257 EAANKTIIVSFRGSTVSYQDWKNNLDTQKANYTSCQGCLVHTGFLNYYHKLQISMLLRVGXLSHTHPKS--KVIVTGHSLGGALATFAAVDLAKRG-------YNTELITYGSPRVGNKKFSEYADKTLKSLNLRVTYKXDIVTVLPPQSKGYWHVGQEI 407          
BLAST of mRNA_Ecto-sp9_F_contig108.698.1 vs.
Match: hypothetical (protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644A7B7)

HSP 1 Score: 77.8 bits (190), Expect = 1.210e-13
Identity = 51/172 (29.65%), Postives = 86/172 (50.00%), Query Frame = 1
Query:   55 CRDVYDDTYLHAQEAYVNHPPTDFQCCMQVAGDVLFVAVRGTEKKQDWKNNMKCSLIEYPLNSKRKVHVGYLLEWLSVQDEVMFKIDEMIDKHKDNIHKVTLCGHSAGTVAVLAALHFTERGKIDKSKSMQSDAITFGSPRLGNKHFKEYFEQNVQCT-RIVLDRDVVTRVP 567
            C+   DD  + +    + +  TD  C +   G+ +FVA RG+     W  NMK     YP  +  +VH+G+   ++SVQ +V   +   + K+  +   + + GHS G    LA L   +   ++   ++ + + TFGSPR+GN  F+EY+      T R+V  +D+V  VP
Sbjct:   68 CQRCQDDFSIVSNPIVIYNNSTDTLCYVATYGETVFVAFRGSTDISSWITNMKFFQTSYPKVAGGEVHLGFYEAYMSVQADVQNALSYHL-KNCPSCTNIVVTGHSLG--GALATLCMAD--VVEWFSALPTMSYTFGSPRVGNIIFEEYYNSIQPNTWRVVNQKDIVPHVP 234          
BLAST of mRNA_Ecto-sp9_F_contig108.698.1 vs.
Match: Putative (lipase n=1 Tax=Colletotrichum sublineola TaxID=1173701 RepID=A0A066WXC3_COLSU)

HSP 1 Score: 74.7 bits (182), Expect = 1.640e-12
Identity = 49/149 (32.89%), Postives = 74/149 (49.66%), Query Frame = 1
Query:  154 VLFVAVRGTEKKQDWKNNMKCSLIEYPLNSKRKVHVGYLLEWLSVQDEVMFKIDEMIDKHKDNIHKVTLCGHSAGT-VAVLAALHFTERGKIDKSKSMQSDAITFGSPRLGNKHFKEYFE-QNVQCTRIVLDRDVVTRVPFWG-GYKHV 591
            ++ VA  GT+   DW NN+K  L++  L S  KVH G+   W  ++  V   +  +   H D  + V   GHS G  +A L++ H  ++        +  D+  +GSPR+GN+ F E+F  Q  Q  R+    D V R+P    GY HV
Sbjct:  100 LIVVAFHGTDGTDDWINNLKAGLVDSDLCSGCKVHDGFQDTWAGIEQTVTVVVPGLRSAHPD--YNVVTTGHSLGAALATLSSAHLRQQ------MGIPIDSYLYGSPRVGNQEFVEFFNGQPGQTFRVTHWDDPVPRLPGHDLGYYHV 240          
BLAST of mRNA_Ecto-sp9_F_contig108.698.1 vs.
Match: Lipase_3 (domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DKF8_9ZZZZ)

HSP 1 Score: 73.9 bits (180), Expect = 3.780e-12
Identity = 53/156 (33.97%), Postives = 82/156 (52.56%), Query Frame = 1
Query:  157 LFVAVRGTEKKQDWKNNMKCSLIEYPL-----NSKRKVHVGYLLEWLSVQDEVMFKIDEMIDKHKDNIHKVTLCGHS-AGTVAVLAALHFTE--RGKIDKSK-SMQSDAITFGSPRLGNKHFKEYFEQNVQ---CTRIVLDRDVVTRVPFWGGYKH 588
            L+   RGT   QD   N+   LI  P       S  KVH G+  ++ +++D ++    + + K+   +  V   GHS  G +A L A H     RG +D+SK  ++    TFGSPR+GNKHF  +F++NV+   C RI+  RD V ++P    ++H
Sbjct:   71 LYFVFRGTNDLQDAMVNI--DLIRVPFFEGLKQSHIKVHGGFKKQFDALKDGIL----KTLSKYMKQVETVQFIGHSLGGALATLFAGHVARFHRGYLDESKHEIKVVCHTFGSPRVGNKHFARWFQENVKSSDCARIMNLRDPVAQMPISAYFQH 220          
BLAST of mRNA_Ecto-sp9_F_contig108.698.1 vs.
Match: Lipase (n=1 Tax=Colletotrichum graminicola (strain M1.001 / M2 / FGSC 10212) TaxID=645133 RepID=E3QZS1_COLGM)

