prot_Ecto-sp9_F_contig10776.677.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig10776.677.1
Unique Nameprot_Ecto-sp9_F_contig10776.677.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length464
Homology
BLAST of mRNA_Ecto-sp9_F_contig10776.677.1 vs.
Match: Pathogenesis-related (protein, class 1 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX3_ECTSI)

HSP 1 Score: 498 bits (1282), Expect = 8.180e-171
Identity = 363/391 (92.84%), Postives = 369/391 (94.37%), Query Frame = 0
Query:   74 MSRTSSAVVVLLALTHHPVTASNLRTTNLLDSSPSVVQHATSAAPPTRQASRYLRDSDDSSSDSDSNDYSPQELYVGCFQDDEQSPLLEFGFISGGFIIERCYMHCTDEGATFMGIKYGFQCSCGFGQEEDYTLNGPGECACECYGDRDGNCGGQWAFDLYSLRGGDDSATSVTPSPTASSTGFPMPTGFPILSAAPSTSFTWGPTGXXXXXXXXXXXGSTMTMTDDDEGYSMTAPPTPTRSLPTPSPSMLVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTEEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMTELVDLHNEARCVHIADPLTWSSTVASSAAEHAERLTAQCS 464
            MSRTSS VVVLLAL HHPVTASNLRTTNLLD+SP+VVQHATSAAPPTRQASR+LRDSDDSSSDSDSNDYSP+ LYVGCFQDDEQSPLLEFGFISGGFIIERCYMHCTDEGATFMGIKYGFQCSCGFGQEEDYTLNG GEC C CYG+RDGNCGGQWAFDLYSL GGDDS+TSVTPSPTASS GFPMPTGFPILSAAPSTSFTWGPTGXXXXXXXXXXX STMTMTDDD GYSMTAPPTP RSLPTPSPSMLVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        VTEEP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DMTELVDLHNEARCVH ADPLTWSSTVASSAAEHAERLTAQCS
Sbjct:    1 MSRTSSVVVVLLALAHHPVTASNLRTTNLLDTSPTVVQHATSAAPPTRQASRHLRDSDDSSSDSDSNDYSPKGLYVGCFQDDEQSPLLEFGFISGGFIIERCYMHCTDEGATFMGIKYGFQCSCGFGQEEDYTLNGTGECTCGCYGERDGNCGGQWAFDLYSLGGGDDSSTSVTPSPTASSIGFPMPTGFPILSAAPSTSFTWGPTGXXXXXXXXXXXXSTMTMTDDDGGYSMTAPPTPARSLPTPSPSMLVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------VTEEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADMTELVDLHNEARCVHNADPLTWSSTVASSAAEHAERLTAQCS 383          
BLAST of mRNA_Ecto-sp9_F_contig10776.677.1 vs.
Match: SCP (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZI7_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 1.040e-95
Identity = 246/291 (84.54%), Postives = 250/291 (85.91%), Query Frame = 0
Query:  177 MHCTDEGATFMGIKYGFQCSCGFGQEEDYTLNGPGECACECYGDRDGNCGGQWAFDLYSLRGGDDSATSVTPSPTASSTGFPMPTGFPILSAAPSTSFTWGPTGXXXXXXXXXXXGSTMTMTDDDEGYSMTAPPTPTRSLPTPSPSMLVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTEEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---DMTELVDLHNEARCVHIADPLTWSSTVASSAAEHAERLTAQCS 464
            MHCTDEGATFMG+KYGFQCSCGFGQEE+YTLNG GECAC CYGDRDGNCGGQWAFDLYSLRGGDDS+TSVTPSPTASSTGFPMPTGFP LSAAPSTSFTWGPTGXXXXXXXXXXX  TMTMTDDD GYSMTAPPTP RSLPTPSP M V          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX T+EP     XXXXXXXXXXXXXXXXXXXXXXXXXXX               DMTELVDLHNEARCVH ADPLTWSSTVASSAAEHAERLTAQCS
Sbjct:    1 MHCTDEGATFMGLKYGFQCSCGFGQEEEYTLNGTGECACGCYGDRDGNCGGQWAFDLYSLRGGDDSSTSVTPSPTASSTGFPMPTGFPNLSAAPSTSFTWGPTGXXXXXXXXXXXXXTMTMTDDDGGYSMTAPPTPARSLPTPSPHMPV---------EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQEPVVPRTXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPPTAPTPGSPTPADMTELVDLHNEARCVHNADPLTWSSTVASSAAEHAERLTAQCS 282          
BLAST of mRNA_Ecto-sp9_F_contig10776.677.1 vs.
Match: SCP (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCL1_9PHAE)

