mRNA_Ecto-sp9_F_contig10765.665.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10765.665.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQY5_9PHAE) HSP 1 Score: 331 bits (848), Expect = 6.700e-108 Identity = 165/167 (98.80%), Postives = 167/167 (100.00%), Query Frame = 3
Query: 3 VLDNYEDIKLGELHGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGGDGGARLGFLISATLAVHNVPEGLAVALVLHPRGVSKLNTGLWCVFTSLPQPLMAVPAFLFVGQFMPFLPIGLGFAAGAMFWVACFELFSEAVEDSSVIKASVTTGLSFAVMLYAHSYFEHEA 503
VLDNYEDIKLGELHGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGGDGGARLGFLISATLAVHNVPEGLAVALVLHPRGVSKLNTGLWCVFTSLPQPLMAVPAFLFVGQFMPFLPIGLGFAAGAMFWVACFELFSEA+EDSS+IKASVTTGLSFAVMLYAHSYFEHEA
Sbjct: 245 VLDNYEDIKLGELHGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGGDGGARLGFLISATLAVHNVPEGLAVALVLHPRGVSKLNTGLWCVFTSLPQPLMAVPAFLFVGQFMPFLPIGLGFAAGAMFWVACFELFSEAIEDSSIIKASVTTGLSFAVMLYAHSYFEHEA 411
BLAST of mRNA_Ecto-sp9_F_contig10765.665.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5V1_9STRA) HSP 1 Score: 243 bits (621), Expect = 2.860e-75 Identity = 127/164 (77.44%), Postives = 136/164 (82.93%), Query Frame = 3
Query: 3 VLDNYEDIKLGELHGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGGDGGARLGFLISATLAVHNVPEGLAVALVLHPRGVSKLNTGLWCVFTSLPQPLMAVPAFLFVGQFMPFLPIGLGFAAGAMFWVACFELFSEAVEDSSVIKASVTTGLSFAVMLYAHSYFE 494
VLD YEDI LG+L G DAKK LLIVFVM LHSFSEGVGIGVSFGG GA+LGFLISATLAVHNVPEGLAVALVLHPRGVSKLNTGLWC+FTSLPQPLMAV A+ FV QF+PFLP+GLGFAAGAMFWVA ELF EAVE +S A T +F ML+ HS E
Sbjct: 128 VLDKYEDIHLGDLAGADAKKALLIVFVMFLHSFSEGVGIGVSFGGSTGAQLGFLISATLAVHNVPEGLAVALVLHPRGVSKLNTGLWCIFTSLPQPLMAVLAYAFVEQFLPFLPVGLGFAAGAMFWVAVAELFVEAVEATSRGVACAVTLCAFGAMLHIHSLLE 291
BLAST of mRNA_Ecto-sp9_F_contig10765.665.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI09_9STRA) HSP 1 Score: 240 bits (612), Expect = 1.200e-73 Identity = 124/164 (75.61%), Postives = 136/164 (82.93%), Query Frame = 3
Query: 3 VLDNYEDIKLGELHGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGGDGGARLGFLISATLAVHNVPEGLAVALVLHPRGVSKLNTGLWCVFTSLPQPLMAVPAFLFVGQFMPFLPIGLGFAAGAMFWVACFELFSEAVEDSSVIKASVTTGLSFAVMLYAHSYFE 494
VLD YEDI +G+L G+DAKK LLIV VM LHSFSEGVGIGVSFGG GA+LGFLISATLAVHN+PEGLAVALVLHPRGVSKLNTGLWC+FTSLPQPLMAV A+ FV QF+PFLP+GLGFAAGAMFWVA EL EAVE +S+ A +SF MLY HS E
Sbjct: 147 VLDKYEDIHIGDLVGVDAKKALLIVLVMFLHSFSEGVGIGVSFGGSTGAQLGFLISATLAVHNIPEGLAVALVLHPRGVSKLNTGLWCIFTSLPQPLMAVLAYKFVEQFLPFLPVGLGFAAGAMFWVAIAELAVEAVESTSLPVAISIMVVSFCTMLYLHSLLE 310
BLAST of mRNA_Ecto-sp9_F_contig10765.665.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW33_9STRA) HSP 1 Score: 233 bits (595), Expect = 3.310e-73 Identity = 117/164 (71.34%), Postives = 135/164 (82.32%), Query Frame = 3
Query: 9 DNYEDIKLGELHGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGGDGGARLGFLISATLAVHNVPEGLAVALVLHPRGVSKLNTGLWCVFTSLPQPLMAVPAFLFVGQFMPFLPIGLGFAAGAMFWVACFELFSEAVEDSSVIKASVTTGLSFAVMLYAHSYFEHE 500
D YED+KL L G DAKKVLLI+FVMTLHSFSEGVGIGVSFGG GA+LG ISATLAVHNVPEGLAVALVL+PR VSKLN+ LWCVFTSLPQPLMAVPA+LF+ F+P LP+GLGFAAGAM WVA FELF+EA+ED++ + A +T+G +F M Y + E
Sbjct: 1 DKYEDLKLCGLQGADAKKVLLIIFVMTLHSFSEGVGIGVSFGGLTGAQLGVFISATLAVHNVPEGLAVALVLNPRKVSKLNSALWCVFTSLPQPLMAVPAYLFIEHFIPLLPVGLGFAAGAMAWVAVFELFAEAIEDTNKLTAVLTSGTAFLAMFYVQGLIKEE 164
BLAST of mRNA_Ecto-sp9_F_contig10765.665.1 vs.