HSP 1 Score: 70.9 bits (172), Expect = 3.520e-11
Identity = 48/147 (32.65%), Postives = 69/147 (46.94%), Query Frame = 1
Query:  157 LFVAVRGTEKKQDWKNNMKCSLIEYPLNSKRKVHVGYLLEWLSVQDEVMFKIDEMIDKHKDNIHKVTLCGHSAGTVAVLAALHFTERGKIDKSKSMQSDAITFGSPRLGNKHFKEYFEQNV-QCTRIVLDRDVVTRVP-FWGGYKHV 591
            + VA  G+    DW  N+   L++ PL S  KVH G+   W  +Q  VM  +  +   H D  + +   GHS G     AAL      ++ +S  +  D   +GSPR+GN+ F E+F     Q  R+    D V R+P    GY HV
Sbjct:   87 IVVAFHGSSNVGDWITNLDVGLVDSPLCSGCKVHKGFQDSWSDIQQTVMAIVPGLRSVHAD--YNIVTTGHSLG-----AALATLSAAQLRQSMGIPIDTYLYGSPRIGNEDFVEFFNGLPGQTFRVTHWDDPVPRLPGHQFGYYHV 226          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig108.698.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
sushi,2.440e-1535.26von Willebrand factor type A, EGF and pentraxin do... [more]
proprotein3.500e-1531.02convertase subtilisin/kexin type 5-like n=1 Tax=De... [more]
uncharacterized3.850e-1532.09protein LOC124452008 n=1 Tax=Xenia sp. Carnegie-20... [more]
Lipase_35.940e-1534.44domain-containing protein n=1 Tax=Dictyostelium di... [more]
Mastigoneme1.620e-1434.42n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A... [more]
uncharacterized3.300e-1433.13protein LOC110252860 n=1 Tax=Exaiptasia diaphana T... [more]
hypothetical1.210e-1329.65protein n=1 Tax=Acytostelium subglobosum LB1 TaxID... [more]
Putative1.640e-1232.89lipase n=1 Tax=Colletotrichum sublineola TaxID=117... [more]
Lipase_33.780e-1233.97domain-containing protein n=1 Tax=viral metagenome... [more]
Lipase3.520e-1132.65n=1 Tax=Colletotrichum graminicola (strain M1.001 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig108contigEcto-sp9_F_contig108:18409..19017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue8.8e-25
Seed eggNOG ortholog2880.D8LPK4
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-185 lipase domain protein
Ec32 orthologEc-06_005070.1
Exons1
Model size609
Cds size609
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928300.5181735-CDS-Ecto-sp9_F_contig108:18408..190171622928300.5181735-CDS-Ecto-sp9_F_contig108:18408..19017Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig108 18409..19017 +
1692277826.9778986-CDS-Ecto-sp9_F_contig108:18408..190171692277826.9778986-CDS-Ecto-sp9_F_contig108:18408..19017Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig108 18409..19017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig108.698.1prot_Ecto-sp9_F_contig108.698.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig108 18409..19017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig108.698.1