HSP 1 Score: 293 bits (749), Expect = 3.920e-92
Identity = 155/212 (73.11%), Postives = 169/212 (79.72%), Query Frame = 0
Query:   67 LHLLSEKMSRTSSAVVVLLALTHHPVTASNLRTTNLLDSSPSVVQHATSAAPPTRQASRYLRDSDDSSSDSDSNDYSPQELYVGCFQDDEQSPLLEFGFISGGFIIERCYMHCTDEGATFMGIKYGFQCSCGFGQEEDYTLNGPGECACECYGDRDGNCGGQWAFDLYSLRGGDDSATSVTPSPTASSTGFPMPTGFPILSAAPSTSFTWGP 278
            +++  +KMS TSS VVV+LAL HH VTA NLRTTN+LDSSP+VVQHATSA PPTRQASR+LRDSDDSSS SDSN YSP ELYVGCFQDDEQS LLEFGFISGGF +ERC+MHCTDEGATF+G+KYGFQCSC FGQEEDYTLNGPGE               +WAFDLYSL GGDDS+TSVT  PTASSTGFPMPT        PSTS  W P
Sbjct:    1 MYIFPQKMSSTSSVVVVVLALPHHAVTA-NLRTTNILDSSPTVVQHATSATPPTRQASRHLRDSDDSSSGSDSNGYSPWELYVGCFQDDEQSTLLEFGFISGGFNVERCFMHCTDEGATFLGLKYGFQCSCDFGQEEDYTLNGPGERL-------------RWAFDLYSLGGGDDSSTSVTSLPTASSTGFPMPTXXXXXXXXPSTSSLWHP 198          
BLAST of mRNA_Ecto-sp9_F_contig10776.677.1 vs.
Match: Pathogenesis-related (protein, class 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW7_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.460e-16
Identity = 66/169 (39.05%), Postives = 87/169 (51.48%), Query Frame = 0
Query:   82 VVLLALTHHPVT--ASNLRTTNLLDSSPSVVQHATSAAPPTRQ-ASRYLRDSDDSSSDSDSNDYSPQELYVGCFQDDEQSPLLEFGFISG-GFIIERCYMHCTDEGATFMGIKYGFQCSCGFGQEEDYTLNGPG-ECACECYGDRDGNCGGQWAFDLYSLRGGDDSATS 245
            V LLAL    V   A+NLR   +      VVQHATSA+PPTR  ASR+L DSD S  +           Y+GCF D ++  +L+    S      E+CY HC + GA +M  ++  +C C   ++ +Y  +G G EC   C G     CGG  AFDLY L G  D+  S
Sbjct:    6 VALLALAPGSVMVGAANLRQNEM------VVQHATSASPPTRSHASRHLYDSDTSKYE-----------YIGCFTDSQEDRILDDMLTSRTDMSTEKCYEHCMEMGAEYMATQWAQECFCSNNKDLEYDRHGSGAECDMSCTGVEGETCGGNHAFDLYKLGGSADNPPS 157          
BLAST of mRNA_Ecto-sp9_F_contig10776.677.1 vs.
Match: SCP (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK50_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 4.240e-9
Identity = 33/42 (78.57%), Postives = 34/42 (80.95%), Query Frame = 0
Query:  422 DMTELVDLHNEARCVHIADPLTWSSTVASSAAEHAERLTAQC 463
            DMT L+DLHNEARCVH ADPL WS  V SSAAEHA RLT QC
Sbjct:   79 DMTGLLDLHNEARCVHGADPLGWSDPVTSSAAEHAARLTDQC 120          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10776.677.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Pathogenesis-related8.180e-17192.84protein, class 1 n=3 Tax=Ectocarpus siliculosus Ta... [more]
SCP1.040e-9584.54domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
SCP3.920e-9273.11domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Pathogenesis-related1.460e-1639.05protein, class 1 n=1 Tax=Ectocarpus siliculosus Ta... [more]
SCP4.240e-978.57domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002889Carbohydrate-binding WSCSMARTSM00321SLG_2coord: 145..237
e-value: 4.3E-4
score: 27.1
IPR002889Carbohydrate-binding WSCPFAMPF01822WSCcoord: 148..227
e-value: 1.2E-9
score: 38.3
IPR002889Carbohydrate-binding WSCPROSITEPS51212WSCcoord: 145..237
score: 9.234
IPR035940CAP superfamilyGENE3D3.40.33.10coord: 420..464
e-value: 2.4E-5
score: 26.5
IPR035940CAP superfamilySUPERFAMILY55797PR-1-likecoord: 401..464
NoneNo IPR availablePANTHERPTHR24269:SF16coord: 145..289
NoneNo IPR availablePANTHERPTHR24269FAMILY NOT NAMEDcoord: 145..289

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10776contigEcto-sp9_F_contig10776:2..3914 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10776.677.1mRNA_Ecto-sp9_F_contig10776.677.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig10776 2..3914 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig10776.677.1 ID=prot_Ecto-sp9_F_contig10776.677.1|Name=mRNA_Ecto-sp9_F_contig10776.677.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=464bp
NGRDSLLSCSEKQRLNVLPTATSNGHAHVFRCCGQQSAYIHTPRPPATHN
TNITAQQTRLSACPRGLHLLSEKMSRTSSAVVVLLALTHHPVTASNLRTT
NLLDSSPSVVQHATSAAPPTRQASRYLRDSDDSSSDSDSNDYSPQELYVG
CFQDDEQSPLLEFGFISGGFIIERCYMHCTDEGATFMGIKYGFQCSCGFG
QEEDYTLNGPGECACECYGDRDGNCGGQWAFDLYSLRGGDDSATSVTPSP
TASSTGFPMPTGFPILSAAPSTSFTWGPTGGPSSAPTSSPTGSTMTMTDD
DEGYSMTAPPTPTRSLPTPSPSMLVGPTPTMPVAPPTPMPATPPTAMPVV
PPTPMPVESRTPTPVAPRTPAPVTEEPVAPPTPMPVTLPTPTPVAPRTPA
PVTQEPVAPPTAPTPGSPTPTDMTELVDLHNEARCVHIADPLTWSSTVAS
SAAEHAERLTAQCS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002889WSC_carb-bd
IPR035940CAP_sf