mRNA_Ecto-sp9_F_contig1076.663.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1076.663.1
Unique NamemRNA_Ecto-sp9_F_contig1076.663.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1076.663.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1076contigEcto-sp9_F_contig1076:23551..23893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_001980.1
Exons2
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928296.0298698-CDS-Ecto-sp9_F_contig1076:23550..236601622928296.0298698-CDS-Ecto-sp9_F_contig1076:23550..23660Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 23551..23660 +
1692277825.5141792-CDS-Ecto-sp9_F_contig1076:23550..236601692277825.5141792-CDS-Ecto-sp9_F_contig1076:23550..23660Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 23551..23660 +
1622928296.0432606-CDS-Ecto-sp9_F_contig1076:23853..238931622928296.0432606-CDS-Ecto-sp9_F_contig1076:23853..23893Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 23854..23893 +
1692277825.523497-CDS-Ecto-sp9_F_contig1076:23853..238931692277825.523497-CDS-Ecto-sp9_F_contig1076:23853..23893Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 23854..23893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1076.663.1prot_Ecto-sp9_F_contig1076.663.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1076 23551..23893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1076.663.1

>prot_Ecto-sp9_F_contig1076.663.1 ID=prot_Ecto-sp9_F_contig1076.663.1|Name=mRNA_Ecto-sp9_F_contig1076.663.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=50bp
GGLDYSLFYRYRQARSNPGRSYTTHSSLAVGQRTERRSVGNTLWPSAGC*
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mRNA from alignment at Ecto-sp9_F_contig1076:23551..23893+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1076.663.1 ID=mRNA_Ecto-sp9_F_contig1076.663.1|Name=mRNA_Ecto-sp9_F_contig1076.663.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=343bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1076:23551..23893+ (Ectocarpus species9 EcSCA_722f female)
GGCGGACTAGACTACTCTTTATTTTACAGATACAGGCAAGCACGCAGCAA
CCCTGGTAGGTCATACACCACTCACTCATCCTTGGCAGTTGGACAGAGGA
CAGAGAGGAGGTGAGTTCGTTATTGTACCAAAAAAGACCGTTTCGCGTTC
AGTCCCAGCACACAAGCACTGTAGTTTGCCGGGAAAAAAAAAAAGCGAAA
ACGAACGACACCACCACCACCGCACTTTTAGAAGTTAACATAATCTCACA
GAAAGACCACCCGCTCGTGAATTTTCTTACCTCAAATATGCATACCCCCC
GAGGTCAGTTGGCAACACCTTGTGGCCGTCTGCAGGATGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1076:23551..23893+

>mRNA_Ecto-sp9_F_contig1076.663.1 ID=mRNA_Ecto-sp9_F_contig1076.663.1|Name=mRNA_Ecto-sp9_F_contig1076.663.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1076:23551..23893+ (Ectocarpus species9 EcSCA_722f female)
GGCGGACTAGACTACTCTTTATTTTACAGATACAGGCAAGCACGCAGCAA
CCCTGGTAGGTCATACACCACTCACTCATCCTTGGCAGTTGGACAGAGGA
CAGAGAGGAGGGCGGACTAGACTACTCTTTATTTTACAGATACAGGCAAG
CACGCAGCAACCCTGGTAGGTCATACACCACTCACTCATCCTTGGCAGTT
GGACAGAGGACAGAGAGGAGGTCAGTTGGCAACACCTTGTGGCCGTCTGC
AGGATGTTAGGTCAGTTGGCAACACCTTGTGGCCGTCTGCAGGATGTTAG
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