>prot_Ecto-sp9_F_contig108.698.1 ID=prot_Ecto-sp9_F_contig108.698.1|Name=mRNA_Ecto-sp9_F_contig108.698.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=203bp
MEVSSHKLTGLHQTAARLCRDVYDDTYLHAQEAYVNHPPTDFQCCMQVAG
DVLFVAVRGTEKKQDWKNNMKCSLIEYPLNSKRKVHVGYLLEWLSVQDEV
MFKIDEMIDKHKDNIHKVTLCGHSAGTVAVLAALHFTERGKIDKSKSMQS
DAITFGSPRLGNKHFKEYFEQNVQCTRIVLDRDVVTRVPFWGGYKHVGQP
IQI
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mRNA from alignment at Ecto-sp9_F_contig108:18409..19017+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig108.698.1 ID=mRNA_Ecto-sp9_F_contig108.698.1|Name=mRNA_Ecto-sp9_F_contig108.698.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=609bp|location=Sequence derived from alignment at Ecto-sp9_F_contig108:18409..19017+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGGTTTCGTCACATAAGTTGACGGGGCTGCATCAAACAGCCGCGCG TTTGTGCAGAGACGTATACGACGACACATATCTCCACGCACAAGAGGCCT ACGTAAACCACCCGCCGACGGACTTCCAATGCTGTATGCAGGTAGCGGGC GATGTCCTCTTCGTCGCAGTTCGTGGCACAGAGAAGAAACAAGACTGGAA AAACAACATGAAATGCTCGCTTATCGAGTATCCCCTGAACTCCAAACGCA AGGTGCATGTGGGATACCTTCTGGAGTGGCTTTCCGTGCAGGACGAAGTC ATGTTCAAGATTGACGAAATGATCGACAAGCACAAGGACAACATCCACAA GGTGACCCTCTGCGGGCACAGTGCTGGCACAGTCGCGGTGCTGGCGGCGC TACATTTCACAGAAAGGGGGAAAATAGACAAAAGTAAAAGTATGCAGTCG GATGCTATCACGTTCGGGTCTCCCAGGCTCGGAAACAAACACTTCAAAGA ATACTTCGAGCAGAACGTCCAATGCACACGCATTGTGCTGGACAGAGATG TCGTCACTCGCGTGCCTTTCTGGGGAGGGTATAAGCATGTCGGTCAACCC ATACAGATC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig108:18409..19017+

>mRNA_Ecto-sp9_F_contig108.698.1 ID=mRNA_Ecto-sp9_F_contig108.698.1|Name=mRNA_Ecto-sp9_F_contig108.698.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1218bp|location=Sequence derived from alignment at Ecto-sp9_F_contig108:18409..19017+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGGTTTCGTCACATAAGTTGACGGGGCTGCATCAAACAGCCGCGCG
TTTGTGCAGAGACGTATACGACGACACATATCTCCACGCACAAGAGGCCT
ACGTAAACCACCCGCCGACGGACTTCCAATGCTGTATGCAGGTAGCGGGC
GATGTCCTCTTCGTCGCAGTTCGTGGCACAGAGAAGAAACAAGACTGGAA
AAACAACATGAAATGCTCGCTTATCGAGTATCCCCTGAACTCCAAACGCA
AGGTGCATGTGGGATACCTTCTGGAGTGGCTTTCCGTGCAGGACGAAGTC
ATGTTCAAGATTGACGAAATGATCGACAAGCACAAGGACAACATCCACAA
GGTGACCCTCTGCGGGCACAGTGCTGGCACAGTCGCGGTGCTGGCGGCGC
TACATTTCACAGAAAGGGGGAAAATAGACAAAAGTAAAAGTATGCAGTCG
GATGCTATCACGTTCGGGTCTCCCAGGCTCGGAAACAAACACTTCAAAGA
ATACTTCGAGCAGAACGTCCAATGCACACGCATTGTGCTGGACAGAGATG
TCGTCACTCGCGTGCCTTTCTGGGGAGGGTATAAGCATGTCGGTCAACCC
ATACAGATCATGGAGGTTTCGTCACATAAGTTGACGGGGCTGCATCAAAC
AGCCGCGCGTTTGTGCAGAGACGTATACGACGACACATATCTCCACGCAC
AAGAGGCCTACGTAAACCACCCGCCGACGGACTTCCAATGCTGTATGCAG
GTAGCGGGCGATGTCCTCTTCGTCGCAGTTCGTGGCACAGAGAAGAAACA
AGACTGGAAAAACAACATGAAATGCTCGCTTATCGAGTATCCCCTGAACT
CCAAACGCAAGGTGCATGTGGGATACCTTCTGGAGTGGCTTTCCGTGCAG
GACGAAGTCATGTTCAAGATTGACGAAATGATCGACAAGCACAAGGACAA
CATCCACAAGGTGACCCTCTGCGGGCACAGTGCTGGCACAGTCGCGGTGC
TGGCGGCGCTACATTTCACAGAAAGGGGGAAAATAGACAAAAGTAAAAGT
ATGCAGTCGGATGCTATCACGTTCGGGTCTCCCAGGCTCGGAAACAAACA
CTTCAAAGAATACTTCGAGCAGAACGTCCAATGCACACGCATTGTGCTGG
ACAGAGATGTCGTCACTCGCGTGCCTTTCTGGGGAGGGTATAAGCATGTC
GGTCAACCCATACAGATC
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