Match: Zinc (iron permease n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTH2_9STRA) HSP 1 Score: 218 bits (556), Expect = 3.340e-64 Identity = 110/168 (65.48%), Postives = 135/168 (80.36%), Query Frame = 3
Query: 3 VLDNYEDIKLGELHGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGGDGGARLGFLISATLAVHNVPEGLAVALVLHPRGVSKLNTGLWCVFTSLPQPLMAVPAFLFVGQFMPFLPIGLGFAAGAMFWVACFELFSEAVEDSSVIKASVTTG-LSFAVMLYAHSYFEHEA 503
+LD +ED+K+ L G++A+KVLL++FVMTLHSF+EGVGIGVSFGGD GA+LG IS TLAVHNVPEGLAVALVL P+GV+K T LW +FTSLPQPLMAVPA+ FV F+PFLP+GLGFAAGAM WVA FEL ++AVED++ + + G LSFA M+ Y + EA
Sbjct: 234 LLDQHEDVKVAGLDGLEARKVLLLIFVMTLHSFTEGVGIGVSFGGDKGAKLGVFISLTLAVHNVPEGLAVALVLVPKGVNKWKTALWSIFTSLPQPLMAVPAYCFVESFIPFLPVGLGFAAGAMLWVAIFELLADAVEDTASMLVTGGVGALSFAAMMAVQVYLKEEA 401
BLAST of mRNA_Ecto-sp9_F_contig10765.665.1 vs.
Match: Hypothetical (protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FWC4_9STRA) HSP 1 Score: 210 bits (534), Expect = 4.380e-63 Identity = 104/166 (62.65%), Postives = 128/166 (77.11%), Query Frame = 3
Query: 6 LDNYEDIKLGELHGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGGDGGARLGFLISATLAVHNVPEGLAVALVLHPRGVSKLNTGLWCVFTSLPQPLMAVPAFLFVGQFMPFLPIGLGFAAGAMFWVACFELFSEAVEDSSVIKASVTTGLSFAVMLYAHSYFEHEA 503
+D++ED+++G L G DAKKVLLIV VMTLHS +EGVGIGVSFGG G LG ISA+LAVHNVPEGLAVA+VL PRGVSKL+ LWC+FTS+PQP+MAVPA+LFV F+PFLP GLGFA GAM WVA EL EA+ED++ + +V + S +M +HE+
Sbjct: 65 IDSHEDLEVGNLVGADAKKVLLIVLVMTLHSLTEGVGIGVSFGGSHGHALGVFISASLAVHNVPEGLAVAVVLLPRGVSKLSAALWCIFTSVPQPIMAVPAYLFVEHFIPFLPAGLGFAGGAMLWVALAELLVEAIEDTNYMTTAVVSSTSLVIMKILQEMVKHES 230
BLAST of mRNA_Ecto-sp9_F_contig10765.665.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PRV5_9STRA) HSP 1 Score: 206 bits (523), Expect = 6.640e-62 Identity = 107/158 (67.72%), Postives = 125/158 (79.11%), Query Frame = 3
Query: 6 LDNYEDIKLGELHGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGGDGGARLGFLISATLAVHNVPEGLAVALVLHPRGVSKLNTGLWCVFTSLPQPLMAVPAFLFVGQFMPFLPIGLGFAAGAMFWVACFELFSEAVEDS-SVIKASVTTGLSFAVMLY 476
LD +ED+K+G L G DA+KV+LI+FVMTLHSFSEGVGIGVSFGGD G +LG ISA+LAVHN+PEGLAVA+VL PR VSKL +WC+ TSLPQPLMAVPAF+FV F+P LPIGLGFA GAM +VA FEL EA ED+ SV T +FA M+Y
Sbjct: 30 LDQHEDLKVGGLSGADARKVMLIIFVMTLHSFSEGVGIGVSFGGDNGDKLGMFISASLAVHNIPEGLAVAIVLLPRRVSKLTASMWCIATSLPQPLMAVPAFMFVNTFVPILPIGLGFAGGAMAFVAVFELLVEAYEDTESVPITGSLTVAAFAGMMY 187
BLAST of mRNA_Ecto-sp9_F_contig10765.665.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FXS5_9STRA) HSP 1 Score: 210 bits (534), Expect = 7.980e-62 Identity = 104/166 (62.65%), Postives = 128/166 (77.11%), Query Frame = 3
Query: 6 LDNYEDIKLGELHGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGGDGGARLGFLISATLAVHNVPEGLAVALVLHPRGVSKLNTGLWCVFTSLPQPLMAVPAFLFVGQFMPFLPIGLGFAAGAMFWVACFELFSEAVEDSSVIKASVTTGLSFAVMLYAHSYFEHEA 503
+D++ED+++G L G DAKKVLLIV VMTLHS +EGVGIGVSFGG G LG ISA+LAVHNVPEGLAVA+VL PRGVSKL+ LWC+FTS+PQP+MAVPA+LFV F+PFLP GLGFA GAM WVA EL EA+ED++ + +V + S +M +HE+
Sbjct: 161 IDSHEDLEVGNLVGADAKKVLLIVLVMTLHSLTEGVGIGVSFGGSHGHALGVFISASLAVHNVPEGLAVAVVLLPRGVSKLSAALWCIFTSVPQPIMAVPAYLFVEHFIPFLPAGLGFAGGAMLWVALAELLVEAIEDTNYMTTAVVSSTSLVIMKILQEMVKHES 326
BLAST of mRNA_Ecto-sp9_F_contig10765.665.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C401_THAPS) HSP 1 Score: 206 bits (523), Expect = 1.900e-61 Identity = 103/156 (66.03%), Postives = 121/156 (77.56%), Query Frame = 3
Query: 6 LDNYEDIKLGELHGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGGDGGARLGFLISATLAVHNVPEGLAVALVLHPRGVSKLNTGLWCVFTSLPQPLMAVPAFLFVGQFMPFLPIGLGFAAGAMFWVACFELFSEAVEDSSVIKASVTTGLSFAVML 473
L+ ED+K+G L G D KK+LLIVFVMTLHSFSEGVGIGVSFGG+ G LG ISA+LAVHN+PEGLAVA+VL PR VSK +WCV TSLPQPLMAVPAF+FV F+P LP+GLGFA GAM WVA EL EA ED+ +I V + ++ AVM+
Sbjct: 64 LEKNEDVKVGSLSGADTKKILLIVFVMTLHSFSEGVGIGVSFGGEHGHDLGVFISASLAVHNIPEGLAVAIVLLPRKVSKATAAIWCVVTSLPQPLMAVPAFMFVHSFLPLLPVGLGFAGGAMCWVAFMELLLEAYEDTDMITTGVASSVALAVMI 219
BLAST of mRNA_Ecto-sp9_F_contig10765.665.1 vs.
Match: Predicted (protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GAG8_PHATC) HSP 1 Score: 202 bits (514), Expect = 9.600e-59 Identity = 106/165 (64.24%), Postives = 124/165 (75.15%), Query Frame = 3
Query: 6 LDNYEDIKLGELHGM--DAKKVLLIVFVMTLHSFSEGVGIGVSFGGDGGARLGFLISATLAVHNVPEGLAVALVLHPRGVSKLNTGLWCVFTSLPQPLMAVPAFLFVGQFMPFLPIGLGFAAGAMFWVACFELFSEAVEDSSVIKASVTTGLSFAVMLYAHSYFE 494
LD YED+K+G L G DA+K LLI FVMTLHSFSEGVGIGVSFGG G+ LG ISA+LAVHNVPEGLA+A+VL PRG S L +W + TSLPQPLMAVPA+LFV F+P LP+GLGFA GAM WVA FEL SEAVED++++ V + S ML+A E
Sbjct: 165 LDRYEDLKVGGLGGTGTDARKALLIFFVMTLHSFSEGVGIGVSFGGVHGSELGVFISASLAVHNVPEGLAIAVVLLPRGASVLTAAVWAISTSLPQPLMAVPAYLFVHHFIPILPVGLGFAGGAMAWVAFFELLSEAVEDTNLLTTIVVSLCSLVTMLFAQHMIE 329 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10765.665.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10765.665.1 >prot_Ecto-sp9_F_contig10765.665.1 ID=prot_Ecto-sp9_F_contig10765.665.1|Name=mRNA_Ecto-sp9_F_contig10765.665.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=153bp MDAKKVLLIVFVMTLHSFSEGVGIGVSFGGDGGARLGFLISATLAVHNVPback to top mRNA from alignment at Ecto-sp9_F_contig10765:175..3328- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10765.665.1 ID=mRNA_Ecto-sp9_F_contig10765.665.1|Name=mRNA_Ecto-sp9_F_contig10765.665.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3154bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10765:175..3328- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10765:175..3328- >mRNA_Ecto-sp9_F_contig10765.665.1 ID=mRNA_Ecto-sp9_F_contig10765.665.1|Name=mRNA_Ecto-sp9_F_contig10765.665.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=918bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10765:175..3328- (Ectocarpus species9 EcSCA_722f female)back to top |